BAC Information

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BAC

Clone NameB6Ng01-040L03
Chromosome16 (Build37)
Map Location 42,136,732 - 42,310,078
singlet/doubletdoublet
Overlap geneLsamp, Gap43
Upstream geneEG667450
Downstream geneBC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040L03.bB6Ng01-040L03.g
ACCDH867579DH867580
length1,1871,079
definitionDH867579|Mus musculus domesticus DNA, BAC clone: B6Ng01-040L03, 5' end.DH867580|Mus musculus domesticus DNA, BAC clone: B6Ng01-040L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,136,732 - 42,137,914)(42,308,993 - 42,310,078)
sequence
gaattcaattagacacccaatctgctctaaccaagagaaacaagaatgtg
cttggccccacaaaaatagtcagtaagtgttaactgaaggtaaagataga
aaactcaaaataaaactccatcataatattttcacaaactctataaataa
atgatgctggctacaaatcaggaaaataattctactttcaaattcctctg
gaatcacctttttaatccaaatctcataaagtacatgtatataaaaatca
gtcctcacaccagaaattctgttcagataaaccaaggtagccaaacatag
tttcagtgtgtaaatagattcagtctacagcaggttctcacctatagaaa
gatagccaggatcacttttatcccttcatctgaatcttctttcttttgtt
taacttcagttctagtccatttcaaacacaggcttcaggattaggtcagg
caaacaggatgactaagaaaactactgatgggagagattatcataatgaa
cataccctggataccactaaatgaagcaatctcagcacttgtaactttcc
cactgccactcattgattcatttactcgttcgccaacagatgtttgttac
aggacacatagaggctagcacagtaaggaagggagacataacagtttcac
ccgttgagctcgcagcagattctgtagcctctcctttttatttctcttag
ataaccgccctctgtagtaggtctatatcattgcacatagccattttaca
ggcaaagtctatttcctgactagtaggaggtccaagcacctatagaaagc
taaatctttgcctcaaaatctttgtcattgaataaatttggtgaaattta
tggaatggacaagacttttgactttctgtgtcttatgaaggcacagatta
tatcaaccacagaaatacactttcctggctctatgctctcaattgcacct
tccattatgcataatgtgcctctaggatagtatctaccacagagcaagtg
tttcatagatgcatgctattgcttttattcagatcttttctaagcggact
tctttcctattcatgagggaattctaaacaatgctcttagaatctctatt
cttccccactccacaactgaacatgtagggtctccatctttaactatagt
tctctctctcttcttctgctctctctctctctctctc
gaattctcttcggttctggaatgtgcccacagtcagagactatgaaaatt
cagtgagacgtccagcaggaaagtctggggagacctaggaaatgattcta
gtgatgtgatgcatttcttattcatcagattttaactttctctgctgatg
ttagacaaacctcaatattcaaaggagacggcaaccggtttttttgtttc
tagagtttttcaggcaagaagtaggctctacactgagagcaggatgagaa
gtcacgcaagccccacggacctttgagcaagtgcactttagatgtcaaca
agacttcagcgaggtctgattgcatcagagtaatcaaacttttggcctgt
gcacagcagataattttttttaatataccactgaaaagtctggcagggat
cctaaaacctggagtctcgtagctcatgtcatatacctctaacaccttgg
agaaaataaatcagatggcagtgttcctactagtgaatttattgtctttg
tagcaatttgctctccccaggatgcatgtcaacaatgaatatatagcagt
caagatcatcctgaatgtcaaagaaacatcattcaactcgcggtagtaaa
acaattgactaaaaaatgtctgttaccacagattacatcaccagcatcct
cacctccttcactctgcatacatttcattttggtcttaaactatggcgag
cagtgtgtcgggggatgttgcactaggatcctgcatttgcctgaagggtg
aaacgtaccctggatgggggggggcgctatctgtatttctccacgtactg
aaactttgtagaagactaataggtagcctataacttagtagatttgatga
acagtgagagttatttgcatttatattgggtattatagtcaggaaattat
gcacaggagctttttctcctgggcaggaagcataatctgctctgtcaggc
cacactcttcagctttcctagcccatcgtcaccacacagaagcacaacca
agtctccatgattgaaatgtagcagaggaaccagcctgtctgctaatctg
tatctttcaagcccaggatggaaggataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_42136732_42137914
seq2: B6Ng01-040L03.b_47_1233

seq1  GAATTCAATTAGACACCCAATCTGCTCTAACCAAGAGAAACAAGAATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAGACACCCAATCTGCTCTAACCAAGAGAAACAAGAATGTG  50

seq1  CTTGGCCCCACAAAAATAGTCAGTAAGTGTTAACTGAAGGTAAAGATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCCCACAAAAATAGTCAGTAAGTGTTAACTGAAGGTAAAGATAGA  100

seq1  AAACTCAAAATAAAACTCCATCATAATATTTTCACAAACTCTATAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAAATAAAACTCCATCATAATATTTTCACAAACTCTATAAATAA  150

