BAC Information

Click to search

BAC

Clone NameB6Ng01-044L13
Chromosome16 (Build37)
Map Location 69,536,808 - 69,637,985
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneSpeer2, EG664930, Gbe1, D16Ertd519e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044L13.bB6Ng01-044L13.g
ACCDH870394DH870395
length1,1901,123
definitionDH870394|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L13, 5' end.DH870395|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,536,808 - 69,538,011)(69,636,837 - 69,637,985)
sequence
gaattccagtgcttctcaagttttcactcagcgatgcagcatctctcagg
gctccctctaagtcttgggttaattttctctgtgaccttcaccttggcca
acttacttgatttttcttgtttcacagtgtttcttttcaataaattaaaa
agaaaagaataaatggaaaagggattactaagccttatcactctctaaca
ttatggagggcattaagacgtacagttagagtgcttcatgccttataaag
aaagtcttcttgtaaagatttatatgattttttttttattagtagaattt
tctcaatgttgttgtgtgaattttttttaactctcgtgaggttagatctc
ggtgattggcagttagcttggtacataggtgatttttggatgcattatac
ttctatttgtaagttaatataagttaatgtgaccttcatccttttagaga
taaaaagagaaagccttaacattaactcattgtgtcacctacttattctt
tgctctagctaggaaaatatttcttctattttagtgcttttaagtgtgtg
gaaaataaaggacattaagcagtacataataaatgcatttctgattaaac
tttaatgctagcaaattctatttaatactgtatgcttcaaaaaggagtct
tttggtaaagattaagttaaatatataagattaatatgcttctgcatgta
ctagctttagaaatgtgtcctcactatcagggccttttagtaaaaccttt
atcatattggggaataattaacaataaccttcagaacttacctacttaaa
agaccatcaaaaatggaacagtgatgtctttggcaaataacatataagta
aaagatatatatttatttttgttatgctcagtatattctgttttctaata
tttactgactagataaagggaagatttagttatcttttatgtaatatata
tataaatagttacatatatatacattacactattagaaatatgccttata
ttaaggatgcgtgagcatagctgctaccatgtgcagattttaggttttta
ccggatacaaaaagaaaaaaatattgagaagaactattcttaactacatt
tcacaagtaatatacgaatagagtttaaaaatagctccttcaattcgttg
aagaaatagaattgaatttgatgggattgcaatgaatctg
gaattcctatgctgactgttgtagctttgactaatctctaatgtcctcag
agaaggtagtcttgattatatgcatatgatcctgggaatgttgtagcaaa
cttacaccaagtagaattttaagtaagataattctattgtgttatgtttc
taaggtctgtttgatttcttctaaaaaataattgtgaggatgaatatttc
tgcacatgtctctaacttctcactacttactaaaatatatggtggttttt
tttcatttgtcgaaatataatccatttccttcatgtatctctgttccttt
gttcaatttatttttttctagaaagacatagtcaatctattgattgccga
cctatccatttaatcagactttgtaaattgctcctgtttgtgaataaagt
acatcgtgagaattagagctattactttaacattagcagaacataaaatg
taatcaatagcatattcctgaaaggatgcataatttctgtaatggagata
aattcagggcactgggctattaaagatgggcaataccaatggttagtatg
tgtaggattcataatacttttcgaaacataaggaaagtgttgacacggct
acagtttggtaatggggaagcagataaactcacacatgaggcccatgtaa
caactctgtgacagtatagggcatcaagtctgaattttcttatatctgaa
taagaactggccataattatagcattgaaattctctaggaggctaatgca
agagaatatttcctaactcatttatttggaggaaggggcatactttctaa
ttttaaaatttgttgttctatttttactgcttctctctgtggttacagtg
atacatgaaaacacccttatatttagaagagcagtatacccttattcttt
cattataaaatgaaaagtaaattattctgtttcacttgatgatgatacac
aggtacatagagtatggtgaatatctggtttctgcatatacagaatatgt
gctactagtcacacctctttttttgaacatccactaaaataaatgattct
ttttttcagtaatgaggtatcatttttatttgggattattatggctttta
aagcattatcattaaattctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_69536808_69538011
seq2: B6Ng01-044L13.b_44_1233

