BAC Information

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BAC

Clone NameB6Ng01-043C21
Chromosome16 (Build37)
Map Location 65,457,565 - 65,595,311
singlet/doubletdoublet
Overlap genePou1f1, Chmp2b
Upstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
Downstream geneEG383186, Vgll3, LOC664846, LOC100039035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043C21.bB6Ng01-043C21.g
ACCDH869322DH869323
length1,0141,020
definitionDH869322|Mus musculus domesticus DNA, BAC clone: B6Ng01-043C21, 5' end.DH869323|Mus musculus domesticus DNA, BAC clone: B6Ng01-043C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,594,295 - 65,595,311)(65,457,565 - 65,458,590)
sequence
gaattcctggtttcaacagtagaacactgcctgaacttgtagtggaagcc
atgcccattgttctgctttctgcaacgtggatgttaattaaagttgctga
acaaggcagcaatgagtgtgcatactatcttgttgatgtgtatgtggact
gtaggtacatatgtatacaagcacacagacatcatcatgcaacaagtagg
aacttgtaccactctctttcatccattttttctcttttataatctgtatt
ttttcactaatagagttttcttatttaagccagaaataataaaaaaaaaa
attcctgtcatctcttcatagttactccacatctatgatagccaaccgaa
taatacagatactaactacctgatgtctctacaatccgagatacctcatc
tctcctcacaatcactggcaaatatgaaggtgattgtgacgatgttgtag
catgcggccctgaaatccggctcatccttttgctgtctactgccttcaac
agggaacatcctaaatcaaaatattatatacttcatttatcttcctaaaa
ttagacagtaactctttgtggtcttcaatatcaaatttcaaagccatcta
aacatccaaaggagtttatgagtccctctgtattcagcttatcaactatt
gccacagttctagaacaaaatgcaagagcaatctgggaccatattccaaa
agtggatagaaaggaaaagggaggagatgagttggctctggtgtctgtaa
agacatcctagtttcccacagaaacacactactactactactactactac
tactactactactactactactacttctactctgaaaatagaagggtgtc
tctcttctcttgatctaagctgagaatcaggatcttcaacaaaattaggt
tctgaatctcattccagcactatgctttaaaatggacttaatagcagctt
taaaaaaagctaattctggctcttaggctcttgtctttcctcttgcccct
tgctccccttttct
gaattctcgattattcacgctgggtggaaaggaaaaagagaatgaattat
attttttttaaaaaaattcaaatgtagctttgtagtgaagttacacacac
tcaaagaccccaggagaccaacagaggtcagtgtgaaaaactcctaagcc
agtaacttattcaagcagatggtttactcagttttatgcactaaaatcta
tgtggaataaggaactgagaggaagacatacctttttttttttttttttt
tttttaagtattgcacaactattctttaggaagttttttttttttttcca
ttttttattaggtatttagctcatttacatttccaatgctataccaaaag
tcccccttacccacccacccccactcccctacccacccactccccccctt
tggccctggcgttcccctgtaccggggcacacaaagtctgcgtgtccaat
gggcctctctttccagtgatggccgactaggccatcttttgatacatatg
cagctagagtcaagagctcaggggtactggttagttcataatgttgttcc
acctatagggttgaagatccctttagctccttgggtactttctctagctc
ctccattgggagccctgtgatccatccattagctgactgtgagcatccac
ttctgtgtttgctaggccccggcatagtctcacaagagacagctacatct
gggtcctttcgataaaatcttgctagtatatgcaatggtgtcagcgtttg
gatgctgattatgggggtggatccctggatatggcagtctctacatggtc
catcctttcatctcagctccaaactttgtttctgtaacttcttccatggg
tgtttgtacagatccaattaagtcatatctatatatgagccactaaagaa
aagaatttgggttttaagaaaagataaaagctcatacagctgttgaccag
atacttagtgattaatctcacgtctctcctagttggttaaaaggaagttt
tagtgttcgctttcaagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_65594295_65595311
seq2: B6Ng01-043C21.b_47_1060 (reverse)

seq1  AGAAAAGGGGAGCAAGGGGGCAAGA-GAAAGACAAGAGCCTAAGAGCCAG  49
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  AGAAAAGGGGAGCAA-GGGGCAAGAGGAAAGACAAGAGCCTAAGAGCCAG  49

