BAC Information

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BAC

Clone NameB6Ng01-040E01
Chromosome16 (Build37)
Map Location 66,917,190 - 67,089,137
singlet/doubletdoublet
Overlap geneCadm2
Upstream geneLOC664846, LOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040E01.bB6Ng01-040E01.g
ACCDH867278DH867279
length1,1121,072
definitionDH867278|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E01, 5' end.DH867279|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,917,190 - 66,918,309)(67,088,062 - 67,089,137)
sequence
gaattcctatttattttcatgcccaaaggagagagaaaagaaaattgcaa
tcaatgatatttctgttgcacaataagcccagctgggagagtaggtgggg
tcaaggaaccgtccccaaagttcccgctgtggatcctagcagtctctttc
tcttctcccttttacagactctaactaaaggaaatggccaaaggcaacaa
cactgataataaaaaatatattgcctgcagaagttgcacatgatataaac
caattttctattttttatgaagtagcgagtctgtgaggtataggagagaa
tcagataaaaaaaaactattaacaattcttacatatttcttacactgttt
tcctggttttgttgaatgttaatgtactgagcaattttagaaaacgttaa
aaaagaaatttggttataactactattaattgcttttgagtgagacacaa
aaatgaaaatgataaaatatgataagaaactcttattttgatgtaattca
atgtgtaactttaaaaatatcttcgcatagttataaatggatcaaaacaa
ctttattatgattcagaagcatttctgttgcttcatgtagattatgaata
gagacagcatatttccttgtgctgttcaccttgcagaatatctgtgaatg
aacggggtcttttgaatgcctcgtgttctctatgatgaattatgcagaag
ctctattccagaactatgctaaggtgctaaaagttcatgtctgcgagttg
tttgtgactcacacagatgtagtggacaaatacttatttttcctttactc
agaagcccaaatttttgtatggaataaaataccactgagttcacaattgg
atgcattgagaagctcagacaagatgtttttctaagagacaaaatcagca
tccttgtttataggatgtggacagaagatgtgcttcaaatctcataatag
caaagggattggaacagaacgaattgcttattgatttgagcattccccaa
cactgtaatttatatttagaacataaaaatcacttcttcgagtgatcaga
gtaggaactttgtatttctatatggataaatttatggggggaagaatact
tctatataatga
gaattctattgttaaagaaatttttaattttttttaaataatcaaatact
gtcatagcattttgtccttactgtgacaaaattcttgacagaagcaattc
cctgaaaaacaaacaaacaaacaaacaaacaaacaaacaacaggcaaagc
ctattagggtttacagtctgaagggatacattccatcatgagaagagaaa
ggagagtggctggataaggagctcacccgctgttcacactgcctatcggt
caggagtgagagaatggactgggagtgtggccaggctattaagcttcttc
ttctagggaagccatcaccttgtaaaggatgcattacatcccaaactgca
cctcccagtgagcctacaggaaacgtttttcattcaaaccacaccacata
gcctgtaccagttctttcattggaccctttcacaagaccagattactaaa
tggcacttttaaagaactcatgtatattgtataaatgaattgcatgtttt
gcttcttctcagacagtcaagtctcctggtccattgaaatatccctcgca
catgataggagcagttcacacttctcgatgcatctttcctcattttccac
ttgtttatagatttctaatttagaaaaagcatcaagacagcatgcgttct
gctgcatatgtactgccaattacatagaagcttaaaaatatcagtaagga
cgttagaggatgttctaaatgatgagtcagagggtactatagtcactcct
gccctgtgagaaggcaatggatagataatttgtaacttcctaagcaaggt
aaggatttggttttccttttaaataggttttcaatctgatatgttgaaga
tgcactgtaatgggagtttaaatgaggttaaaaagagggcaaaggtaaag
tttttcttcttctttcttttatttttaaatactcttaagtagatcagact
ctggagtttctttttgattagccacttccagaaggaaattttatgcagct
cagtgtttggattgtataattattatcagccatccctttctcaagctatt
ctcacaaaaaaccataggagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66917190_66918309
seq2: B6Ng01-040E01.b_36_1147

seq1  GAATTCCTATTTATTTTCATGCCCAAAGGAGAGAGAAAAGAAAATTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTTATTTTCATGCCCAAAGGAGAGAGAAAAGAAAATTGCAA  50

seq1  TCAATGATATTTCTGTTGCACAATAAGCCCAGCTGGGAGAGTAGGTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGATATTTCTGTTGCACAATAAGCCCAGCTGGGAGAGTAGGTGGGG  100

seq1  TCAAGGAACCGTCCCCAAAGTTCCCGCTGTGGATCCTAGCAGTCTCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAACCGTCCCCAAAGTTCCCGCTGTGGATCCTAGCAGTCTCTTTC  150

seq1  TCTTCTCCCTTTTACAGACTCTAACTAAAGGAAATGGCCAAAGGCAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCCTTTTACAGACTCTAACTAAAGGAAATGGCCAAAGGCAACAA  200

