BAC Information

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BAC

Clone NameB6Ng01-041A14
Chromosome16 (Build37)
Map Location 44,718,558 - 44,719,696
singlet/doubletsinglet
Overlap genenone
Upstream geneDrd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731
Downstream geneBC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041A14.bB6Ng01-041A14.g
ACCDH867818DH867819
length1,2091,126
definitionDH867818|Mus musculus domesticus DNA, BAC clone: B6Ng01-041A14, 5' end.DH867819|Mus musculus domesticus DNA, BAC clone: B6Ng01-041A14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacacaaagtattatgatcatattcacatctaactcctcctata
actccttccaaatccatacgccactttgttaacccacaaaacttgtgtct
gccttttaatagcccactggcttcaggttatgttgtctatatgcttctgg
gttggagcctaccaggagcaatacccttagagataactgactcactctcc
tcaagaaactattagctgtccatagctcctaggtttgaagagcagggact
cttgagccccattccattctatgttggaatattgactggcttggtcttgt
ttgcatcctatacaggaaactccatagctcctaggtttgaagaacaggga
ctcttgagccccattctgttctatgttggaatattgactggtttggtctt
atttgcatcctatacagaaaactccattgctatgagcttgtgaattcaga
gatcctgtcatgtccaaatgctttgtttctctgatcttccctgattggtg
acttttacaatatttctgcttttgtcttccttaaccagttgagagttatt
gctttaactacatttcactgaaaaaagaaactttctctaaagagatatga
gttgcactaacatggaaacagtgatgcaaattgaggaggtggttttatta
tgtgtccattttgtagaataatagagagtgagctgcccatcctggacaca
cgtagtgtaccaggtggctttaaatccaagcagaggtaattagcaagctt
tacaattttcagaccattagtggacccatgggcatcttattattcatgga
catcttagctgtgtcccatgttctagttattaggactagagcatctatga
atacagatggacacaagatctaggtcatcatacaacacatctatttctca
ttttctgaggacagccacattgctctccacagcagctgcacaatttgctc
ttctacaagtagaacaggaaagttccctgcccccgacatccactggcttt
attttcttatataagcaattctgcatggattaaggtaaaaatcccaaagt
attttaattgcacttacctaaaggttgagatggcaacagttttaaatatt
tatagccattgaatttctctcgaaaccccctattcagttcatgctccatt
ttcaatttggttataggactgttgatggggctgcaggtaatctcaatata
tgcggcaac
gaattctcggggagatcatgtgaacagggactgtgggaactcctgtctca
gacctggaccccagacttctcttccatcttcttcctctgagacaaagtca
ttaccttataaggttcacacttgagaaccacacaattgagttaaatataa
ataagtacaataaaaataaaatttacaaaaatatctcacaaatgttttag
gcaagtttataattatgtgtttggaccacattcataggtatcccaaagtg
aacatggcaaacaggccccaggttcgtgtctgaaatgaaatgtctcccat
caggctacagtaatttgttaaaaatggcctcaatgaatggatcacaacac
cctgggcacacgcctgactagtgatacttctttctccaacgagagatgga
ctctatttcctcattcctggaatttgcccatacagcttgttttgtccagt
agagtataatggaagttccatcttcgtctgagccgtaagaggacttccag
caccagcttttgctgataatgaattccagctcccagggaaaatattctgg
gtaatcccagattgtgtggaaagatcagagactggacttcttgcttccac
tgttttctcaactaccatggtgcaatgtttggggatggcaaggatcagac
acaaacaaagtttataaatctttaatttcttgttactgtgtatgacagag
atgaacaacactgtcctttgctcatctaagagtctatcttgttcaactta
aatatggaaattaagactatttctctacattggtgctaaaaccagtttcc
tagtccctataaaagacaaaataatgatttaataggctgtggcctattta
gttcctccagacaccttgatctatcagctaccagtggtcaaaacaatgca
gcaactttgtttcttatagccaaccactgcctaccgaccattgtctctat
gggagactgagctgagctcccactgaacctcgggagctcagttctgtagc
agtaccggtactaccctcgacctactgaaaacagacgtccagaaacctgt
caccctctcattgaacatttccatgcctcagactgagttgggctgacctt
ctgaaggctacaccttggagtggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_44718558_44719696
seq2: B6Ng01-041A14.g_69_1194

seq1  GAATTCT-GGGGAGATCATGTGAACAGGGACTGTGGGAACTCCTGTCTCA  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGGGGAGATCATGTGAACAGGGACTGTGGGAACTCCTGTCTCA  50

seq1  GACCTGGACCCCAGACTTCTCTTCCATCTTCTTCCTCTGAGACAAAGTCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGACCCCAGACTTCTCTTCCATCTTCTTCCTCTGAGACAAAGTCA  100

