BAC Information

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BAC

Clone NameB6Ng01-044K16
Chromosome16 (Build37)
Map Location 34,161,925 - 34,295,566
singlet/doubletdoublet
Overlap geneKalrn
Upstream geneOsbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, LOC100043670
Downstream geneRopn1, Ccdc14, Mylk, Ptplb, Adcy5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044K16.bB6Ng01-044K16.g
ACCDH870354DH870355
length1,0911,081
definitionDH870354|Mus musculus domesticus DNA, BAC clone: B6Ng01-044K16, 5' end.DH870355|Mus musculus domesticus DNA, BAC clone: B6Ng01-044K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,294,463 - 34,295,566)(34,161,925 - 34,163,018)
sequence
gaattccagagccgcatgtgaaactccagtgtgtggtataactgacagta
ctgctagggtccactgagaagcccatcagcctgctgtatgtatagatgtg
cccacaaagctaggttacactgaaggctgtggatttgagtggagagtttg
tggtctgcacacactctcttgtgtaatatgcacacagagacacagatgct
aatactttccaaactgcaggcattaagttatctcagtggctaaaggagta
actcctcagagaccgagacatgtgctgcctccctttcccttggacacatt
catatttgtgaggctggttgtgagatgtaaacggtgcattttaaaacttt
ggttccttgtgtatttcaaggtgtctatgcaccttcccaagcgtccctta
gaataagtgtttatttcttactttaacacctcactcctccctcgacagcc
agagccactgctgctctgagcttcaacactaaggaaaacgtcttcgggct
aagtctctagatttttaagcctgtgagaatacggagcctctactacattc
agcaagataaatactctcagccttaggatgcagagaccttgcctgattaa
attgttggttggttggagagaggtggcaagaaggcacgggggcctattat
cctcctgatcgcatgtgttgcttacccggctcaggtgcaagactgaaggg
aacctccagggtgcgctatatgacacaagagtgtgtgcagaccctgtgac
tggtactactgctgtgaagttttatggtagagtgaggggcaagtggccta
gtcctacctcactgctgtctcctgcctcattccctaccaatatagctgac
tttcctggatggggtggaagccatgaggatatttgcctgtgtagcctctg
ttgcttatttagaaaaacagactggtatgtgggaaaccctgaattcaatc
cccagctccaaagtaataacagcaagtactaataaattaaatatggcatg
acagggctctaaaaaaaaaaaactatgggagctggactgccttgggttta
gtaaggtagaactatcccattgcattgacttggttccggtg
gaattcttgaaccttgtaagcctctgcattaagtccctagaaaggagggg
acagaaatctaaccatcctgtgatgcagaaatggctgctccagcataacc
aggggcaggtttgtacgcagcaggccaggagtgaggagaggctccagctg
aaaacaggggtggacactgtctagggtctggtcatacagtcccgaaacta
cctagaacagtttctctcataaagacagtcctcaacgcggagttggctgc
ccctctcaggggacacctgttgcctgttgctcctgggagatgtccttact
gttgctttccatgggtaaatcctccaaggagggtgttttattagtttctt
tttcttggcaatcctgctttccagcaacagtgatcacatgaccccactcc
aatgccatccacagaaatctacaccaccctgccccacagtgctcatgaga
gacacgctgcagaagccaacagtaacaaatgaattagcactcaactgcca
tcaaggtaaacctaggcgagaagcttctatcggggttcaaagtcaagaat
cagggcaatcccgagccacttgtcagcccagtaggttttcccccagaatg
ctacattatcgcaactggtactatgacctgtgcttcctaccacagtgcat
cagagagaaggagcaccagctaccacaaagccacaggctcaaaccagcca
gtctacgctgtctaacccatgctgctccgaatccctgtgcaaagtctctg
cctgaggtttccaaaacagctaatgatcacctgtccaaagggctctctgt
tagtaccacaatcccacaccactgctcttcaaccaggagctctgaagagc
agacttcccacagtttgctaagctcatccatttaggcaaggctttctctc
tctctctcttttctctctctctttctctctctctctctctctctctctct
ctccgcctcggccgtcagtctcaccccctgtccctctctatagattgctg
gctgcttcccttttaaaagacaatactctacctaccttaaccagagtagg
agaggttaaatcgaacctgactggttctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_34294463_34295566
seq2: B6Ng01-044K16.b_43_1133 (reverse)

seq1  CACCGTGAACACAAGTCATTGGCAATGGGATAGTTCTACCCTTAACTAAA  50
      ||||| |||| ||||||| | |||||||||||||||||||  | ||||||
seq2  CACCG-GAAC-CAAGTCAAT-GCAATGGGATAGTTCTACC--TTACTAAA  45

seq1  CCCAACGCAGTCCAGCTTCCCATTACCTTTTTTTTTTTTTTTAGAGCCCT  100
      ||||| |||||||||| |||||     |  ||||||||||||||||||| 
seq2  CCCAAGGCAGTCCAGC-TCCCA-----TAGTTTTTTTTTTTTAGAGCCC-  88