seq1  CACTGATAATAAAAAATATATTGCCTGCAGAAGTTGCACATGATATAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATAATAAAAAATATATTGCCTGCAGAAGTTGCACATGATATAAAC  250

seq1  CAATTTTCTATTTTTTATGAAGTAGCGAGTCTGTGAGGTATAGGAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCTATTTTTTATGAAGTAGCGAGTCTGTGAGGTATAGGAGAGAA  300

seq1  TCAGATAAAAAAAAACTATTAACAATTCTTACATATTTCTTACACTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAAAAAAAAACTATTAACAATTCTTACATATTTCTTACACTGTTT  350

seq1  TCCTGGTTTTGTTGAATGTTAATGTACTGAGCAATTTTAGAAAACGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTTTGTTGAATGTTAATGTACTGAGCAATTTTAGAAAACGTTAA  400

seq1  AAAAGAAATTTGGTTATAACTACTATTAATTGCTTTTGAGTGAGACACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATTTGGTTATAACTACTATTAATTGCTTTTGAGTGAGACACAA  450

seq1  AAATGAAAATGATAAAATATGATAAGAAACTCTTATTTTGATGTAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAATGATAAAATATGATAAGAAACTCTTATTTTGATGTAATTCA  500

seq1  ATGTGTAACTTTAAAAATATCTTCGCATAGTTATAAATGGATCAAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAACTTTAAAAATATCTTCGCATAGTTATAAATGGATCAAAACAA  550

seq1  CTTTATTATGATTCAGAAGCATTTCTGTTGCTTCATGTAGATTATGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTATGATTCAGAAGCATTTCTGTTGCTTCATGTAGATTATGAATA  600

seq1  GAGACAGCATATTTCCTTGTGCTGTTCACCTTGCAGAATATCTGTGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCATATTTCCTTGTGCTGTTCACCTTGCAGAATATCTGTGAATG  650

seq1  AACGGGGTCTTTTGAATGCCTCGTGTTCTCTATGATGAATTATGCAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGGTCTTTTGAATGCCTCGTGTTCTCTATGATGAATTATGCAGAAG  700

seq1  CTCTATTCCAGAACTATGCTAAGGTGCTAAAAGTTCATGTCTGCGAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTCCAGAACTATGCTAAGGTGCTAAAAGTTCATGTCTGCGAGTTG  750

seq1  TTTGTGACTCACACAGATGTAGTGGACAAATACTTATTTTTCCTTTACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACTCACACAGATGTAGTGGACAAATACTTATTTTTCCTTTACTC  800

seq1  AGAAGCCCAAATTTTTGTATGGAATAAAATACCACTGAGTTCACAATTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCCAAATTTTTGTATGGAATAAAATACCACTGAGTTCACAATTGG  850

seq1  ATGCATTGAGAAGCTCAGACAAGATGTTTTTCTAAGAGACAAAATCAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTGAGAAGCTCAGACAAGATGTTTTTCTAAGAGACAAAATCAGCA  900

seq1  TCCTTGTTTATAGGATGTGGACAGAAGATGTGCTTCAAATCTCATTAATA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCTTGTTTATAGGATGTGGACAGAAGATGTGCTTCAAATCTCA-TAATA  949

seq1  GCAAAGGGATTGGAACAGAACGAATTGCTTATTGATTTGAGCATTTCCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCAAAGGGATTGGAACAGAACGAATTGCTTATTGATTTGAGCA-TTCCCC  998

seq1  AACACTGTTATTTTATATTTAGAACATAAAAATCACTTCTTCCAGAGTGA  1050
      ||||||| || |||||||||||||||||||||||||||||||  ||||||
seq2  AACACTG-TAATTTATATTTAGAACATAAAAATCACTTCTTC--GAGTGA  1045

seq1  TCAGAGTTAAGAAACTTTGTATTTCTATATGGTATAAA-TTAT-GGGGGA  1098
      |||||||  || |||||||||||||||||||| ||||| |||| ||||||
seq2  TCAGAGT--AGGAACTTTGTATTTCTATATGG-ATAAATTTATGGGGGGA  1092

seq1  TGAATACTTCATATAATAATGA  1120
       ||||||||| ||| |||||||
seq2  AGAATACTTC-TAT-ATAATGA  1112

seq1: chr16_67088062_67089137
seq2: B6Ng01-040E01.g_68_1139 (reverse)

seq1  GTCTCACTATGGTATTTTGTGAAGAATAGCTTGAGAAAGTGAT-GCTGAT  49
      ||||| ||||||| ||||||| ||||||||||||||||| ||| ||||||
seq2  GTCTC-CTATGGTTTTTTGTG-AGAATAGCTTGAGAAAGGGATGGCTGAT  48

