BAC Information

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BAC

Clone NameB6Ng01-039I06
Chromosome16 (Build37)
Map Location 82,772,162 - 82,773,311
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621470, LOC435484, Pgk1-ps1, EG665260
Downstream geneEG545172, LOC100039572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039I06.bB6Ng01-039I06.g
ACCDH866768DH866769
length1,1671,136
definitionDH866768|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I06, 5' end.DH866769|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagcaagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttgctaaacacatgaaactcaag
aaaattgaagactgaagtgtgaacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactaccatatccggggatccatcccataatc
aggttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaac
atagaagtggatgctcacagtcggctattggatggatcacatggccccaa
tgaagagctagagaaagtaccaaagaagctaaagggatctgcaaccctat
tggtggaacaacattatgactaaccagtaccccggagctctgactctagc
tgcatatgcatcaaagaatggcctagtcgccagccactggaaagagagcc
atgaccgcaaactttatatgcccagtatgggaacgccaggcaaaaagaat
agtttgttaatgaaaag
gaattcttaaggtctactcaggctaacatcaaatgatttaagaatataat
cactggtgtatttgttaaccaattaagctctagctacttgaataaactga
ggcacacacacacacacacacacacacacacacacacctaacattttgta
aaataacaccataaatgattaaggaaaatgaagtcagtcttacttatgga
taaaagtttgctttgattctaaagtatctctagttgaaaatttataaatt
gtaaggctcaaacataacagggataaaactataaaatattttatcttata
cagtttctctaaagtgttaaagattattcaaaatacaagttaatgattag
tcaccttataaaagattagattattccatgagtttataaccatctttata
gtcatgttaagtacaaatgtaattcatttacaggatcaagcttgaggcga
gagacctttttaatacctcccattatcgtctttcacatgtgttgtcaaag
ctaaacccaaagtaaataagtaaaaacaggtttaaagaaaatttacattt
tttaaaatataaaacattcaaaggaatacttaaacaaacaaacaaaaaca
actcaagctggtacatgatgtctttcagatccctcagaaagatctgctaa
atatggcactagggtttctattgaaagagagagacaggaaagaggtaaat
ggccttccatgataggcagaaataccagtttctggcagcaaccctgaggc
aacctccaaagaagatgggacaccaacatgttctacctgggacctgttcc
aagtatgacaacagtagacactcaggcaaaaaacagccctgcacctaacc
tgcctccagagccctgacaaaactcgcaacatgtatgatatttgaaggcc
ctgagccccactagatcttgccaagtagctcagtgctccaagtttttctg
tcaaaggaacctaagtggatcttctaggatggagcagccaaactggccct
gttctgctgtcttagcacatctgtcccaacaaagccaacaaactacatgg
aggtccctgattgtctgtcctggtacactttggtttcatgtttaattctt
aactatcttttacgtagatggttggctcagaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_82772162_82773311
seq2: B6Ng01-039I06.g_68_1203

seq1  GAATTCTTAAGGTCTACTCAGGCTAACATCAAATGATTTAAGAATATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGGTCTACTCAGGCTAACATCAAATGATTTAAGAATATAAT  50

seq1  CACTGGTGTATTTGTTAACCAATTAAGCTCTAGCTACTTGAATAAACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTGTATTTGTTAACCAATTAAGCTCTAGCTACTTGAATAAACTGA  100

seq1  GGCACACACACACACACACACACACACACACACACACCTAACATTTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACACACACACACACACACACACACACACACACCTAACATTTTGTA  150

seq1  AAATAACACCATAAATGATTAAGGAAAATGAAGTCAGTCTTACTTATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACACCATAAATGATTAAGGAAAATGAAGTCAGTCTTACTTATGGA  200

seq1  TAAAAGTTTGCTTTGATTCTAAAGTATCTCTAGTTGAAAATTTATAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTTGCTTTGATTCTAAAGTATCTCTAGTTGAAAATTTATAAATT  250

seq1  GTAAGGCTCAAACATAACAGGGATAAAACTATAAAATATTTTATCTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCTCAAACATAACAGGGATAAAACTATAAAATATTTTATCTTATA  300