seq1  TGTCATGCCATTATTTTATTTATTAGTACTTGCTGTTATTACTTTGGAGC  150
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  TGTCATGCCA-TATTTAATTTATTAGTACTTGCTGTTATTACTTTGGAGC  137

seq1  TGGGGATTGAATTCAGGGTTTCCCACATACCAGTCTGTTTTTCTAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATTGAATTCAGGGTTTCCCACATACCAGTCTGTTTTTCTAAATAA  187

seq1  GCAACCGAGGCTACACAGGCAAATATCCTCATGGCTTCCACCCCATCCAG  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGAGGCTACACAGGCAAATATCCTCATGGCTTCCACCCCATCCAG  237

seq1  GAAAGTCAGCTATATTGGTAGGAAATGAGGCAGGAGACAGCAGTGAGGTA  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAAGTCAGCTATATTGGTAGGGAATGAGGCAGGAGACAGCAGTGAGGTA  287

seq1  GGACTAGGCCACTTGCCCCTCACTCTACCATAAAACTTCACAGCAGTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGGCCACTTGCCCCTCACTCTACCATAAAACTTCACAGCAGTAGT  337

seq1  ACCAGTCACAGGGTCTGCACACACTCTTGTGTCATATAGCGCACCCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCACAGGGTCTGCACACACTCTTGTGTCATATAGCGCACCCTGGA  387

seq1  GGTTCCCTTCAGTCTTGCACCTGAGCCGGGTAAGCAACACATGCGATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCTTCAGTCTTGCACCTGAGCCGGGTAAGCAACACATGCGATCAG  437

seq1  GAGGATAATAGGCCCCCGTGCCTTCTTGCCACCTCTCTCCAACCAACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATAATAGGCCCCCGTGCCTTCTTGCCACCTCTCTCCAACCAACCAA  487

seq1  CAATTTAATCAGGCAAGGTCTCTGCATCCTAAGGCTGAGAGTATTTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAATCAGGCAAGGTCTCTGCATCCTAAGGCTGAGAGTATTTATCT  537

seq1  TGCTGAATGTAGTAGAGGCTCCGTATTCTCACAGGCTTAAAAATCTAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATGTAGTAGAGGCTCCGTATTCTCACAGGCTTAAAAATCTAGAG  587

seq1  ACTTAGCCCGAAGACGTTTTCCTTAGTGTTGAAGCTCAGAGCAGCAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCCCGAAGACGTTTTCCTTAGTGTTGAAGCTCAGAGCAGCAGTGG  637

seq1  CTCTGGCTGTCGAGGGAGGAGTGAGGTGTTAAAGTAAGAAATAAACACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTGTCGAGGGAGGAGTGAGGTGTTAAAGTAAGAAATAAACACTT  687

seq1  ATTCTAAGGGACGCTTGGGAAGGTGCATAGACACCTTGAAATACACAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAGGGACGCTTGGGAAGGTGCATAGACACCTTGAAATACACAAGG  737

seq1  AACCAAAGTTTTAAAATGCACCGTTTACATCTCACAACCAGCCTCACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGTTTTAAAATGCACCGTTTACATCTCACAACCAGCCTCACAAA  787

seq1  TATGAATGTGTCCAAGGGAAAGGGAGGCAGCACATGTCTCGGTCTCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGTGTCCAAGGGAAAGGGAGGCAGCACATGTCTCGGTCTCTGAG  837

seq1  GAGTTACTCCTTTAGCCACTGAGATAACTTAATGCCTGCAGTTTGGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTCCTTTAGCCACTGAGATAACTTAATGCCTGCAGTTTGGAAAG  887

seq1  TATTAGCATCTGTGTCTCTGTGTGCATATTACACAAGAGAGTGTGTGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCATCTGTGTCTCTGTGTGCATATTACACAAGAGAGTGTGTGCAG  937

seq1  ACCACAAACTCTCCACTCAAATCCACAGCCTTCAGTGTAACCTAGCTTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAACTCTCCACTCAAATCCACAGCCTTCAGTGTAACCTAGCTTTG  987

seq1  TGGGCACATCTATACATACAGCAGGCTGATGGGCTTCTCAGTGGACCCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACATCTATACATACAGCAGGCTGATGGGCTTCTCAGTGGACCCTA  1037

seq1  GCAGTACTGTCAGTTATACCACACACTGGAGTTTCACATGCGGCTCTGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACTGTCAGTTATACCACACACTGGAGTTTCACATGCGGCTCTGGA  1087

seq1  ATTC  1104
      ||||
seq2  ATTC  1091

seq1: chr16_34161925_34163018
seq2: B6Ng01-044K16.g_68_1148

seq1  GAATTCTTGAACCTTGTAAGCCTCTGCATTAAGTCCCTAGAAAGGAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAACCTTGTAAGCCTCTGCATTAAGTCCCTAGAAAGGAGGGG  50

