BAC Information

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BAC

Clone NameB6Ng01-044D21
Chromosome16 (Build37)
Map Location 15,800,655 - 15,942,181
singlet/doubletdoublet
Overlap genePrkdc, 2410018G20Rik, Cebpd, 2310008H04Rik
Upstream geneEfcab1, LOC100042737, LOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4
Downstream geneLOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044D21.bB6Ng01-044D21.g
ACCDH870054DH870055
length1,1281,081
definitionDH870054|Mus musculus domesticus DNA, BAC clone: B6Ng01-044D21, 5' end.DH870055|Mus musculus domesticus DNA, BAC clone: B6Ng01-044D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,800,655 - 15,801,798)(15,941,085 - 15,942,181)
sequence
gaattcctcatacggtttcaaaaagccaagcgcatttaggtctacacatg
taacttaattttacaaaggaacatattttgttgaagggaaaaacaagaat
taactttttctttgattcgtctctatttcttgacattggatatattacta
aggtctttcacaattcagattaaattcatatgtaaatgttaccttattac
agaccataacaagttgggaggttttgttacataaaataacaaaattggaa
aaacaccaaaaaaaaaaaaaaagttccagggtcctgttataaaacagagg
ggaaaaggatgctatttccttacatcccctagctccacagcacctctttg
ctacttaaaacacaaactgccactttaaaatacagtgaagaattagaggc
tttgttcagaaagcttctgaatgttgaactaacctttttcttaactttcc
tctaaaacatcaactttaaaaataattaattggagctgggcgtggtagct
cacacctttaatcccagcacttgggaggcagaggcaggcgaatttctgag
ttcgaggccaacctggtctacaaagtgagttccaggacagccagggctac
acagagaaaccctgtctcgaaaaaagaaaaaaaaaaattattgatcttat
tctctttataaggaagtaattttggaagctaggatgtagctcagtggtag
aactcttacctaccaaggccctgagttccatatccaacagttggcgagta
aataactttgaagaaatattttttataaattacccgcaaagcctcaaagt
aggtttattagaaacctatttattatttgaatatgattattttctattat
ttaaaagcaaataaacataatgccagatttatatcacttagaaaatgaat
acttgatggttacaggttttataggtttagtttgtagatgtcttgcattt
gataatcagatctgtgcttatgttgcttgaaattatatatttataaaata
ttatatattttatatattcagcttgtatttaatgccatttgttaactgct
gttataaccttctttataaccttagtcctactaaaatagtaccatctatt
tatcagtttgaagtgtcatttataattc
gaattcactgtgccctgtaaggtaactgctgttgtggaaaccctcttcag
gtgtgagccagctcatccctaagccacagctctatgtggaggtcagtgag
tgggagagcacatccagccagcatgaactaagggggaacggtactcagag
caggggcctggaggcatgacccaggcccatatagcaaaccagggcaaaaa
aacaaacaaaagtagcctccagctcctttggctatttgagataaaagcaa
tagtcaagtaaactaggaaagagtaatatcagttccccacctgtcccttt
gtagtataaccaagaaagagaactttatattgggtttcatagagatttta
atattaactttttaaagagtaaggtttagtaggcctatatctatctacta
aagggccactttgctgctatcttcctgtaagaacgctgagggccttctta
ataaatgcagcctgaacgtggacctcctttcacccccattccccctgctc
tcctttaaaggaaacagagagaaaccctggatatagaggtagctgggaag
tgaagaaacatgtaaatgactatgacagaaagcgagtgtcagtctaatat
aaaaggatatgggttcattatttctctcacagagacaataaaaacaacag
aaggggcagaaaaagcatgactagattttaaatgaaaaactaaatcttac
tgagatatctatatccatctcaacaggccagcatgtttgagagtacagag
gatcaatagtgtcatgaataatttccaggaattggtaatcctgaaattca
ccagagagaaaccaggtttatggttttgagccaaatttgaaccaaagttt
aattaaatactgacaaggattctgttcagtccactcttgggaatcccagc
gagccacattttataggggctttaaaaggtaaaccacaggccacagtatt
cctcaagtggctttgtatttccaaagcactgtttccagcattctaggaag
tacctgtcctagcaggggggcagatagatgacttgacactcacaaaatct
gtaggtgagcgctcctagatccatagagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_15800655_15801798
seq2: B6Ng01-044D21.b_45_1172

seq1  GAATTCCTCATACGGTTTCAAAAAGCCAAGCGCATTTAGGTCTACACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATACGGTTTCAAAAAGCCAAGCGCATTTAGGTCTACACATG  50

seq1  TAACTTAATTTTACAAAGGAACATATTTTGTTGAAGGGAAAAACAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAATTTTACAAAGGAACATATTTTGTTGAAGGGAAAAACAAGAAT  100

seq1  TAACTTTTTCTTTGATTCGTCTCTATTTCTTGACATTGGATATATTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTTCTTTGATTCGTCTCTATTTCTTGACATTGGATATATTACTA  150