seq1  AATTAGCTTTTTTTTAAAGCTGCTATTAAGTCCATTTTTAAAAGCATAGT  99
      ||||||| ||||||||||||||||||||||||||||||  ||||||||||
seq2  AATTAGC-TTTTTTTAAAGCTGCTATTAAGTCCATTTT--AAAGCATAGT  96

seq1  GCTGGAATGAGATTCAGAACCTAATTTTGTTGAAGATCCTGATTCTCAGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATGAGATTCAGAACCTAATTTTGTTGAAGATCCTGATTCTCAGC  146

seq1  TTAGATCAAGAGAAGAGAGACACCCTTCTATTTTCAGAGTAGAAGTAGTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCAAGAGAAGAGAGACACCCTTCTATTTTCAGAGTAGAAGTAGTA  196

seq1  GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTGTTTCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTGTTTCTG  246

seq1  TGGGAAACTAGGATGTCTTTACAGACACCAGAGCCAACTCATCTCCTCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAACTAGGATGTCTTTACAGACACCAGAGCCAACTCATCTCCTCCC  296

seq1  TTTTCCTTTCTATCCACTTTTGGAATATGGTCCCAGATTGCTCTTGCATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTCTATCCACTTTTGGAATATGGTCCCAGATTGCTCTTGCATT  346

seq1  TTGTTCTAGAACTGTGGCAATAGTTGATAAGCTGAATACAGAGGGACTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTAGAACTGTGGCAATAGTTGATAAGCTGAATACAGAGGGACTCA  396

seq1  TAAACTCCTTTGGATGTTTAGATGGCTTTGAAATTTGATATTGAAGACCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCCTTTGGATGTTTAGATGGCTTTGAAATTTGATATTGAAGACCA  446

seq1  CAAAGAGTTACTGTCTAATTTTAGGAAGATAAATGAAGTATATAATATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGTTACTGTCTAATTTTAGGAAGATAAATGAAGTATATAATATTT  496

seq1  TGATTTAGGATGTTCCCTGTTGAAGGCAGTAGACAGCAAAAGGATGAGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAGGATGTTCCCTGTTGAAGGCAGTAGACAGCAAAAGGATGAGCC  546

seq1  GGATTTCAGGGCCGCATGCTACAACATCGTCACAATCACCTTCATATTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCAGGGCCGCATGCTACAACATCGTCACAATCACCTTCATATTTG  596

seq1  CCAGTGATTGTGAGGAGAGATGAGGTATCTCGGATTGTAGAGACATCAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATTGTGAGGAGAGATGAGGTATCTCGGATTGTAGAGACATCAGG  646

seq1  TAGTTAGTATCTGTATTATTCGGTTGGCTATCATAGATGTGGAGTAACTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGTATCTGTATTATTCGGTTGGCTATCATAGATGTGGAGTAACTA  696

seq1  TGAAGAGATGACAGGAATTTTTTTTTTTATTATTTCTGGCTTAAATAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGATGACAGGAATTTTTTTTTTTATTATTTCTGGCTTAAATAAGA  746

seq1  AAACTCTATTAGTGAAAAAATACAGATTATAAAAGAGAAAAAATGGATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTATTAGTGAAAAAATACAGATTATAAAAGAGAAAAAATGGATGA  796

seq1  AAGAGAGTGGTACAAGTTCCTACTTGTTGCATGATGATGTCTGTGTGCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTGGTACAAGTTCCTACTTGTTGCATGATGATGTCTGTGTGCTT  846

seq1  GTATACATATGTACCTACAGTCCACATACACATCAACAAGATAGTATGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATATGTACCTACAGTCCACATACACATCAACAAGATAGTATGCA  896

seq1  CACTCATTGCTGCCTTGTTCAGCAACTTTAATTAACATCCACGTTGCAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTGCTGCCTTGTTCAGCAACTTTAATTAACATCCACGTTGCAGA  946

seq1  AAGCAGAACAATGGGCATGGCTTCCACTACAAGTTCAGGCAGTGTTCTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAACAATGGGCATGGCTTCCACTACAAGTTCAGGCAGTGTTCTAC  996