seq1  ACAGAAATCTAACCATCCTGTGATGCAGAAATGGCTGCTCCAGCATAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATCTAACCATCCTGTGATGCAGAAATGGCTGCTCCAGCATAACC  100

seq1  AGGGGCAGGTTTGTACGCAGCAGGCCAGGAGTGAGGAGAGGCTCCAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGGTTTGTACGCAGCAGGCCAGGAGTGAGGAGAGGCTCCAGCTG  150

seq1  AAAACAGGGGTGGACACTGTCTAGGGTCTGGTCATACAGTCCCGAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGGGTGGACACTGTCTAGGGTCTGGTCATACAGTCCCGAAACTA  200

seq1  CCTAGAACAGTTTCTCTCATAAAGACAGTCCTCAACGCGGAGTTGGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAACAGTTTCTCTCATAAAGACAGTCCTCAACGCGGAGTTGGCTGC  250

seq1  CCCTCTCAGGGGACACCTGTTGCCTGTTGCTCCTGGGAGATGTCCTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCAGGGGACACCTGTTGCCTGTTGCTCCTGGGAGATGTCCTTACT  300

seq1  GTTGCTTTCCATGGGTAAATCCTCCAAGGAGGGTGTTTTATTAGTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTCCATGGGTAAATCCTCCAAGGAGGGTGTTTTATTAGTTTCTT  350

seq1  TTTCTTGGCAATCCTGCTTTCCAGCAACAGTGATCACATGACCCCACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGCAATCCTGCTTTCCAGCAACAGTGATCACATGACCCCACTCC  400

seq1  AATGCCATCCACAGAAATCTACACCACCCTGCCCCACAGTGCTCATGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATCCACAGAAATCTACACCACCCTGCCCCACAGTGCTCATGAGA  450

seq1  GACACGCTGCAGAAGCCAACAGTAACAAATGAATTAGCACTCAACTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGCTGCAGAAGCCAACAGTAACAAATGAATTAGCACTCAACTGCCA  500

seq1  TCAAGGTAAACCTAGGCGAGAAGCTTCTATCGGGGTTCAAAGTCAAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTAAACCTAGGCGAGAAGCTTCTATCGGGGTTCAAAGTCAAGAAT  550

seq1  CAGGGCAATCCCGAGCCACTTGTCAGCCCAGTAGGTTTTCCCCCAGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAATCCCGAGCCACTTGTCAGCCCAGTAGGTTTTCCCCCAGAATG  600

seq1  CTACATTATCGCAACTGGTACTATGACCTGTGCTTCCTACCACAGTGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTATCGCAACTGGTACTATGACCTGTGCTTCCTACCACAGTGCAT  650

seq1  CAGAGAGAAGGAGCACCAGCTACCACAAAGCCACAGGCTCAAACCAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAAGGAGCACCAGCTACCACAAAGCCACAGGCTCAAACCAGCCA  700

seq1  GTCTACGCTGTCTAACCCATGCTGCTCCGAATCCCTGTGCAAAGTCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACGCTGTCTAACCCATGCTGCTCCGAATCCCTGTGCAAAGTCTCTG  750

seq1  CCTGAGGTTTCCAAAACAGCTAATGATCACCTGTCCAAAGGGCTCTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGTTTCCAAAACAGCTAATGATCACCTGTCCAAAGGGCTCTCTGT  800

seq1  TAGTACCACAATCCCACACCACTGCTCTTCAACCAGGAGCTCTGAAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCACAATCCCACACCACTGCTCTTCAACCAGGAGCTCTGAAGAGC  850

seq1  AGACTTCCCACAGTTTGCTAAGCTCATCCA-TTAGGCAAAGTCTTTCTCT  899
      |||||||||||||||||||||||||||||| |||||| ||| ||||||||
seq2  AGACTTCCCACAGTTTGCTAAGCTCATCCATTTAGGC-AAGGCTTTCTCT  899

seq1  CTCTCTCTCTTTTTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCT  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTC-TTTTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCT  948

seq1  CTCTCTCTCTCTCTGTCTGTCTGTCTCTCTCCCTGTCTCTCTCTCTCTGC  999
      |||||   |||   | | ||| ||||| | ||||||| |||||| |  | 
seq2  CTCTCCGCCTC---GGCCGTCAGTCTCACCCCCTGTCCCTCTCTAT-AGA  994

seq1  TTGCTTGCTTGCTTCCCTTTTTAAATGTACAATACTTTTTACCTACCTAA  1049
      ||||| || |||||||||||| |||   |||||||  | ||||||||| |
seq2  TTGCTGGC-TGCTTCCCTTTTAAAA--GACAATAC--TCTACCTACCTTA  1039

seq1  GACCAGAGGAGGAGAGGCTAAACAGAACACTGACTGGTCTCTGTG  1094
       ||||||| |||||||| ||||  |||| ||||||||| ||||||
seq2  -ACCAGAGTAGGAGAGGTTAAATCGAAC-CTGACTGGT-TCTGTG  1081