BAC Information

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BAC

Clone NameB6Ng01-042F05
Chromosome16 (Build37)
Map Location 38,170,929 - 38,308,086
singlet/doubletdoublet
Overlap geneGsk3b, Nr1i2, 4932425I24Rik
Upstream geneStxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713
Downstream geneCox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042F05.bB6Ng01-042F05.g
ACCDH868737DH868738
length9331,131
definitionDH868737|Mus musculus domesticus DNA, BAC clone: B6Ng01-042F05, 5' end.DH868738|Mus musculus domesticus DNA, BAC clone: B6Ng01-042F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,307,154 - 38,308,086)(38,170,929 - 38,172,077)
sequence
gaattccttcctgtaccttgctcccctgtttcgatgtattatagaattaa
tttaattaatttccccctcccgaccttccccccacctcccatcattgtcc
atctgggccacacaagggtaagaaaagaggaagcacctgcttgctggggg
ccacagctgtaactcagcctgcacaaaccgaactggggagctgctaagtc
cccagacttgctgctcatctggtgtttgactcttagagcgttataaaccg
agagggattccctaaatttctactaagttttaaaacagttatttgagttt
gcatagagtgagcaatatctgttttataaacactaagtaacaacagctct
gacctcctgccatgtgccctcattatatcctgtgtgtatcctctggggtt
cttttttcttttctttttctttcttactaggaatctcattttatcgggaa
gtaatttgagtctgaggggtgttcccctaacaaccagcaggccttgtgct
gctcctgactttacaagctttggtgggatgatctctgctgctgcggcgct
cacaccctataaagccctctttcatgggtctccctccccagggctgagac
tcagacctgacaagtccagggcagctggcgagcacctgagctcagcgctg
tgaatcaggcagtgcccttcagacagcccattgtgtactatgaggcagga
ggcacattccttgaaaaagcaaactggcctcaaatactgtcaaatactgc
catctcagttaaaagttttttttttttttttttaaagggggcacagtaat
tgagtggaggactctagttccttaacatgaccctgtagttactaccttgt
ctgtgtccgatgcagaaagcagcacactgaaagcacacatccacacatcc
atacccaaacacacagagagaggggaggaaggg
gaattcaaagcacaaaccaggattctgaacccaagatacacagctgatgg
tagcgtggaaatgccaatgagaagaatgaactttaagggatcttcctggc
gatgccggggaggcagcttcacagctcttgttactccaactggagggact
accttagttcaagtgtccagagcccgcagttaaagcttgacatggctgcg
tatacttacaggccagatctgtgggatcgtgggacacatgggttcctggg
gattgatctctgccggcctagcttcaaattcagtgagagagcacgtctca
gggaactgatgagctagacaccgcacacccttttctggcctcctcacatg
gacatgggcttgtgttcttgcacatgtgggtttctcccccaacccacatc
cccaacacacaatttaaaatgaaagcaaattttctgagctcactgcactg
gcgcctgtctagaacctgagtacatagcagcagcccgtcttaaactctaa
gctccttagaaatggaggggaagggattttctacttaaagtaaacgtgtc
tttagttctcaagcacatttctattttttattcctctttctgtgttgttt
atgtgcttatggaaccctctgataattcatctgcttattaggggaaggaa
aatcatgtggaaatggattagaagagaaagggaagtaggggcttttgctt
agccagggaaacaccgaaagatctgtttctggtcacattgaattctgtga
gagtaagggttagcctgtgctgggatgccacccccttcctcctccctggt
ctcctcagtcccctccttgctgcctctcactgcccgcccgcctcccctgt
gcagtctttacccacaccgcccctccatcactctttctggtttaaagaag
caaggcagtaaccaagcaacaccaagcacctgaccccctcccccattact
ccaatgaatcacgtgacatttggacttcagattttatactgtaatgctaa
tgtgttaggctccgtttcctttggactttacagaaagcttctgtaaacct
tttaccatttttcactaactttatgtgagggtgcatactattatcttacc
tcagactttaatacaagaggtatttagcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_38307154_38308086
seq2: B6Ng01-042F05.b_44_976 (reverse)

seq1  CCCTTCCTCCCCTCTCTCTGTGTGTTTGGGTATGGATGTGTGGATGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCCCCTCTCTCTGTGTGTTTGGGTATGGATGTGTGGATGTGTG  50

seq1  CTTTCAGTGTGCTGCTTTCTGCATCGGACACAGACAAGGTAGTAACTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTGTGCTGCTTTCTGCATCGGACACAGACAAGGTAGTAACTACA  100

seq1  GGGTCATGTTAAGGAACTAGAGTCCTCCACTCAATTACTGTGCCCCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATGTTAAGGAACTAGAGTCCTCCACTCAATTACTGTGCCCCCTTT  150

