BAC Information

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BAC

Clone NameB6Ng01-041F14
Chromosome16 (Build37)
Map Location 30,836,866 - 30,979,426
singlet/doubletdoublet
Overlap geneAI480653
Upstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
Downstream geneCentb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041F14.bB6Ng01-041F14.g
ACCDH868037DH868038
length908468
definitionDH868037|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F14, 5' end.DH868038|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,836,866 - 30,837,775)(30,978,953 - 30,979,426)
sequence
gaattccagcacagttgacatttactgggctaggttcctggacatagagg
caatatttcttttatacaaaaatattttcaaataagggtactaaaataaa
aacgaaccaggattaaggccccagtatacaggacttcaaatatggcccca
ttttcctcctgggtactttctgggaatctcacaaataagactgggatggg
gaagtttggagaggacaggatgagcccctcacccaagaatctgattggag
cctttgccagcagaggagcaagaattctagcatcgaggctggaaggattg
ctcagtggttaaaagcactgactgatcttccagaggtcctgagttcaatg
gctcacaaccattcttagtgggacttaatgccctcttctggtgtgtctaa
tatatatataatccttaaaaaaatttagcatcaactgcttaatacctttt
tcccttcagagctgtaaattttctagccatctcaccagaaacctcacaag
aaaatatgtactaaccccactgtgtaatcaaaatttaccttatcaaatta
taattccaccccaggcatcttcagagccccctcaatttgtcaaaagataa
aaaagggatttcttagaacttttttgagatgaaacttgagagtaacaaaa
atagtatgtatatatatatattgcgaagccagttaattaaggctctcctt
tgagaagcccattgctgctcctgggtgtctctcactttcccctgctgtcc
cttagggaacacatacccacatgtaggtcttctccctcccctccccccgt
gccccccccaacctttgtcttaaccctgaagcttaagcctatgttaaggg
tttgtttgtctttggtttgtttgttgtttgttagattgaaccaattttag
ttgtgttt
ctgttgtttaaaccatccagcaggttgcactttggtccagcagccctagg
gagtgaatacggatccccctgctcctggcatggagagcatccggcaggtg
agagcgagcacaggccttttgaatggggctgctgtccaggagtgtagatc
tacaacatggtggcatctgctatagtgcagagacagattaggagaatcgc
cagacagggtgttttctaattctagatctggccatttttagttaagactt
cattgcctggtcagtattttggaaatatactttggggctgtggtgaagag
tgtactgcagatgaggctcgtcaccgtgccaggcttgctgtgccacagcc
ttcgtatcactcaggagtgctttaacagttgttatagaaagaaatcctgg
ctttgcttccctagggtgaagcacagcatgtttcgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_30836866_30837775
seq2: B6Ng01-041F14.b_45_952

seq1  GAATTCCAGCACAGTTGACATTTACTGGG-AAGGTTCCTGGACATAGAGG  49
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  GAATTCCAGCACAGTTGACATTTACTGGGCTAGGTTCCTGGACATAGAGG  50

seq1  CAATATTTCTTTTATACAAAAATATTTTCAAATAAGGGTACTAAAATAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTCTTTTATACAAAAATATTTTCAAATAAGGGTACTAAAATAAA  100

seq1  AACGAACCAGGATTAAGGCCCCAGTATACAGGACTTCAAATATGGCCCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAACCAGGATTAAGGCCCCAGTATACAGGACTTCAAATATGGCCCCA  150

seq1  TTTTCCTCCTGGGTACTTTCTGGGAATCTCACAAATAAGACTGGGATGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCCTGGGTACTTTCTGGGAATCTCACAAATAAGACTGGGATGGG  200

seq1  GAAGTTTGGAGAGGACAGGATGAGCCCCTCACCCAAGAATCTGATTGGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTGGAGAGGACAGGATGAGCCCCTCACCCAAGAATCTGATTGGAG  250

seq1  CCTTTGCCAGCAGAGGAGCAAGAATTCTAGCATCGAGGCTGGAAGGATTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCAGCAGAGGAGCAAGAATTCTAGCATCGAGGCTGGAAGGATTG  300

seq1  CTCAGTGGTTAAAAGCACTGACTGATCTTCCAGAGGTCCTGAGTTCAATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGTTAAAAGCACTGACTGATCTTCCAGAGGTCCTGAGTTCAATG  350

seq1  GCTCACAACCATTCTTAGTGGGACTTAATGCCCTCTTCTGGTGTGTCTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAACCATTCTTAGTGGGACTTAATGCCCTCTTCTGGTGTGTCTAA  400