seq1  GAATTCCAGTGCTTCTCAAGTTTTCACTCAGCGATGCAGCATCTCTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCTTCTCAAGTTTTCACTCAGCGATGCAGCATCTCTCAGG  50

seq1  GCTCCCTCTAAGTCTTGGGTTAATTTTCTCTGTGACCTTCACCTTGGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTCTAAGTCTTGGGTTAATTTTCTCTGTGACCTTCACCTTGGCCA  100

seq1  ACTTACTTGATTTTTCTTGTTTCACAGTGTTTCTTTTCAATAAATTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTGATTTTTCTTGTTTCACAGTGTTTCTTTTCAATAAATTAAAA  150

seq1  AGAAAAGAATAAATGGAAAAGGGATTACTAAGCCTTATCACTCTCTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAATAAATGGAAAAGGGATTACTAAGCCTTATCACTCTCTAACA  200

seq1  TTATGGAGGGCATTAAGACGTACAGTTAGAGTGCTTCATGCCTTATAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAGGGCATTAAGACGTACAGTTAGAGTGCTTCATGCCTTATAAAG  250

seq1  AAAGTCTTCTTGTAAAGATTTATATGATTTTTTTTTTATTAGTAGAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTCTTGTAAAGATTTATATGATTTTTTTTTTATTAGTAGAATTT  300

seq1  TCTCAATGTTGTTGTGTGAATTTTTTTTAACTCTCGTGAGGTTAGATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGTTGTTGTGTGAATTTTTTTTAACTCTCGTGAGGTTAGATCTC  350

seq1  GGTGATTGGCAGTTAGCTTGGTACATAGGTGATTTTTGGATGCATTATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTGGCAGTTAGCTTGGTACATAGGTGATTTTTGGATGCATTATAC  400

seq1  TTCTATTTGTAAGTTAATATAAGTTAATGTGACCTTCATCCTTTTAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTGTAAGTTAATATAAGTTAATGTGACCTTCATCCTTTTAGAGA  450

seq1  TAAAAAGAGAAAGCCTTAACATTAACTCATTGTGTCACCTACTTATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAGAAAGCCTTAACATTAACTCATTGTGTCACCTACTTATTCTT  500

seq1  TGCTCTAGCTAGGAAAATATTTCTTCTATTTTAGTGCTTTTAAGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAGCTAGGAAAATATTTCTTCTATTTTAGTGCTTTTAAGTGTGTG  550

seq1  GAAAATAAAGGACATTAAGCAGTACATAATAAATGCATTTCTGATTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAGGACATTAAGCAGTACATAATAAATGCATTTCTGATTAAAC  600

seq1  TTTAATGCTAGCAAATTCTATTTAATACTGTATGCTTCAAAAAGGAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCTAGCAAATTCTATTTAATACTGTATGCTTCAAAAAGGAGTCT  650

seq1  TTTGGTAAAGATTAAGTTAAATATATAAGATTAATATGCTTCTGCATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAAAGATTAAGTTAAATATATAAGATTAATATGCTTCTGCATGTA  700

seq1  CTAGCTTTAGAAATGTGTCCTCACTATCAGGGCCTTTTAGTAAAACCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTAGAAATGTGTCCTCACTATCAGGGCCTTTTAGTAAAACCTTT  750

seq1  ATCATATTGGGGAATAATTAACAATAACCTTCAGAACTTACCTACTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTGGGGAATAATTAACAATAACCTTCAGAACTTACCTACTTAAA  800