seq1  AGGTCTTTCACAATTCAGATTAAATTCATATGTAAATGTTACCTTATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTCACAATTCAGATTAAATTCATATGTAAATGTTACCTTATTAC  200

seq1  AGACCATAACAAGTTGGGAGGTTTTGTTACATAAAATAACAAAATTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATAACAAGTTGGGAGGTTTTGTTACATAAAATAACAAAATTGGAA  250

seq1  AAACACCAAAAAAAAAAAAAAAGTTCCAGGGTCCTGTTATAAAACAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCAAAAAAAAAAAAAAAGTTCCAGGGTCCTGTTATAAAACAGAGG  300

seq1  GGAAAAGGATGCTATTTCCTTACATCCCCTAGCTCCACAGCACCTCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGATGCTATTTCCTTACATCCCCTAGCTCCACAGCACCTCTTTG  350

seq1  CTACTTAAAACACAAACTGCCACTTTAAAATACAGTGAAGAATTAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAAAACACAAACTGCCACTTTAAAATACAGTGAAGAATTAGAGGC  400

seq1  TTTGTTCAGAAAGCTTCTGAATGTTGAACTAACCTTTTTCTTAACTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAGAAAGCTTCTGAATGTTGAACTAACCTTTTTCTTAACTTTCC  450

seq1  TCTAAAACATCAACTTTAAAAATAATTAATTGGAGCTGGGCGTGGTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACATCAACTTTAAAAATAATTAATTGGAGCTGGGCGTGGTAGCT  500

seq1  CACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAG  550

seq1  TTCGAGGCCAACCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGCCAACCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAC  600

seq1  ACAGAGAAACCCTGTCTCGAAAAAAGAAAAAAAAAAATTATTGATCTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTGTCTCGAAAAAAGAAAAAAAAAAATTATTGATCTTAT  650

seq1  TCTCTTTATAAGGAAGTAATTTTGGAAGCTAGGATGTAGCTCAGTGGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTATAAGGAAGTAATTTTGGAAGCTAGGATGTAGCTCAGTGGTAG  700

seq1  AACTCTTACCTACCAAGGCCCTGAGTTCCATATCCAACAGTTGGCGAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTACCTACCAAGGCCCTGAGTTCCATATCCAACAGTTGGCGAGTA  750

seq1  AATAACTTTGAAGAAATATTTTTTATAAATTACCCGCAAAGCCTCAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTTGAAGAAATATTTTTTATAAATTACCCGCAAAGCCTCAAAGT  800

seq1  AGGTTTATTAGAAACCTATTTATTATTTGAATATGATTATTTTCTATTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATTAGAAACCTATTTATTATTTGAATATGATTATTTTCTATTAT  850

seq1  TTAAAAGCAAATAAACATAATGCCAGATTTATATCACTTAGAAAAATGAA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTAAAAGCAAATAAACATAATGCCAGATTTATATCACTTAG-AAAATGAA  899

seq1  TACTTGATGGTTACAGGTTTTATAGGTTTAGTTTGTAGATGTCTTGCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGATGGTTACAGGTTTTATAGGTTTAGTTTGTAGATGTCTTGCATT  949

seq1  TGATAATCAGATCTTGTGCTTATGTTGCTTGAAAATTATATATTTATTAA  1000
      ||||||||||||| ||||||||||||||||| |||||||||||||| |||
seq2  TGATAATCAGATC-TGTGCTTATGTTGCTTG-AAATTATATATTTA-TAA  996

seq1  AATATTAATTATATTTTAATATATTCAGCTTGTTATTTTAATGCCATTTG  1050
      |||||||  |||||||| |||||||||||||||   ||||||||||||||
seq2  AATATTA--TATATTTT-ATATATTCAGCTTGT--ATTTAATGCCATTTG  1041

seq1  TTAACTGCTGTTATAAACCTTCTTTATAACCCTTAGT-CTACTAAAAATA  1099
      |||||||||||||| |||||||||||||| ||||||| ||||| ||||||
seq2  TTAACTGCTGTTAT-AACCTTCTTTATAA-CCTTAGTCCTACT-AAAATA  1088

seq1  GTTAACCATTCTAATTTATCAGTTTAAATGTTCATTTATATATTC  1144
      ||  |||| ||| |||||||||||| ||   ||||||||| ||||
seq2  GT--ACCA-TCT-ATTTATCAGTTTGAAGTGTCATTTATA-ATTC  1128

seq1: chr16_15941085_15942181
seq2: B6Ng01-044D21.g_68_1148 (reverse)

seq1  ATACTCTATGAATCTAGGAGCGCTCACCTTACAGATTCTGTGAGTGTCAA  50
      |||||||||| ||||||||||||||||| |||||||| |||||||||| |
seq2  ATACTCTATGGATCTAGGAGCGCTCACC-TACAGATTTTGTGAGTGTC-A  48