seq1  TTACCTTATAAGGTTCACACTTGAGAACCACACAATTGAGTTAAATATAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTATAAGGTTCACACTTGAGAACCACACAATTGAGTTAAATATAA  150

seq1  ATAAGTACAATAAAAATAAAATTTACAAAAATATCTCACAAATGTTTTAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTACAATAAAAATAAAATTTACAAAAATATCTCACAAATGTTTTAG  200

seq1  GCAAGTTTATAATTATGTGTTTGGACCACATTCATAGGTATCCCAAAGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTTATAATTATGTGTTTGGACCACATTCATAGGTATCCCAAAGTG  250

seq1  AACATGGCAAACAGGCCCCAGGTTCGTGTCTGAAATGAAATGTCTCCCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCAAACAGGCCCCAGGTTCGTGTCTGAAATGAAATGTCTCCCAT  300

seq1  CAGGCTACAGTAATTTGTTAAAAATGGCCTCAATGAATGGATCACAACAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTACAGTAATTTGTTAAAAATGGCCTCAATGAATGGATCACAACAC  350

seq1  CCTGGGCACACGCCTGACTAGTGATACTTCTTTCTCCAACGAGAGATGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCACACGCCTGACTAGTGATACTTCTTTCTCCAACGAGAGATGGA  400

seq1  CTCTATTTCCTCATTCCTGGAATTTGCCCATACAGCTTGTTTTGTCCAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTCCTCATTCCTGGAATTTGCCCATACAGCTTGTTTTGTCCAGT  450

seq1  AGAGTATAATGGAAGTTCCATCTTCGTCTGAGCCGTAAGAGGACTTCCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATAATGGAAGTTCCATCTTCGTCTGAGCCGTAAGAGGACTTCCAG  500

seq1  CACCAGCTTTTGCTGATAATGAATTCCAGCTCCCAGGGAAAATATTCTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTTTTGCTGATAATGAATTCCAGCTCCCAGGGAAAATATTCTGG  550

seq1  GTAATCCCAGATTGTGTGGAAAGATCAGAGACTGGACTTCTTGCTTCCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCCAGATTGTGTGGAAAGATCAGAGACTGGACTTCTTGCTTCCAC  600

seq1  TGTTTTCTCAACTACCATGGTGCAATGTTTGGGGATGGCAAGGATCAGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCAACTACCATGGTGCAATGTTTGGGGATGGCAAGGATCAGAC  650

seq1  ACAAACAAAGTTTATAAATCTTTAATTTCTTGTTACTGTGTATGACAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAGTTTATAAATCTTTAATTTCTTGTTACTGTGTATGACAGAG  700

seq1  ATGAACAACACTGTCCTTTGCTCATCTAAGAGTCTATCTTGTTCAACTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAACACTGTCCTTTGCTCATCTAAGAGTCTATCTTGTTCAACTTA  750

seq1  AATATGGAAATTAAGACTATTTCTCTACATTGGTGCTAAAACCAGTTTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGAAATTAAGACTATTTCTCTACATTGGTGCTAAAACCAGTTTCC  800

seq1  TAGTCCCTATAAAAGACAAAATAATGATTTAATAGGCTGTGGCCTATTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCTATAAAAGACAAAATAATGATTTAATAGGCTGTGGCCTATTTA  850

seq1  GTTCCTCCAGACACCTTGATCTATCAGCTACCAGTGGTCAAAACAATGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCCAGACACCTTGATCTATCAGCTACCAGTGGTCAAAACAATGCA  900

seq1  GCAACTTTGTTTCTTATAGCCAACCACTGCCTACCGACCATTGTCTCTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTTGTTTCTTATAGCCAACCACTGCCTACCGACCATTGTCTCTAT  950

seq1  GGGAGACTGAAGCTGAGCTCCCACTGAACCTCGGGAGCTCAGTTCTGTAG  999
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACTG-AGCTGAGCTCCCACTGAACCTCGGGAGCTCAGTTCTGTAG  999

seq1  CAGTACCGGTTACTACCACTCGACCTACTGAAGACAGACGTCACAGAACA  1049
      ||||||||| ||||||| |||||||||||||| ||||||||| |||||  
seq2  CAGTACCGG-TACTACC-CTCGACCTACTGAAAACAGACGTC-CAGAAAC  1046

seq1  CTGTCACCCTCTCATTGACACATTTCTCAGTGCCTCAGCACGGGGAGTTG  1099
      |||||||||||||||||| ||||||| || |||||||| ||   ||||||
seq2  CTGTCACCCTCTCATTGA-ACATTTC-CA-TGCCTCAG-AC--TGAGTTG  1090

seq1  TGTCTGAACTCTCTTGAAGGCTACACCCTTGGAGTTGAAC  1139
       | |||| || || ||||||||||| ||||||||| ||||
seq2  -GGCTGACCT-TC-TGAAGGCTACA-CCTTGGAGTGGAAC  1126