seq1  -AAAAAAAAAAAAAAAAACTTTTAACCTGAGATGGCAGTATTTGACAGTA  199
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAACTTTTAA-CTGAGATGGCAGTATTTGACAGTA  199

seq1  TTTGAGGCCAGTTTGCTTTTTCAAGGAATGTGCCTCCTGCCTCATAGTAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCCAGTTTGCTTTTTCAAGGAATGTGCCTCCTGCCTCATAGTAC  249

seq1  ACAATGGGCTGTCTGAAGGGCACTGCCTGATTCACAGCGCTGAGCTCAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGGCTGTCTGAAGGGCACTGCCTGATTCACAGCGCTGAGCTCAGG  299

seq1  TGCTCGCCAGCTGCCCTGGACTTGTCAGGTCTGAGTCTCAGCCCTGGGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGCCAGCTGCCCTGGACTTGTCAGGTCTGAGTCTCAGCCCTGGGGA  349

seq1  GGGAGACCCATGAAAGAGGGCTTTATAGGGTGTGAGCGCCGCAGCAGCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACCCATGAAAGAGGGCTTTATAGGGTGTGAGCGCCGCAGCAGCAG  399

seq1  AGATCATCCCACCAAAGCTTGTAAAGTCAGGAGCAGCACAAGGCCTGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATCCCACCAAAGCTTGTAAAGTCAGGAGCAGCACAAGGCCTGCTG  449

seq1  GTTGTTAGGGGAACACCCCTCAGACTCAAATTACTTCCCGATAAAATGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAGGGGAACACCCCTCAGACTCAAATTACTTCCCGATAAAATGAG  499

seq1  ATTCCTAGTAAGAAAGAAAAAGAAAAGAAAAAAGAACCCCAGAGGATACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAGTAAGAAAGAAAAAGAAAAGAAAAAAGAACCCCAGAGGATACA  549

seq1  CACAGGATATAATGAGGGCACATGGCAGGAGGTCAGAGCTGTTGTTACTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGATATAATGAGGGCACATGGCAGGAGGTCAGAGCTGTTGTTACTT  599

seq1  AGTGTTTATAAAACAGATATTGCTCACTCTATGCAAACTCAAATAACTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTATAAAACAGATATTGCTCACTCTATGCAAACTCAAATAACTGT  649

seq1  TTTAAAACTTAGTAGAAATTTAGGGAATCCCTCTCGGTTTATAACGCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACTTAGTAGAAATTTAGGGAATCCCTCTCGGTTTATAACGCTCT  699

seq1  AAGAGTCAAACACCAGATGAGCAGCAAGTCTGGGGACTTAGCAGCTCCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCAAACACCAGATGAGCAGCAAGTCTGGGGACTTAGCAGCTCCCC  749

seq1  AGTTCGGTTTGTGCAGGCTGAGTTACAGCTGTGGCCCCCAGCAAGCAGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGGTTTGTGCAGGCTGAGTTACAGCTGTGGCCCCCAGCAAGCAGGT  799

seq1  GCTTCCTCTTTTCTTACCCTTGTGTGGCCCAGATGGACAATGATGGGAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCTTTTCTTACCCTTGTGTGGCCCAGATGGACAATGATGGGAGG  849

seq1  TGGGGGGAAGGTCGGGAGGGGGAAATTAATTAAATTAATTCTATAATACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGAAGGTCGGGAGGGGGAAATTAATTAAATTAATTCTATAATACA  899

seq1  TCGAAACAGGGGAGCAAGGTACAGGAAGGAATTC  933
      ||||||||||||||||||||||||||||||||||
seq2  TCGAAACAGGGGAGCAAGGTACAGGAAGGAATTC  933

seq1: chr16_38170929_38172077
seq2: B6Ng01-042F05.g_67_1197

seq1  GAATTCAAAGCACAAACCAGGATTCTGAACCCAAGATACACAGCTGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCACAAACCAGGATTCTGAACCCAAGATACACAGCTGATGG  50

seq1  TAGCGTGGAAATGCCAATGAGAAGAATGAACTTTAAGGGATCTTCCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTGGAAATGCCAATGAGAAGAATGAACTTTAAGGGATCTTCCTGGC  100

seq1  GATGCCGGGGAGGCAGCTTCACAGCTCTTGTTACTCCAACTGGAGGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCGGGGAGGCAGCTTCACAGCTCTTGTTACTCCAACTGGAGGGACT  150

seq1  ACCTTAGTTCAAGTGTCCAGAGCCCGCAGTTAAAGCTTGACATGGCTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGTTCAAGTGTCCAGAGCCCGCAGTTAAAGCTTGACATGGCTGCG  200

