BAC Information

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BAC

Clone NameB6Ng01-040K11
Chromosome4 (Build37)16 (Build37)
Map Location 81,532,441 - 81,533,24660,775,834 - 60,776,386
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneD4Bwg0951e, Mpdz, LOC100040131, LOC100040144, EG668895
Downstream geneLOC100040164, EG545641, Nfib, Zdhhc21, Cer1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040K11.bB6Ng01-040K11.g
ACCDH867547DH867548
length805955
definitionDH867547|Mus musculus domesticus DNA, BAC clone: B6Ng01-040K11, 5' end.DH867548|Mus musculus domesticus DNA, BAC clone: B6Ng01-040K11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,532,441 - 81,533,246)(60,775,834 - 60,776,386)
sequence
gaattctctgtcagatttattttgtgggcatgaattcttttagcctgtct
gtatcctggaaagcttttcaatagtgagcaataagcctagctcagcatct
gtggtctttagaacttaaaagtatatttcttcaagttttcccatctatta
aggtttctgtcaagtcttggctattactctgattgctttgttcttatgtg
tgatttgtgagaatttttgttgttgttgttttaaattagttgtgtggctg
actacattgagtggaagtttggttctatttttgttgttatttgaacatgg
ttgatttttggtcaggtaggaggagtgagaaagttaccccttcatatact
tagtgttgattattgattggagattcttggtgattccaatttagtgttag
cctgtttgaatttagtattagcctgtcttagaatggtgtgacactatttg
gtgaagtcagagaaaaatccgtgctatggctaccagcaagacctgggcat
gcaaaggcagtttgaagcaatggatcaggcagaatctctataaaagcaca
aaaatgtggtccttgatgagtctgaatctggaggacaaagggcaacacag
gtctagaaacctagaacagactcaacaagagaacacatagctaaatctga
gccaaaagtcattgcagaaacagctcctgccttggcccaaagggcagtgt
gaagtgggtgccccaggtcaagttaggcaagaaagtgcaagattcatctc
tgcctggatggggacttcaagggggaaagtgaagggttgggtggccacaa
ggatg
ttatcatgaatgggtgttggatcttgtcaaatgctttttctgcatctaac
gagatgatcatgtggtttttgtctttgagtttgtttatataatggattac
attgatggattttcgtatattaaaccatccctgcatccctggaataaaac
ctacttggtcaggatggatgattgctttaatgtgttcttggattcggtta
gcgagaattttattgaggatttttgcatcgatattcataagagaaattgg
tctgaagttctctatctttgttggatctttctgtggtttaggtatcagag
taatagtggcttcataaaatgagttgggtagagtaccttctacttctatt
ttgtgaaatagtttgtgcagaattggaattagatcttctttgaaggtctg
atagaactctgcactaaacccatctggtcctgggctttttttggttggga
gactattaataactgcttctatttctttaggtgatatgggactgtttaga
tggtcaacttgatcctgattcaactttggtacctggtatctgtccagaaa
tttgtccatttcgtccaggttttccagttttgttgagtatagccttttgt
agaaggatctgatggtgttttggatttcttcaggatctgttgttatgtct
cccttttcatttctgatttttgttaattaggattttgtccctgtgccctt
tagtgagtctagctaagggtttatctatcttgttgattttctcaaagaac
caactccctcgtttggttaattctttgaatagttcttcttgtttccactt
ggttgatttcacccctgagtttgattatttcctgccgtctactcctctgg
ggtgatttgcttcctttttttctagggctttagatgtgttgtcaagctgc
tagatgtgctgtctccgtttctccttggaggcactcagagctatgagttc
cctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_81532441_81533246
seq2: B6Ng01-040K11.b_45_849 (reverse)

seq1  CATCCTTGTGGCCACCCAACCCTTCACTTTCCCCCTTGAAGTCCCCATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGTGGCCACCCAACCCTTCACTTTCCCCCTTGAAGTCCCCATCC  50

seq1  AGGCAGAGATGAATCCTTGCACTTTCTTGCCTAACTTGACCTGGGGCACC  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGATGAAT-CTTGCACTTTCTTGCCTAACTTGACCTGGGGCACC  99