seq1  ATGATGCTGGCTACAAATCAGGAAAATAATTCTACTTTCAAATTCCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTGGCTACAAATCAGGAAAATAATTCTACTTTCAAATTCCTCTG  200

seq1  GAATCACCTTTTTAATCCAAATCTCATAAAGTACATGTATATAAAAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACCTTTTTAATCCAAATCTCATAAAGTACATGTATATAAAAATCA  250

seq1  GTCCTCACACCAGAAATTCTGTTCAGATAAACCAAGGTAGCCAAACATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCACACCAGAAATTCTGTTCAGATAAACCAAGGTAGCCAAACATAG  300

seq1  TTTCAGTGTGTAAATAGATTCAGTCTACAGCAGGTTCTCACCTATAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGTGTAAATAGATTCAGTCTACAGCAGGTTCTCACCTATAGAAA  350

seq1  GATAGCCAGGATCACTTTTATCCCTTCATCTGAATCTTCTTTCTTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCAGGATCACTTTTATCCCTTCATCTGAATCTTCTTTCTTTTGTT  400

seq1  TAACTTCAGTTCTAGTCCATTTCAAACACAGGCTTCAGGATTAGGTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCAGTTCTAGTCCATTTCAAACACAGGCTTCAGGATTAGGTCAGG  450

seq1  CAAACAGGATGACTAAGAAAACTACTGATGGGAGAGATTATCATAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGGATGACTAAGAAAACTACTGATGGGAGAGATTATCATAATGAA  500

seq1  CATACCCTGGATACCACTAAATGAAGCAATCTCAGCACTTGTAACTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCTGGATACCACTAAATGAAGCAATCTCAGCACTTGTAACTTTCC  550

seq1  CACTGCCACTCATTGATTCATTTACTCGTTCGCCAACAGATGTTTGTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCACTCATTGATTCATTTACTCGTTCGCCAACAGATGTTTGTTAC  600

seq1  AGGACACATAGAGGCTAGCACAGTAAGGAAGGGAGACATAACAGTTTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACATAGAGGCTAGCACAGTAAGGAAGGGAGACATAACAGTTTCAC  650

seq1  CCGTTGAGCTCGCAGCAGATTCTGTAGCCTCTCCTTTTTATTTCTCTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGAGCTCGCAGCAGATTCTGTAGCCTCTCCTTTTTATTTCTCTTAG  700

seq1  ATAACCGCCCTCTGTAGTAGGTCTATATCATTGCACATAGCCATTTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCGCCCTCTGTAGTAGGTCTATATCATTGCACATAGCCATTTTACA  750

seq1  GGCAAAGTCTATTTCCTGACTAGTAGGAGGTCCAAGCACCTATAGAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGTCTATTTCCTGACTAGTAGGAGGTCCAAGCACCTATAGAAAGC  800

seq1  TAAATCTTTGCCTCAAAATCTTTGTCATTGAATAAATTTGGTGAAATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTTGCCTCAAAATCTTTGTCATTGAATAAATTTGGTGAAATTTA  850

seq1  TGGAATGGACAAGACTTTTGACTTTCTGTGTCTTATGAAGGCACAGATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGGACAAGACTTTTGACTTTCTGTGTCTTATGAAGGCACAGATTA  900

seq1  TATCAACCACAGAAATACACTTTCCTGGCTCTATGCTCTCAATTGCACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACCACAGAAATACACTTTCCTGGCTCTATGCTCTCAATTGCACCT  950

seq1  TCCATTATGCATTAATGTGCCTCTAGGATAGTATCTACCACAGAGCAAGT  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATGCA-TAATGTGCCTCTAGGATAGTATCTACCACAGAGCAAGT  999

seq1  GTTTCAATAGATGCATGCTATTGCTTTTATTCAGATCTTTCTAAAGCGGA  1050
      ||||| ||||||||||||||||||||||||||||||||||   |||||||
seq2  GTTTC-ATAGATGCATGCTATTGCTTTTATTCAGATCTTTTCTAAGCGGA  1048

seq1  CTTCTTTCCTATTCATGAGGAAATTCCTAAACAATGCTCTTAG-ATCTC-  1098
      |||||||||||||||||||| |||| ||||||||||||||||| ||||| 
seq2  CTTCTTTCCTATTCATGAGGGAATT-CTAAACAATGCTCTTAGAATCTCT  1097

seq1  ATTCTTCCCCCACTCCACAACTG-ACATGTTAGTGTCTCCATCTTTTACC  1147
      |||||| |||||||||||||||| ||||| ||| ||||||||| |||| |
seq2  ATTCTT-CCCCACTCCACAACTGAACATG-TAGGGTCTCCATC-TTTAAC  1144

seq1  TATAGTTCTCTCTCTCT-------CTCTCTCTCTCTCTCTCTC  1183
      |||||||||||||||||       |||||||||||||||||||
seq2  TATAGTTCTCTCTCTCTTCTTCTGCTCTCTCTCTCTCTCTCTC  1187

seq1: chr16_42308993_42310078
seq2: B6Ng01-040L03.g_66_1144 (reverse)

