BAC Information

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BAC

Clone NameB6Ng01-044G18
Chromosome16 (Build37)
Map Location 88,783,045 - 88,784,182
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672
Downstream geneEG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044G18.bB6Ng01-044G18.g
ACCDH870181DH870182
length6361,146
definitionDH870181|Mus musculus domesticus DNA, BAC clone: B6Ng01-044G18, 5' end.DH870182|Mus musculus domesticus DNA, BAC clone: B6Ng01-044G18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctctccaataagtgtgacagctcttacacaacaggtgttctca
ggcaatggagtaattctcacacctatattccttctggataggatcttaca
tacagctttggggtggggtggagtgggatcttacagcaaatggttcctat
tggcttggtctgagatgttaagaatatctcatctacatgtggagggactt
gggggcactgcccctaaatgactgctggtcacaattctctttatgggggg
ctgtagctacctgacacggccctggggtcaggagcaggtgaagctcggtc
ttccatttgagtctctgtggcttccaaactagctcaactttaccaggctt
cctctcacagttcacagccaaacgattctcatccagggagacagcgaggc
ccaggccaatgagcagagggataaagacctctctcttctttcaacttcct
cccatctgcaaggcatgttcttcaggtttgtagagataaacctgggaaaa
aattatcgcatgaacggagaagccttgggaagagggttaacacctgtatt
gcctttgcactagaggatagcatgatggttaacacatattgatttgatgc
tgattatatcatgggcacatgttatatggggattta
gaattcagatccataatacatagataggaaagtagagactccataactta
gaggttgtagccacttgatatgctgagtaggtatatctggatccatagcc
cagcaagtaacagctgctcaaatcaaaggtcagagatcagcatggattgg
atgacaggaactgctgagataggagatgctggggtagtagcaggacctct
ggctgctggagcgctcaatgcaggtctcctgacagcaagtgcagagagga
atccaactaacaggtgctcgggaaagcagccggtagtgatgtagatcaag
ttgctgggatagaaagagccttaggttgagtctgaggagggaaggcacta
cctaagagaaggagagaagtttccagagaaagcagttacagaccatgttg
agatttgaattcagttgcatttaattgaaaatactcagaattctaatgca
ccctatggataggacattaatatgctttcatgaataggtatagtaaccca
ccttttcatcttgaccatatatttgtgtgcttcctggtttataaacttga
aactcagcaatctctctgtaattatagtttcacttgaatcattttctgta
tagtatatttatgtgtgttgtaacttacacacggaaaaagctctcagcta
ctcctatgtttttacattaacatttattttcatcatgtttcaggaaagtt
ccttctcttcctctcttgctattgtttagtggtgttttgccataggatgt
tatgagagcaatgttattacttctctactgaagttgaggtgtgtttcctg
aggaatctactaaagactatactctcagtatgatttcccaattacaatat
tctttgtggattacagaacatgttactacacctctagtagcaaaggcaca
aattaagccatggaggttggaacactgctgatttacatagagagagaacg
gcaggtcatggatagagttgtctatgcctcctcattatctcccttccaag
gaagatctagaggaaaattattaagataataaattttgaaatcctgcctc
atgcctcctttgaaaataaaccactgttggtaggagaattgaaatggaga
tcttcctcttgagcatgtcttgtgagtttggctaatagattaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88783045_88784182
seq2: B6Ng01-044G18.g_67_1212

seq1  GAATTCAGATCCATAATACATAGATAGGAAAGTAGAGACTCCATAACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCATAATACATAGATAGGAAAGTAGAGACTCCATAACTTA  50

seq1  GAGGTTGTAGCCACTTGATATGCTGAGTAGGTATATCTGGATCCATAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGTAGCCACTTGATATGCTGAGTAGGTATATCTGGATCCATAGCC  100

seq1  CAGCAAGTAACAGCTGCTCAAATCAAAGGTCAGAGATCAGCATGGATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTAACAGCTGCTCAAATCAAAGGTCAGAGATCAGCATGGATTGG  150

seq1  ATGACAGGAACTGCTGAGATAGGAGATGCTGGGGTAGTAGCAGGACCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGAACTGCTGAGATAGGAGATGCTGGGGTAGTAGCAGGACCTCT  200

seq1  GGCTGCTGGAGCGCTCAATGCAGGTCTCCTGACAGCAAGTGCAGAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGGAGCGCTCAATGCAGGTCTCCTGACAGCAAGTGCAGAGAGGA  250