seq1  TATACTTACAGGCCAGATCTGTGGGATCGTGGGACACATGGGTTCCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTACAGGCCAGATCTGTGGGATCGTGGGACACATGGGTTCCTGGG  250

seq1  GATTGATCTCTGCCGGCCTAGCTTCAAATTCAGTGAGAGAGCACGTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATCTCTGCCGGCCTAGCTTCAAATTCAGTGAGAGAGCACGTCTCA  300

seq1  GGGAACTGATGAGCTAGACACCGCACACCCTTTTCTGGCCTCCTCACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTGATGAGCTAGACACCGCACACCCTTTTCTGGCCTCCTCACATG  350

seq1  GACATGGGCTTGTGTTCTTGCACATGTGGGTTTCTCCCCCAACCCACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGGCTTGTGTTCTTGCACATGTGGGTTTCTCCCCCAACCCACATC  400

seq1  CCCAACACACAATTTAAAATGAAAGCAAATTTTCTGAGCTCACTGCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACACAATTTAAAATGAAAGCAAATTTTCTGAGCTCACTGCACTG  450

seq1  GCGCCTGTCTAGAACCTGAGTACATAGCAGCAGCCCGTCTTAAACTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTGTCTAGAACCTGAGTACATAGCAGCAGCCCGTCTTAAACTCTAA  500

seq1  GCTCCTTAGAAATGGAGGGGAAGGGATTTTCTACTTAAAGTAAACGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTAGAAATGGAGGGGAAGGGATTTTCTACTTAAAGTAAACGTGTC  550

seq1  TTTAGTTCTCAAGCACATTTCTATTTTTTATTCCTCTTTCTGTGTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCTCAAGCACATTTCTATTTTTTATTCCTCTTTCTGTGTTGTTT  600

seq1  ATGTGCTTATGGAACCCTCTGATAATTCATCTGCTTATTAGGGGAAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTTATGGAACCCTCTGATAATTCATCTGCTTATTAGGGGAAGGAA  650

seq1  AATCATGTGGAAATGGATTAGAAGAGAAAGGGAAGTAGGGGCTTTTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGTGGAAATGGATTAGAAGAGAAAGGGAAGTAGGGGCTTTTGCTT  700

seq1  AGCCAGGGAAACACCGAAAGATCTGTTTCTGGTCACATTGAATTCTGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGAAACACCGAAAGATCTGTTTCTGGTCACATTGAATTCTGTGA  750

seq1  GAGTAAGGGTTAGCCTGTGCTGGGATGCCACCCCCTTCCTCCTCCCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGGGTTAGCCTGTGCTGGGATGCCACCCCCTTCCTCCTCCCTGGT  800

seq1  CTCCTCAGTCCCCTCCTTGCTGCCTCTCACTGCCCGCCCGCCTCCCCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGTCCCCTCCTTGCTGCCTCTCACTGCCCGCCCGCCTCCCCTGT  850

seq1  GCAGTCTTTACCCACACCGCCCCTCCATCACTCTTCCTGGTTTAAAGAAG  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCAGTCTTTACCCACACCGCCCCTCCATCACTCTTTCTGGTTTAAAGAAG  900

seq1  CAAGGCAAGTAACCAAGCAACAACCAAAGCACCTGACCCCCTCCCCCATT  950
      |||||| |||||||||||||||  | ||||||||||||||||||||||||
seq2  CAAGGC-AGTAACCAAGCAACA--CCAAGCACCTGACCCCCTCCCCCATT  947

seq1  ACTCCAAATGAAATCACGTGACATTTGGACTTCAGATTTTATACTTGTAA  1000
      ||||| |||| ||||||||||||||||||||||||||||||||| |||||
seq2  ACTCC-AATG-AATCACGTGACATTTGGACTTCAGATTTTATAC-TGTAA  994

seq1  TGTCTAATGTTGTTAGGCTCACGTTTCCTTTTGACTTTACAGAAAGCTTC  1050
      || |||||| |||||||||| |||||||||| ||||||||||||||||||
seq2  TG-CTAATG-TGTTAGGCTC-CGTTTCCTTTGGACTTTACAGAAAGCTTC  1041

seq1  TAGTATAACCATTTTTAACAATTTTCACTAAACTTTATGT-AGGTGTCAT  1099
      | ||| ||||  ||||| || |||||||| |||||||||| |||   |||
seq2  T-GTA-AACC--TTTTACCATTTTTCACT-AACTTTATGTGAGGGTGCAT  1086

seq1  TAACTATTATTCTTACCTCAGACCTATAATACAAGAAGGTATTTAGCTTG  1149
        ||||||| |||||||||||| || ||||||||| ||||||||||||||
seq2  --ACTATTA-TCTTACCTCAGA-CTTTAATACAAG-AGGTATTTAGCTTG  1131