seq1  AGTCATCTATCTGCCCCACCTGCCTAAGGACAAGGTAACTTCCTAGAATG  100
      ||||||||||||||||| |||||   ||||| |||| |||||||||||||
seq2  AGTCATCTATCTGCCCC-CCTGC--TAGGAC-AGGT-ACTTCCTAGAATG  93

seq1  CTGGAAACAGTGGCTTTTGGAAAATAACAAAGCCACTTGAGGAATACTGT  150
      ||||||||||||   ||||||||   ||||||||||||||||||||||||
seq2  CTGGAAACAGTG--CTTTGGAAA--TACAAAGCCACTTGAGGAATACTGT  139

seq1  GGCCCTGTGGTTTTACCCTTTTAAAAGCCCCTATAAAATGTGGCTCGCTG  200
      || ||||||| ||||||  ||| |||||||||||||||||||||||||||
seq2  GG-CCTGTGG-TTTACC--TTTTAAAGCCCCTATAAAATGTGGCTCGCTG  185

seq1  GGATTCCCAAGAGTGGACCTGAACAGAATCCTTGTCAGTATTTAATTAAA  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGATTCCCAAGAGTGGA-CTGAACAGAATCCTTGTCAGTATTTAATTAAA  234

seq1  CCTTGGTTCAAATTTGGCTCAAAACCATAAACCTGGTTTCTCTCTGGTGA  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTTCAAATTTGGCTCAAAACCATAAACCTGGTTTCTCTCTGGTGA  284

seq1  ATTTCAGGATTACCAATTCCTGGAAATTATTCATGACACTATTGATCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGATTACCAATTCCTGGAAATTATTCATGACACTATTGATCCTC  334

seq1  TGTACTCTCAAACATGCTGGCCTGTTGAGATGGATATAGATATCTCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCTCAAACATGCTGGCCTGTTGAGATGGATATAGATATCTCAGTA  384

seq1  AGATTTAGTTTTTCATTTAAAATCTAGTCATGCTTTTTCTGCCCCTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAGTTTTTCATTTAAAATCTAGTCATGCTTTTTCTGCCCCTTCTG  434

seq1  TTGTTTTTATTGTCTCTGTGAGAGAAATAATGAACCCATATCCTTTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTATTGTCTCTGTGAGAGAAATAATGAACCCATATCCTTTTATA  484

seq1  TTAGACTGACACTCGCTTTCTGTCATAGTCATTTACATGTTTCTTCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTGACACTCGCTTTCTGTCATAGTCATTTACATGTTTCTTCACTT  534

seq1  CCCAGCTACCTCTATATCCAGGGTTTCTCTCTGTTTCCTTTAAAGGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTACCTCTATATCCAGGGTTTCTCTCTGTTTCCTTTAAAGGAGAG  584

seq1  CAGGGGGAATGGGGGTGAAAGGAGGTCCACGTTCAGGCTGCATTTATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGAATGGGGGTGAAAGGAGGTCCACGTTCAGGCTGCATTTATTAA  634

seq1  GAAGGCCCTCAGCGTTCTTACAGGAAGATAGCAGCAAAGTGGCCCTTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCCTCAGCGTTCTTACAGGAAGATAGCAGCAAAGTGGCCCTTTAG  684

seq1  TAGATAGATATAGGCCTACTAAACCTTACTCTTTAAAAAGTTAATATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATATAGGCCTACTAAACCTTACTCTTTAAAAAGTTAATATTAA  734

seq1  AATCTCTATGAAACCCAATATAAAGTTCTCTTTCTTGGTTATACTACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTATGAAACCCAATATAAAGTTCTCTTTCTTGGTTATACTACAAA  784

seq1  GGGACAGGTGGGGAACTGATATTACTCTTTCCTAGTTTACTTGACTATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGGTGGGGAACTGATATTACTCTTTCCTAGTTTACTTGACTATTG  834

seq1  CTTTTATCTCAAATAGCCAAAGGAGCTGGAGGCTACTTTTGTTTGTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCTCAAATAGCCAAAGGAGCTGGAGGCTACTTTTGTTTGTTTTT  884

seq1  TTGCCCTGGTTTGCTATATGGGCCTGGGTCATGCCTCCAGGCCCCTGCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTGGTTTGCTATATGGGCCTGGGTCATGCCTCCAGGCCCCTGCTC  934

seq1  TGAGTACCGTTCCCCCTTAGTTCATGCTGGCTGGATGTGCTCTCCCACTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACCGTTCCCCCTTAGTTCATGCTGGCTGGATGTGCTCTCCCACTC  984

seq1  ACTGACCTCCACATAGAGCTGTGGCTTAGGGATGAGCTGGCTCACACCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCTCCACATAGAGCTGTGGCTTAGGGATGAGCTGGCTCACACCTG  1034

seq1  AAGAGGGTTTCCACAACAGCAGTTACCTTACAGGGCACAGTGAATTC  1097
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGTTTCCACAACAGCAGTTACCTTACAGGGCACAGTGAATTC  1081