BAC Information

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BAC

Clone NameB6Ng01-046F20
Chromosome16 (Build37)
Map Location 5,112,234 - 5,263,382
singlet/doubletdoublet
Overlap genePpl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
Upstream geneCrebbp, EG436332, Adcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1
Downstream geneLOC100042436, A2bp1, LOC100042445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046F20.bB6Ng01-046F20.g
ACCDH871550DH871551
length4051,103
definitionDH871550|Mus musculus domesticus DNA, BAC clone: B6Ng01-046F20, 5' end.DH871551|Mus musculus domesticus DNA, BAC clone: B6Ng01-046F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,262,972 - 5,263,382)(5,112,234 - 5,113,355)
sequence
cacagattccacagatggacccaatttgtccaggaatgctaagaaatgga
tttacagaagaaaacccaaagcggcaggcctatgtaagcggaaaagcatt
caggtttccagaggtctctgtctgtccaaaatgtcaacacatacttcaaa
tatttgtctttacacatgtgtgtatgtgtgtggaggtgcccatggggatc
agaagaggatgtcagatccctgaagctggggtgagctgcccagcgtagat
gctgggaaccaaactcaggttctctgcaagagtggcaaatgctcctaacc
actaagccttctctcctgcctcgagaccccgtattttgttatagcacaca
caccctttttttgggtgggggggagttggttttttgagacatgggttccc
tgtgt
gaattccagacaaagaacaagcacactagagtataagtgtggcaggaaca
gtaccagggcctgccgacactcaggacactgctctgagatccaaatgtag
cctggcttccctgcttcctttctttgcccagtttagcagttcaatttaca
gccactcctggggccagctagtccctgactagtccccagctcttttagca
cctcacccagaaggccagaagagcgctaaccttgcatgcccggtgctgat
gccctgggtttcacccccagcactgggattccggcaggtcaggagagaga
gaatgggaagtgatatatgtcctccagcaaaggaggcattgtccagggac
tggaggtgtgctgggtgaatgcccctggtgtcccagtagaacttgctagg
cttcctggaacctgcaacatcctgactatgtgagtgcttctatcctctga
gaaggaatcataccggacagagataactgagggagttcaagtgcccaggt
tagactcctaagagttctccacagtggaagctctgcccaggggagctcca
cccaggaggagctttttgtcttccttgaggacagtgtaagccaaggagcc
caccactgccactgttactgttactaggttaccaatttagcaccatcgtt
cttctcccagtgcagaactcagcatccctgcagcactgggctgggtgggt
tcttttcctcagccatagctaggctgaggactgaagccaagagctatgct
tgtagcaaccacaaagactctggatgtgggtgagcctgggaccatattcc
tgggtgaagaccaagctggaagaaggccccaggagggaagctggcactca
cgctctgcatctggcctcggtgtccacaatgttcctttccacctggtctg
cattcttctgcagctgctcaatcagatctgagagttcttgtgagatgctg
tggatgaaggaacaaaaagggaggctcatgcaagcagcctcagcctccaa
gctggaacctcctaggcctcagaaagactgcaacccagccagaacttcag
agctagcctgttcagcagatgaagccactaacaaccaatagcgcacaggc
agg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_5262972_5263382
seq2: B6Ng01-046F20.b_45_455 (reverse)

seq1  ACACAGAGAACCCATGTCTCAAAAAACCAACTCCCCCCCACCCAAAAAAA  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGAACCCATGTCTCAAAAAACCAACTCCCCCCCACCCAAAAAAA  50

seq1  GGGTGTGTGTGCTATAACAAAATACGGGGTCTCGAGGCAGGAGAGAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGTGTGCTATAACAAAATACGGGGTCTCGAGGCAGGAGAGAAGGC  100

seq1  TTAGTGGTTAGGAGCATTTGCCACTCTTGCAGAGAACCTGAGTTTGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGTTAGGAGCATTTGCCACTCTTGCAGAGAACCTGAGTTTGGTTC  150

seq1  CCAGCATCTACGCTGGGCAGCTCACCCCAGCTTCAGGGATCTGACATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCTACGCTGGGCAGCTCACCCCAGCTTCAGGGATCTGACATCCT  200

seq1  CTTCTGATCCCCATGGGCACCTCCACACACATACACACATGTGTAAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGATCCCCATGGGCACCTCCACACACATACACACATGTGTAAAGAC  250

seq1  AAATATTTGAAGTATGTGTTGACATTTTGGACAGACAGAGACCTCTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGAAGTATGTGTTGACATTTTGGACAGACAGAGACCTCTGGAA  300

seq1  ACCTGAATGCTTTTCCGCTTACATAGGCCTGCCGCTTTGGGTTTTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAATGCTTTTCCGCTTACATAGGCCTGCCGCTTTGGGTTTTCTTCT  350

seq1  GTAAATCCATTTCTTAGCATTCCTGGACAAATTGGGTCCATCTGTGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCCATTTCTTAGCATTCCTGGACAAATTGGGTCCATCTGTGGAAT  400

seq1  CTGTGGAATTC  411
      |||||||||||
seq2  CTGTGGAATTC  411

seq1: chr16_5112234_5113355
seq2: B6Ng01-046F20.g_66_1168

seq1  GAATTCCAGACAAAGAACAAGCACACTAGAGTATAAGTGTGGCAGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACAAAGAACAAGCACACTAGAGTATAAGTGTGGCAGGAACA  50