seq1  TTATCCTTCCATTCTGGGCCTGAAAGATACAGATTAGCAGACAGGCTGGT  50
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  TTATCCTTCCATCCTGGGCTTGAAAGATACAGATTAGCAGACAGGCTGGT  50

seq1  TCCTCTGCTACATTTCAATCATGGAGACTTGGTTTGGTGCTTCTGTGTGG  100
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  TCCTCTGCTACATTTCAATCATGGAGACTTGGTT--GTGCTTCTGTGTGG  98

seq1  TGACGATGGGCTAAGGAAAGCTGAAGAGTGTGGCCTGAACAGAGCAGATT  150
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  TGACGATGGGCT-AGGAAAGCTGAAGAGTGTGGCCTG-ACAGAGCAGATT  146

seq1  ATGCTTCCTGCCCCAGGAG-AAAAGCTCCTGTTGCATAATTTCCTTGACT  199
      |||||||||| |||||||| ||||||||||| |||||||||||| |||||
seq2  ATGCTTCCTG-CCCAGGAGAAAAAGCTCCTG-TGCATAATTTCC-TGACT  193

seq1  ATAATACCCAATATAAATGCAAATTAACTCTCACTGTTTCATCAAATCTA  249
      ||||||||||||||||||||||| |||||||||||| |||||||||||||
seq2  ATAATACCCAATATAAATGCAAA-TAACTCTCACTG-TTCATCAAATCTA  241

seq1  CTAAGTTATAGGCTACCTATTAGTCTTCTACAAAGTTTCAGTACGTGGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTATAGGCTACCTATTAGTCTTCTACAAAGTTTCAGTACGTGGAG  291

seq1  AAATACAGATAGCGCCCCCCCCCATCCAGGGTACGTTTCACCCTTCAGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGATAGCGCCCCCCCCCATCCAGGGTACGTTTCACCCTTCAGGC  341

seq1  AAATGCAGGATCCTAGTGCAACAT-CCCCGACACACTGCTCGCCATAGTT  398
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAATGCAGGATCCTAGTGCAACATCCCCCGACACACTGCTCGCCATAGTT  391

seq1  TAAGACCAAAATGAAATGTATGCAGAGTGAAGGAGGTGAGGATGCTGGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCAAAATGAAATGTATGCAGAGTGAAGGAGGTGAGGATGCTGGTG  441

seq1  ATGTAATCTGTGGTAACAGACATTTTTTAGTCAATTGTTTTACTACCGCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATCTGTGGTAACAGACATTTTTTAGTCAATTGTTTTACTACCGCG  491

seq1  AGTTGAATGATGTTTCTTTGACATTCAGGATGATCTTGACTGCTATATAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATGATGTTTCTTTGACATTCAGGATGATCTTGACTGCTATATAT  541

seq1  TCATTGTTGACATGCATCCTGGGGAGAGCAAATTGCTACAAAGACAATAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTGACATGCATCCTGGGGAGAGCAAATTGCTACAAAGACAATAA  591

seq1  ATTCACTAGTAGGAACACTGCCATCTGATTTATTTTCTCCAAGGTGTTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTAGTAGGAACACTGCCATCTGATTTATTTTCTCCAAGGTGTTAG  641

seq1  AGGTATATGACATGAGCTACGAGACTCCAGGTTTTAGGATCCCTGCCAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATATGACATGAGCTACGAGACTCCAGGTTTTAGGATCCCTGCCAGA  691

seq1  CTTTTCAGTGGTATATTAAAAAAAATTATCTGCTGTGCACAGGCCAAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGTGGTATATTAAAAAAAATTATCTGCTGTGCACAGGCCAAAAG  741

seq1  TTTGATTACTCTGATGCAATCAGACCTCGCTGAAGTCTTGTTGACATCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTACTCTGATGCAATCAGACCTCGCTGAAGTCTTGTTGACATCTA  791

seq1  AAGTGCACTTGCTCAAAGGTCCGTGGGGCTTGCGTGACTTCTCATCCTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCACTTGCTCAAAGGTCCGTGGGGCTTGCGTGACTTCTCATCCTGC  841

seq1  TCTCAGTGTAGAGCCTACTTCTTGCCTGAAAAACTCTAGAAACAAAAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGTAGAGCCTACTTCTTGCCTGAAAAACTCTAGAAACAAAAAAA  891

seq1  CCGGTTGCCGTCTCCTTTGAATATTGAGGTTTGTCTAACATCAGCAGAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTTGCCGTCTCCTTTGAATATTGAGGTTTGTCTAACATCAGCAGAGA  941

seq1  AAGTTAAAATCTGATGAATAAGAAATGCATCACATCACTAGAATCATTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAATCTGATGAATAAGAAATGCATCACATCACTAGAATCATTTC  991

seq1  CTAGGTCTCCCCAGACTTTCCTGCTGGACGTCTCACTGAATTTTCATAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCTCCCCAGACTTTCCTGCTGGACGTCTCACTGAATTTTCATAGT  1041

seq1  CTCTGACTGTGGGCACATTCCAGAACCGAAGAGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTGTGGGCACATTCCAGAACCGAAGAGAATTC  1079