seq1  CAGTTTCTCTAAAGTGTTAAAGATTATTCAAAATACAAGTTAATGATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTCTAAAGTGTTAAAGATTATTCAAAATACAAGTTAATGATTAG  350

seq1  TCACCTTATAAAAGATTAGATTATTCCATGAGTTTATAACCATCTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTATAAAAGATTAGATTATTCCATGAGTTTATAACCATCTTTATA  400

seq1  GTCATGTTAAGTACAAATGTAATTCATTTACAGGATCAAGCTTGAGGCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTTAAGTACAAATGTAATTCATTTACAGGATCAAGCTTGAGGCGA  450

seq1  GAGACCTTTTTAATACCTCCCATTATCGTCTTTCACATGTGTTGTCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTTTTAATACCTCCCATTATCGTCTTTCACATGTGTTGTCAAAG  500

seq1  CTAAACCCAAAGTAAATAAGTAAAAACAGGTTTAAAGAAAATTTACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCCAAAGTAAATAAGTAAAAACAGGTTTAAAGAAAATTTACATTT  550

seq1  TTTAAAATATAAAACATTCAAAGGAATACTTAAACAAACAAACAAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATATAAAACATTCAAAGGAATACTTAAACAAACAAACAAAAACA  600

seq1  ACTCAAGCTGGTACATGATGTCTTTCAGATCCCTCAGAAAGATCTGCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGCTGGTACATGATGTCTTTCAGATCCCTCAGAAAGATCTGCTAA  650

seq1  ATATGGCACTAGGGTTTCTATTGAAAGAGAGAGACAGGAAAGAGGTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCACTAGGGTTTCTATTGAAAGAGAGAGACAGGAAAGAGGTAAAT  700

seq1  GGCCTTCCATGATAGGCAGAAATACCAGTTTCTGGCAGCAACCCTGAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCCATGATAGGCAGAAATACCAGTTTCTGGCAGCAACCCTGAGGC  750

seq1  AACCTCCAAAGAAGATGGGACACCAACATGTTCTACCTGGGACCTGTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCAAAGAAGATGGGACACCAACATGTTCTACCTGGGACCTGTTCC  800

seq1  AAGTATGACAACAGTAGACACTCAGGCAAAAAACAGCCCTGCACCTAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGACAACAGTAGACACTCAGGCAAAAAACAGCCCTGCACCTAACC  850

seq1  TGCCTCCAGAGCCCTGACAAAACTCGCAACATGTATGATATTTGAAGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCAGAGCCCTGACAAAACTCGCAACATGTATGATATTTGAAGGCC  900

seq1  CTGAGCCCCACTAGATCTTGCCAAGTAGCTCAGTGCTCCAAGTTTTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCCACTAGATCTTGCCAAGTAGCTCAGTGCTCCAAGTTTTTCTG  950

seq1  TCAAAGGAACCTAAGTTGGATCTTCTAGGATGGAGCAGCCAAAACTGGCC  1000
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  TCAAAGGAACCTAAG-TGGATCTTCTAGGATGGAGCAGCC-AAACTGGCC  998

seq1  CTGTTCTGCTGTCTTAGCACATCTGTCCCCAACAAAGCCAACAAAACTAC  1050
      |||||||||||||||||||||||||| ||||||||||||||| |||||| 
seq2  CTGTTCTGCTGTCTTAGCACATCTGT-CCCAACAAAGCCAAC-AAACTA-  1045

seq1  CATGGAGGGTCCCTGATTGTCTGTCCTGGTACAACTTTTGGTTTCATGTT  1100
      |||||| ||||||||||||||||||||||||||   |||||||||||| |
seq2  CATGGA-GGTCCCTGATTGTCTGTCCTGGTACA--CTTTGGTTTCATG-T  1091

seq1  TTAATTCTTAAACTATTCTTTTTACGTAGAATGGTTGTGCTCAGTAATTT  1150
      ||||||||| ||||||   |||||||||| ||||||| |||||| |||||
seq2  TTAATTCTT-AACTAT--CTTTTACGTAG-ATGGTTG-GCTCAGAAATTT  1136