seq1  AGACCATCAAAAATGGAACAGTGATGTCTTTGGCAAATAACATATAAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGACCATCAAAAATGGAACAGTGATGTCTTTGGCAAATAACATATAA-GT  849

seq1  AAAAGATATATATTTATTTTTGTTATGCTCAGTATATTCTGTTTTCTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATATATATTTATTTTTGTTATGCTCAGTATATTCTGTTTTCTAAT  899

seq1  ATTTACTGACTAGATAAAGGGAAGATTTAGTTATCTTTTATGTAATATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGACTAGATAAAGGGAAGATTTAGTTATCTTTTATGTAATATAT  949

seq1  ATATAAATAGTTACATATATATACATTACACTATTAGAAATATGCCTTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATAGTTACATATATATACATTACACTATTAGAAATATGCCTTAT  999

seq1  ATTAAGGGATGCGTGAGCATAGCTGCCTACCATGTGCAGGATTCTAGGTT  1050
      ||||| ||||||||||||||||||| |||||||||||| |||| ||||||
seq2  ATTAA-GGATGCGTGAGCATAGCTG-CTACCATGTGCA-GATTTTAGGTT  1046

seq1  CTATACACAGAATACAAAAAAGAAAAAAAATAATGAGAAGAACTATGCTT  1100
         |  || | |||||||||   ||||||||| ||||||||||||| |||
seq2  ---TTTACCGGATACAAAAA--GAAAAAAATATTGAGAAGAACTATTCTT  1091

seq1  TACACTAACATTCACAAGTAATA-ACCAATAGAAGTTTAAAAATAGCTCC  1149
         ||||   ||||||||||||| || ||||| |||||||||||||||||
seq2  --AACTACATTTCACAAGTAATATACGAATAG-AGTTTAAAAATAGCTCC  1138

seq1  TTCCAATTCGTTGAAG-AATTGAGTTGGAATTTTGATGGGGATTGCATTG  1198
      || ||||||||||||| ||| || |||  | |||||| ||||||||| ||
seq2  TT-CAATTCGTTGAAGAAATAGAATTG--AATTTGAT-GGGATTGCAATG  1184

seq1  AATCTG  1204
      ||||||
seq2  AATCTG  1190

seq1: chr16_69636837_69637985
seq2: B6Ng01-044L13.g_68_1190 (reverse)

seq1  AAAAGAACATTTTTAAAATGATTAAAATGCTTTTAAAAAGCAATAATAAA  50
      |||||||    |||  ||||||   ||||||||  |||||| ||||| ||
seq2  AAAAGAA----TTT--AATGAT---AATGCTTT--AAAAGCCATAAT-AA  38

seq1  TCTCAAAATAAAAAATGATTACTTCATTTACTGAAATAAAAGAATCATTT  100
      || ||||   |||||||| ||| ||| ||||||||| |||||||||| ||
seq2  TCCCAAA--TAAAAATGA-TACCTCA-TTACTGAAA-AAAAGAATCA-TT  82

seq1  TATTTTTTAAGTGAATGTTC-AGAAAAGA-GTGTGAACTTAGTAGCACAT  148
      ||||||   |||| |||||| | |||||| ||||||   |||||||||||
seq2  TATTTT---AGTGGATGTTCAAAAAAAGAGGTGTGA--CTAGTAGCACAT  127

seq1  ATTTCTGTATAATGCAGAAACCAAGATATTCACCATACTCTTATGTACCT  198
      | |||||||| ||||||||||| ||||||||||||||||| |||||||||
seq2  A-TTCTGTAT-ATGCAGAAACC-AGATATTCACCATACTC-TATGTACCT  173

seq1  GTTGTATCATCATCAAGTGAAACAGAATAATTTACTTTTCATTTTATAAT  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TGTATCATCATCAAGTGAAACAGAATAATTTACTTTTCATTTTATAAT  222

