BAC Information

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BAC

Clone NameB6Ng01-045M03
Chromosome16 (Build37)
Map Location 20,096,527 - 20,230,664
singlet/doubletdoublet
Overlap geneLOC100042938, Klhl24, Yeats2, LOC100043459
Upstream geneIgl, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6
Downstream geneMap6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045M03.bB6Ng01-045M03.g
ACCDH871123DH871124
length47996
definitionDH871123|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M03, 5' end.DH871124|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,230,180 - 20,230,664)(20,096,527 - 20,096,622)
sequence
ttctccatctagagtcctatccaggactcaatcttactttctggacacag
taagtttgccggccaaatgattagctgacagaaaagaaagaggatataga
cagaggagaatggtgtgcgtctaagtctaagcagattgaagtttgtctca
aagcaccataatgatacagacccatttcttatctcaggggatgggagagt
cctggctagccaagcgtggcgatacacgctctcatccgaaccacccagtt
tgctacatctccagtcaggaacacagaaagcatggctcctcctgcttttc
aagcagggtgagacctggacatttttattcaagcattttcaactattact
actgctaatgctgccactactgcctcctcttcctcctcatttactcacga
cctctatgttatctgtgcttgtctgacctaatatcctcattgggcgtcct
atgcattacagtgtcgggggggggggggg
tagatagttttccttcaagttatgtatcttgtttaaatcaatttgtggag
aagagaggggaagagaaggaaggaggaggaaaagaggggaggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_20230180_20230664
seq2: B6Ng01-045M03.b_46_530 (reverse)

seq1  CCCCCCCCCCCCCCGACACTGTAATGCATAGGACGCCCAATGAGGATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCGACACTGTAATGCATAGGACGCCCAATGAGGATATT  50

seq1  AGGTCAGACAAGCACAGATAACATAGAGGTCGTGAGTAAATGAGGAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGACAAGCACAGATAACATAGAGGTCGTGAGTAAATGAGGAGGAA  100

seq1  GAGGAGGCAGTAGTGGCAGCATTAGCAGTAGTAATAGTTGAAAATGCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGCAGTAGTGGCAGCATTAGCAGTAGTAATAGTTGAAAATGCTTG  150

seq1  AATAAAAATGTCCAGGTCTCACCCTGCTTGAAAAGCAGGAGGAGCCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATGTCCAGGTCTCACCCTGCTTGAAAAGCAGGAGGAGCCATGC  200

seq1  TTTCTGTGTTCCTGACTGGAGATGTAGCAAACTGGGTGGTTCGGATGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTTCCTGACTGGAGATGTAGCAAACTGGGTGGTTCGGATGAGA  250

seq1  GCGTGTATCGCCACGCTTGGCTAGCCAGGACTCTCCCATCCCCTGAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTATCGCCACGCTTGGCTAGCCAGGACTCTCCCATCCCCTGAGATA  300

seq1  AGAAATGGGTCTGTATCATTATGGTGCTTTGAGACAAACTTCAATCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGGTCTGTATCATTATGGTGCTTTGAGACAAACTTCAATCTGCT  350

seq1  TAGACTTAGACGCACACCATTCTCCTCTGTCTATATCCTCTTTCTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTAGACGCACACCATTCTCCTCTGTCTATATCCTCTTTCTTTTCT  400

seq1  GTCAGCTAATCATTTGGCCGGCAAACTTACTGTGTCCAGAAAGTAAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTAATCATTTGGCCGGCAAACTTACTGTGTCCAGAAAGTAAGATT  450

seq1  GAGTCCTGGATAGGACTCTAGATGGAGAAGAATTC  485
      |||||||||||||||||||||||||||||||||||
seq2  GAGTCCTGGATAGGACTCTAGATGGAGAAGAATTC  485

seq1: chr16_20096527_20096622
seq2: B6Ng01-045M03.g_74_169

seq1  TAGATAGTTTTCCTTCAAGTTATGTATCTTGTTTAAATCAATTTGTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGTTTTCCTTCAAGTTATGTATCTTGTTTAAATCAATTTGTGGAG  50

seq1  AAGAGAGGGGAAGAGAAGGAAGGAGGAGGAAAAGAGGGGAGGAGGG  96
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGGGAAGAGAAGGAAGGAGGAGGAAAAGAGGGGAGGAGGG  96