seq1  GAATAAATTATAC-ATTCAAACACTTGAGCTGCATATAAATTTCCCTTCT  98
       ||| |||||||| || ||||||| ||||||||||| |||||| ||||||
seq2  -AAT-AATTATACAATCCAAACAC-TGAGCTGCATA-AAATTT-CCTTCT  93

seq1  GGAAGT-GCTATTCAAAAAGAAACTCCAGAGTCTTGATCTACTT-AGAGT  146
      |||||| |||| ||||||||||||||||||||| |||||||||| |||||
seq2  GGAAGTGGCTAATCAAAAAGAAACTCCAGAGTC-TGATCTACTTAAGAGT  142

seq1  ATTTAAAAAATAAAAGAAAGAAGAAGAAAAACTTTACCTTTGCCCTCTTT  196
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTT-AAAAATAAAAGAAAGAAGAAGAAAAACTTTACCTTTGCCCTCTTT  191

seq1  TTAACCTCATTT-AACTCCCATTACAGTGCATCTTCAACATATCAGATTG  245
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTAACCTCATTTAAACTCCCATTACAGTGCATCTTCAACATATCAGATTG  241

seq1  AAAACCTATTTTAAAGGAAAACCAAATCCTTACCTTGCTTAGGAAGTTAC  295
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTATTTAAAAGGAAAACCAAATCCTTACCTTGCTTAGGAAGTTAC  291

seq1  AAATTATCTATCCATTGCCTTCTCACAGGGCAGGAGTGACTATAGTACCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCTATCCATTGCCTTCTCACAGGGCAGGAGTGACTATAGTACCC  341

seq1  TCTGACTCATCATTTAGAACATCCTCTAACGTCCTTACTGATATTTTTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCATCATTTAGAACATCCTCTAACGTCCTTACTGATATTTTTAA  391

seq1  GCTTCTATGTAATTGGCAGTACATATGCAGCAGAACGCATGCTGTCTTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTATGTAATTGGCAGTACATATGCAGCAGAACGCATGCTGTCTTGA  441

seq1  TGCTTTTTCTAAATTAGAAATCTATAAACAAGTGGAAAATGAGGAAAGAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTCTAAATTAGAAATCTATAAACAAGTGGAAAATGAGGAAAGAT  491

seq1  GCATCGAGAAGTGTGAACTGCTCCTATCATGTGCGAGGGATATTTCAATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGAGAAGTGTGAACTGCTCCTATCATGTGCGAGGGATATTTCAATG  541

seq1  GACCAGGAGACTTGACTGTCTGAGAAGAAGCAAAACATGCAATTCATTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGAGACTTGACTGTCTGAGAAGAAGCAAAACATGCAATTCATTTA  591

seq1  TACAATATACATGAGTTCTTTAAAAGTGCCATTTAGTAATCTGGTCTTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATACATGAGTTCTTTAAAAGTGCCATTTAGTAATCTGGTCTTGT  641

seq1  GAAAGGGTCCAATGAAAGAACTGGTACAGGCTATGTGGTGTGGTTTGAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTCCAATGAAAGAACTGGTACAGGCTATGTGGTGTGGTTTGAAT  691

seq1  GAAAAACGTTTCCTGTAGGCTCACTGGGAGGTGCAGTTTGGGATGTAATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACGTTTCCTGTAGGCTCACTGGGAGGTGCAGTTTGGGATGTAATG  741

seq1  CATCCTTTACAAGGTGATGGCTTCCCTAGAAGAAGAAGCTTAATAGCCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTACAAGGTGATGGCTTCCCTAGAAGAAGAAGCTTAATAGCCTG  791

seq1  GCCACACTCCCAGTCCATTCTCTCACTCCTGACCGATAGGCAGTGTGAAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTCCCAGTCCATTCTCTCACTCCTGACCGATAGGCAGTGTGAAC  841

seq1  AGCGGGTGAGCTCCTTATCCAGCCACTCTCCTTTCTCTTCTCATGATGGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGTGAGCTCCTTATCCAGCCACTCTCCTTTCTCTTCTCATGATGGA  891

seq1  ATGTATCCCTTCAGACTGTAAACCCTAATAGGCTTTGCCTGTTGTTTGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCCCTTCAGACTGTAAACCCTAATAGGCTTTGCCTGTTGTTTGTT  941

seq1  TGTTTGTTTGTTTGTTTGTTTGTTTTTCAGGGAATTGCTTCTGTCAAGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTGTTTGTTTTTCAGGGAATTGCTTCTGTCAAGAA  991

seq1  TTTTGTCACAGTAAGGACAAAATGCTATGACAGTATTTGATTATTTAAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCACAGTAAGGACAAAATGCTATGACAGTATTTGATTATTTAAAA  1041

seq1  AAAATTAAAAATTTCTTTAACAATAGAATTC  1076
      |||||||||||||||||||||||||||||||
seq2  AAAATTAAAAATTTCTTTAACAATAGAATTC  1072