seq1  CACTTCACACTGCCCTTTGGGCCAAGGCAGGAGCTGTTTCTGCAATGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCACACTGCCCTTTGGGCCAAGGCAGGAGCTGTTTCTGCAATGACT  149

seq1  TTTGGCTCAGATTTAGCTATGTGTTCTCTTGTTGAGTCTGTTCTAGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCAGATTTAGCTATGTGTTCTCTTGTTGAGTCTGTTCTAGGTTT  199

seq1  CTAGACCTGTGTTGCCCTTTGTCCTCCAGATTCAGACTCATCAAGGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCTGTGTTGCCCTTTGTCCTCCAGATTCAGACTCATCAAGGACCA  249

seq1  CATTTTTGTGCTTTTATAGAGATTCTGCCTGATCCATTGCTTCAAACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGTGCTTTTATAGAGATTCTGCCTGATCCATTGCTTCAAACTGC  299

seq1  CTTTGCATGCCCAGGTCTTGCTGGTAGCCATAGCACGGATTTTTCTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCATGCCCAGGTCTTGCTGGTAGCCATAGCACGGATTTTTCTCTGA  349

seq1  CTTCACCAAATAGTGTCACACCATTCTAAGACAGGCTAATACTAAATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCAAATAGTGTCACACCATTCTAAGACAGGCTAATACTAAATTCA  399

seq1  AACAGGCTAACACTAAATTGGAATCACCAAGAATCTCCAATCAATAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTAACACTAAATTGGAATCACCAAGAATCTCCAATCAATAATCA  449

seq1  ACACTAAGTATATGAAGGGGTAACTTTCTCACTCCTCCTACCTGACCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAGTATATGAAGGGGTAACTTTCTCACTCCTCCTACCTGACCAAA  499

seq1  AATCAACCATGTTCAAATAACAACAAAAATAGAACCAAACTTCCACTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACCATGTTCAAATAACAACAAAAATAGAACCAAACTTCCACTCAA  549

seq1  TGTAGTCAGCCACACAACTAATTTAAAACAACAACAACAAAAATTCTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCAGCCACACAACTAATTTAAAACAACAACAACAAAAATTCTCAC  599

seq1  AAATCACACATAAGAACAAAGCAATCAGAGTAATAGCCAAGACTTGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACACATAAGAACAAAGCAATCAGAGTAATAGCCAAGACTTGACAG  649

seq1  AAACCTTAATAGATGGGAAAACTTGAAGAAATATACTTTTAAGTTCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTAATAGATGGGAAAACTTGAAGAAATATACTTTTAAGTTCTAAA  699

seq1  GACCACAGATGCTGAGCTAGGCTTATTGCTCACTATTGAAAAGCTTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGATGCTGAGCTAGGCTTATTGCTCACTATTGAAAAGCTTTCCA  749

seq1  GGATACAGACAGGCTAAAAGAATTCATGCCCACAAAATAAATCTGACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAGACAGGCTAAAAGAATTCATGCCCACAAAATAAATCTGACAGA  799

seq1  GAATTC  806
      ||||||
seq2  GAATTC  805

seq1: chr16_60775834_60776386
seq2: B6Ng01-040K11.g_465_1014 (reverse)

seq1  AGAGGGAAACTCATAGCGCTGAGTGCCTCCAAGAAGAAACGGGAGACAGC  50
      |||||| |||||||||| ||||||||||||||| |||||| |||||||||
seq2  AGAGGG-AACTCATAGCTCTGAGTGCCTCCAAGGAGAAAC-GGAGACAGC  48

seq1  ACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAG  100
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACAT-CTAGCAGCTTGACAACACATCT-AAAGCCCTAGAAAAAAAGGAAG  96

seq1  CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGT  150
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAAA-TCACCCCAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGT  145

seq1  GAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAC  195

seq1  GA-GGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCT  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCT  245

seq1  AGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAAC-AAAATCAGAA  298
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAAATCAGAA  295

seq1  ATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATC  345

seq1  AGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGA  395

seq1  AATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATC  445

seq1  AAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTT  495

seq1  ATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGC  545

seq1  AGAGT  553
      |||||
seq2  AGAGT  550