seq1  ATCCAACTAACAGGTGCTCGGGAAAGCAGCCGGTAGTGATGTAGATCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACTAACAGGTGCTCGGGAAAGCAGCCGGTAGTGATGTAGATCAAG  300

seq1  TTGCTGGGATAGAAAGAGCCTTAGGTTGAGTCTGAGGAGGGAAGGCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGATAGAAAGAGCCTTAGGTTGAGTCTGAGGAGGGAAGGCACTA  350

seq1  CCTAAGAGAAGGAGAGAAGTTTCCAGAGAAAGCAGTTACAGACCATGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGAAGGAGAGAAGTTTCCAGAGAAAGCAGTTACAGACCATGTTG  400

seq1  AGATTTGAATTCAGTTGCATTTAATTGAAAATACTCAGAATTCTAATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGAATTCAGTTGCATTTAATTGAAAATACTCAGAATTCTAATGCA  450

seq1  CCCTATGGATAGGACATTAATATGCTTTCATGAATAGGTATAGTAACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGGATAGGACATTAATATGCTTTCATGAATAGGTATAGTAACCCA  500

seq1  CCTTTTCATCTTGACCATATATTTGTGTGCTTCCTGGTTTATAAACTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCATCTTGACCATATATTTGTGTGCTTCCTGGTTTATAAACTTGA  550

seq1  AACTCAGCAATCTCTCTGTAATTATAGTTTCACTTGAATCATTTTCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGCAATCTCTCTGTAATTATAGTTTCACTTGAATCATTTTCTGTA  600

seq1  TAGTATATTTATGTGTGTTGTAACTTACACACGGAAAAAGCTCTCAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATTTATGTGTGTTGTAACTTACACACGGAAAAAGCTCTCAGCTA  650

seq1  CTCCTATGTTTTTACATTAACATTTA-TTTCATCATG-TTCAGGAAAGTT  698
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  CTCCTATGTTTTTACATTAACATTTATTTTCATCATGTTTCAGGAAAGTT  700

seq1  CCTTCTCTTCCTCTCTTGCTATTG-TTAGTGGTGTTTTGCCATAGGATGT  747
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTTCTCTTCCTCTCTTGCTATTGTTTAGTGGTGTTTTGCCATAGGATGT  750

seq1  TATGAGAGCAATGTTATTACTTCTCTACTGAAGTTGAGGTGTGTTTCCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGCAATGTTATTACTTCTCTACTGAAGTTGAGGTGTGTTTCCTG  800

seq1  AGGAATCTACTAAAGACTATACTCTCAGTATGATTTCCCAATTACAATAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTACTAAAGACTATACTCTCAGTATGATTTCCCAATTACAATAT  850

seq1  TCTTTGTGGATTACAGAACATGTTACTACACCTCTAGTAGCAAAGGCACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGGATTACAGAACATGTTACTACACCTCTAGTAGCAAAGGCACA  900

seq1  AAATAAGCCATGGAAGATGGAACACTGCTGAATCTACATAGAGAGAGAAA  947
      || ||||||||||| | ||||||||||||| || ||||||||||||||| 
seq2  AATTAAGCCATGGAGGTTGGAACACTGCTG-ATTTACATAGAGAGAGAAC  949

seq1  GGCAGGTCATGGATAGAGTTGTCTATGCCTCCTCA-TATCTCCCTT-CAA  995
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  GGCAGGTCATGGATAGAGTTGTCTATGCCTCCTCATTATCTCCCTTCCAA  999

seq1  GGAAGATCTAGAAGAAAATTA-TAAGATAAATAAATTTGAAATCTTG-CT  1043
      |||||||||||| |||||||| ||||||||  || ||||||||| || ||
seq2  GGAAGATCTAGAGGAAAATTATTAAGATAATAAATTTTGAAATCCTGCCT  1049

seq1  CATG-CTCCTTTGAAAATAAAACCACTGTTGGTA-GAGAATTGAAATGGA  1091
      |||| ||||||||||||| ||||||||||||||| |||||||||||||||
seq2  CATGCCTCCTTTGAAAAT-AAACCACTGTTGGTAGGAGAATTGAAATGGA  1098

seq1  GATCTT-CTCTTGAGCATGTCATGTGAGTTTGGCAATAAAATTAATTC  1138
      |||||| |||||||||||||| |||||||||||| |  | ||||||||
seq2  GATCTTCCTCTTGAGCATGTCTTGTGAGTTTGGCTAATAGATTAATTC  1146