seq1  GAAAGAATAAGGGTATACTGCTCTTCTAAATATAAGGGTGTTTTCATGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATAAGGGTATACTGCTCTTCTAAATATAAGGGTGTTTTCATGTA  272

seq1  TCACTGTAACCACAGAGAGAAGCAGTAAAAATAGAACAACAAATTTTAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTAACCACAGAGAGAAGCAGTAAAAATAGAACAACAAATTTTAAA  322

seq1  ATTAGAAAGTATGCCCCTTCCTCCAAATAAATGAGTTAGGAAATATTCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAAGTATGCCCCTTCCTCCAAATAAATGAGTTAGGAAATATTCTC  372

seq1  TTGCATTAGCCTCCTAGAGAATTTCAATGCTATAATTATGGCCAGTTCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTAGCCTCCTAGAGAATTTCAATGCTATAATTATGGCCAGTTCTT  422

seq1  ATTCAGATATAAGAAAATTCAGACTTGATGCCCTATACTGTCACAGAGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATATAAGAAAATTCAGACTTGATGCCCTATACTGTCACAGAGTT  472

seq1  GTTACATGGGCCTCATGTGTGAGTTTATCTGCTTCCCCATTACCAAACTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATGGGCCTCATGTGTGAGTTTATCTGCTTCCCCATTACCAAACTG  522

seq1  TAGCCGTGTCAACACTTTCCTTATGTTTCGAAAAGTATTATGAATCCTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCGTGTCAACACTTTCCTTATGTTTCGAAAAGTATTATGAATCCTAC  572

seq1  ACATACTAACCATTGGTATTGCCCATCTTTAATAGCCCAGTGCCCTGAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTAACCATTGGTATTGCCCATCTTTAATAGCCCAGTGCCCTGAAT  622

seq1  TTATCTCCATTACAGAAATTATGCATCCTTTCAGGAATATGCTATTGATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCCATTACAGAAATTATGCATCCTTTCAGGAATATGCTATTGATT  672

seq1  ACATTTTATGTTCTGCTAATGTTAAAGTAATAGCTCTAATTCTCACGATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTATGTTCTGCTAATGTTAAAGTAATAGCTCTAATTCTCACGATG  722

seq1  TACTTTATTCACAAACAGGAGCAATTTACAAAGTCTGATTAAATGGATAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATTCACAAACAGGAGCAATTTACAAAGTCTGATTAAATGGATAG  772

seq1  GTCGGCAATCAATAGATTGACTATGTCTTTCTAGAAAAAAATAAATTGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGCAATCAATAGATTGACTATGTCTTTCTAGAAAAAAATAAATTGAA  822

seq1  CAAAGGAACAGAGATACATGAAGGAAATGGATTATATTTCGACAAATGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAACAGAGATACATGAAGGAAATGGATTATATTTCGACAAATGAA  872

seq1  AAAAAACCACCATATATTTTAGTAAGTAGTGAGAAGTTAGAGACATGTGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCACCATATATTTTAGTAAGTAGTGAGAAGTTAGAGACATGTGC  922

seq1  AGAAATATTCATCCTCACAATTATTTTTTAGAAGAAATCAAACAGACCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTCATCCTCACAATTATTTTTTAGAAGAAATCAAACAGACCTT  972

seq1  AGAAACATAACACAATAGAATTATCTTACTTAAAATTCTACTTGGTGTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATAACACAATAGAATTATCTTACTTAAAATTCTACTTGGTGTAA  1022

seq1  GTTTGCTACAACATTCCCAGGATCATATGCATATAATCAAGACTACCTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTACAACATTCCCAGGATCATATGCATATAATCAAGACTACCTTC  1072

seq1  TCTGAGGACATTAGAGATTAGTCAAAGCTACAACAGTCAGCATAGGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGACATTAGAGATTAGTCAAAGCTACAACAGTCAGCATAGGAATT  1122

seq1  C  1149
      |
seq2  C  1123