seq1  GTACCAGGGCCTGCCGACACTCAGGACACTGCTCTGAGATCCAAATGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGGGCCTGCCGACACTCAGGACACTGCTCTGAGATCCAAATGTAG  100

seq1  CCTGGCTTCCCTGCTTCCTTTCTTTGCCCAGTTTAGCAGTTCAATTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTCCCTGCTTCCTTTCTTTGCCCAGTTTAGCAGTTCAATTTACA  150

seq1  GCCACTCCTGGGGCCAGCTAGTCCCTGACTAGTCCCCAGCTCTTTTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCCTGGGGCCAGCTAGTCCCTGACTAGTCCCCAGCTCTTTTAGCA  200

seq1  CCTCACCCAGAAGGCCAGAAGAGCGCTAACCTTGCATGCCCGGTGCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCCAGAAGGCCAGAAGAGCGCTAACCTTGCATGCCCGGTGCTGAT  250

seq1  GCCCTGGGTTTCACCCCCAGCACTGGGATTCCGGCAGGTCAGGAGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGGTTTCACCCCCAGCACTGGGATTCCGGCAGGTCAGGAGAGAGA  300

seq1  GAATGGGAAGTGATATATGTCCTCCAGCAAAGGAGGCATTGTCCAGGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGAAGTGATATATGTCCTCCAGCAAAGGAGGCATTGTCCAGGGAC  350

seq1  TGGAGGTGTGCTGGGTGAATGCCCCTGGTGTCCCAGTAGAACTTGCTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGTGCTGGGTGAATGCCCCTGGTGTCCCAGTAGAACTTGCTAGG  400

seq1  CTTCCTGGAACCTGCAACATCCTGACTATGTGAGTGCTTCTATCCTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGAACCTGCAACATCCTGACTATGTGAGTGCTTCTATCCTCTGA  450

seq1  GAAGGAATCATACCGGACAGAGATAACTGAGGGAGTTCAAGTGCCCAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATCATACCGGACAGAGATAACTGAGGGAGTTCAAGTGCCCAGGT  500

seq1  TAGACTCCTAAGAGTTCTCCACAGTGGAAGCTCTGCCCAGGGGAGCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCCTAAGAGTTCTCCACAGTGGAAGCTCTGCCCAGGGGAGCTCCA  550

seq1  CCCAGGAGGAGCTTTTTGTCTTCCTTGAGGACAGTGTAAGCCAAGGAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGGAGCTTTTTGTCTTCCTTGAGGACAGTGTAAGCCAAGGAGCC  600

seq1  CACCACTGCCACTGTTACTGTTACTAGGTTACCAATTTAGCACCATCGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGCCACTGTTACTGTTACTAGGTTACCAATTTAGCACCATCGTT  650

seq1  CTTCTCCCAGTGCAGAACTCAGCATCCCTGCAGCACTGGGCTGGGTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCAGTGCAGAACTCAGCATCCCTGCAGCACTGGGCTGGGTGGGT  700

seq1  TCTTTTCCTCAGCCATAGCTAGGCTGAGGACTGAAGCCAAGAGCTATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTCAGCCATAGCTAGGCTGAGGACTGAAGCCAAGAGCTATGCT  750

seq1  TGTAGCAACCACAAAGACTCTGGATGTGGGTGAGCCTGGGACCATATTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAACCACAAAGACTCTGGATGTGGGTGAGCCTGGGACCATATTCC  800

seq1  TGGGTGAAGACCAAGCTGG-AGAAGGCCCCAGGAGGGGAAGCTGGCACTC  849
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  TGGGTGAAGACCAAGCTGGAAGAAGGCCCCAGGA-GGGAAGCTGGCACTC  849

seq1  ACGCTCTGCATCTTGGCCTCGGTGTCCACAATGTTCCTTTCCACCTGGTC  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACGCTCTGCATC-TGGCCTCGGTGTCCACAATGTTCCTTTCCACCTGGTC  898

seq1  TGCATTCTTCTGCAGCTGCTCAATCAGATCTGAGAGTTCCTTGTTGGAGA  949
      |||||||||||||||||||||||||||||||||||||| |||||  ||||
seq2  TGCATTCTTCTGCAGCTGCTCAATCAGATCTGAGAGTT-CTTGT--GAGA  945

seq1  TGCTGTGGATGGAAGGAACAGAGAGGGAGGGCTCAGTGCAAGCCAGCCTC  999
      |||||||||| ||||||||| | ||||| |||||| |||||| |||||| 
seq2  TGCTGTGGAT-GAAGGAACAAAAAGGGA-GGCTCA-TGCAAG-CAGCCT-  990

seq1  CAGCCTCCCAGGCTGGACCCTCCCTAGGCCCCAGACAGGACCTGCCAACC  1049
      |||||| ||| |||||| ||| |||||||| |||| ||   ||| |||||
seq2  CAGCCT-CCAAGCTGGAACCT-CCTAGGCCTCAGAAAG--ACTG-CAACC  1035

seq1  CAGCCAGACTTCCAGGAGCTAGCCTGTCCCAGCAGGATGAAGCCACTAAC  1099
      ||||||||  | || ||||||||||||  ||||| |||||||||||||||
seq2  CAGCCAGAACTTCA-GAGCTAGCCTGT-TCAGCA-GATGAAGCCACTAAC  1082

seq1  ACACAAATAGCGCACAGGGCAGG  1122
      | || ||||||||||| ||||||
seq2  A-ACCAATAGCGCACA-GGCAGG  1103