seq1  TGTTGAAACCAGGAATTC  1017
      ||||||||||||||||||
seq2  TGTTGAAACCAGGAATTC  1014

seq1: chr16_65457565_65458590
seq2: B6Ng01-043C21.g_65_1084

seq1  GAATTCTCGATTATTCACGCTGGGTGGAAAGGAAAAAGAGAATGAATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGATTATTCACGCTGGGTGGAAAGGAAAAAGAGAATGAATTAT  50

seq1  ATTTTTTTTAAAAAAATTCAAATGTAGCTTTGTAGTGAAGTTACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTAAAAAAATTCAAATGTAGCTTTGTAGTGAAGTTACACACAC  100

seq1  TCAAAGACCCCAGGAGACCAACAGAGGTCAGTGTGAAAAACTCCTAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACCCCAGGAGACCAACAGAGGTCAGTGTGAAAAACTCCTAAGCC  150

seq1  AGTAACTTATTCAAGCAGATGGTTTACTCAGTTTTATGCACTAAAATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTATTCAAGCAGATGGTTTACTCAGTTTTATGCACTAAAATCTA  200

seq1  TGTGGAATAAGGAACTGAGAGGAAGACATACCTTTTTTTTTTTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATAAGGAACTGAGAGGAAGACATACCTTTTTTTTTTTTTTTTTT  250

seq1  TTTTTAAGTATTGCACAACTATTCTTTAGGAAGTTTTTTTTTTTTTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGTATTGCACAACTATTCTTTAGGAAGTTTTTTTTTTTTTTCCA  300

seq1  TTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAG  350

seq1  TCCCCCTTACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCCCTT  400

seq1  TGGCCCTGGCGTTCCCCTGTACCGGGGCACACAAAGTCTGCGTGTCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGGCGTTCCCCTGTACCGGGGCACACAAAGTCTGCGTGTCCAAT  450

seq1  GGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATG  500

seq1  CAGCTAGAGTCAAGAGCTCAGGGGTACTGGTTAGTTCATAATGTTGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGAGTCAAGAGCTCAGGGGTACTGGTTAGTTCATAATGTTGTTCC  550

seq1  ACCTATAGGGTTGAAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAGGGTTGAAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTC  600

seq1  CTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCAC  650

seq1  TTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCT  700

seq1  GGGTCCTTTCGATAAAATCTTGCTAGTATATGCAATGGTGTCAGCGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTTTCGATAAAATCTTGCTAGTATATGCAATGGTGTCAGCGTTTG  750

seq1  GATGCTGATTAT-GGGGTGGATCCCTGGATATGGCAGTCTCTACATGGTC  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATGCTGATTATGGGGGTGGATCCCTGGATATGGCAGTCTCTACATGGTC  800

seq1  CATCCTTTCATCTCAGCTCCAAACTTTGTTTCTGTAACTCCTTCCATGGG  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATCCTTTCATCTCAGCTCCAAACTTTGTTTCTGTAACTTCTTCCATGGG  850

seq1  TGTTTGTACAGATCCAATTTAAGTCATATCTATATATGAGCCACTAAAGA  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTTTGTACAGATCCAA-TTAAGTCATATCTATATATGAGCCACTAAAGA  899

seq1  AAAGAAATTGGGTTTTAAGAAAAGATAAGAGCTCATACAGCTGAATGACC  949
      |||||| ||||||||||||||||||||| ||||||||||||||  |||||
seq2  AAAGAATTTGGGTTTTAAGAAAAGATAAAAGCTCATACAGCTG-TTGACC  948

seq1  AGATACTTAGTGAATAAAATTCT-AGGTCTCTCCTAGTATGTATAAAAGG  998
      ||||||||||||| |||   ||| | |||||||||||| ||  |||||||
seq2  AGATACTTAGTGATTAA---TCTCACGTCTCTCCTAGT-TGGTTAAAAGG  994

seq1  AAGTTTTTGTTGCTCGCTTTCCTAGTTT  1026
      ||||||| | || ||||||| | |||||
seq2  AAGTTTTAG-TGTTCGCTTT-CAAGTTT  1020