seq1  TATATATATAATCCTTAAAAAAATTTAGCATCAACTGCTTAATACCTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATAATCCTTAAAAAAATTTAGCATCAACTGCTTAATACCTTTT  450

seq1  TCCCTTCAGAGCTGTAAATTTTCTAGCCATCTCACCAGAAACCTCACAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCAGAGCTGTAAATTTTCTAGCCATCTCACCAGAAACCTCACAAG  500

seq1  AAAATATGTACTAACCCCACTGTGTAATCAAAATTTACCTTATCAAATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTACTAACCCCACTGTGTAATCAAAATTTACCTTATCAAATTA  550

seq1  TAATTCCACCCCAGGCATCTTCAGAGCCCCCTCAATTTGTCAAAAGATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCACCCCAGGCATCTTCAGAGCCCCCTCAATTTGTCAAAAGATAA  600

seq1  AAAAGGGATTTCTTAGAACTTTTTTGAGATGAAACTTGAGAGTAACAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGATTTCTTAGAACTTTTTTGAGATGAAACTTGAGAGTAACAAAA  650

seq1  ATAGTATGTATATATATATATTGCGAAGCCAGTTAATTAAGGCTCTCCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATGTATATATATATATTGCGAAGCCAGTTAATTAAGGCTCTCCTT  700

seq1  TGAGAAGCCCATTGCTGCTCCTGGGTGTCTCTCACTTTCCCCTGCTGTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCCCATTGCTGCTCCTGGGTGTCTCTCACTTTCCCCTGCTGTCC  750

seq1  CTTAGGGAACACATACCCACATGTAGGTCTTCTCCCTCCCCTCCCCCCGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGAACACATACCCACATGTAGGTCTTCTCCCTCCCCTCCCCCCGT  800

seq1  GCCCCCCCCAACCTTTGTCTTAACCCTGAAGCTTAAGCCTATGTTAAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCCCAACCTTTGTCTTAACCCTGAAGCTTAAGCCTATGTTAAGGG  850

seq1  TTTGTTTGTCTTTTGTTTGTTTGTTTGTTTGTTTAGATTGAAGCAAATTG  899
      ||||||||||||| ||||||||| ||||||| |||||||||| | |||| 
seq2  TTTGTTTGTCTTTGGTTTGTTTG-TTGTTTG-TTAGATTGAA-CCAATTT  897

seq1  TGATTGTGTTT  910
      |  ||||||||
seq2  TAGTTGTGTTT  908

seq1: chr16_30978953_30979426
seq2: B6Ng01-041F14.g_70_543 (reverse)

seq1  ACACACACACACACACACACACACACACACACACGAAACATGCTGTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACGAAACATGCTGTGCTT  50

seq1  CACCCTAGGGAAGCAAAGCCAGGATTTCTTTCTATAACAACTGTTAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTAGGGAAGCAAAGCCAGGATTTCTTTCTATAACAACTGTTAAAGC  100

seq1  ACTCCTGAGTGATACGAAGGCTGTGGCACAGCAAGCCTGGCACGGTGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGAGTGATACGAAGGCTGTGGCACAGCAAGCCTGGCACGGTGACG  150

seq1  AGCCTCATCTGCAGTACACTCTTCACCACAGCCCCAAAGTATATTTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCATCTGCAGTACACTCTTCACCACAGCCCCAAAGTATATTTCCAA  200

seq1  AATACTGACCAGGCAATGAAGTCTTAACTAAAAATGGCCAGATCTAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGACCAGGCAATGAAGTCTTAACTAAAAATGGCCAGATCTAGAAT  250

seq1  TAGAAAACACCCTGTCTGGCGATTCTCCTAATCTGTCTCTGCACTATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACACCCTGTCTGGCGATTCTCCTAATCTGTCTCTGCACTATAGC  300

seq1  AGATGCCACCATGTTGTAGATCTACACTCCTGGACAGCAGCCCCATTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCACCATGTTGTAGATCTACACTCCTGGACAGCAGCCCCATTCAA  350

seq1  AAGGCCTGTGCTCGCTCTCACCTGCCGGATGCTCTCCATGCCAGGAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGTGCTCGCTCTCACCTGCCGGATGCTCTCCATGCCAGGAGCAG  400

seq1  GGGGATCCGTATTCACTCCCTAGGGCTGCTGGACCAAAGTGCAACCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCCGTATTCACTCCCTAGGGCTGCTGGACCAAAGTGCAACCTGCT  450

seq1  GGATGGTTTAAACAACAGGAATTC  474
      ||||||||||||||||||||||||
seq2  GGATGGTTTAAACAACAGGAATTC  474