BAC Information

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BAC

Clone NameB6Ng01-047C16
Chromosome16 (Build37)
Map Location 94,509,967 - 94,587,096
singlet/doubletdoublet
Overlap geneLOC100040857, Dscr6, LOC545178, Pigp
Upstream geneSetd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2, Hlcs, LOC622832
Downstream geneTtc3, Dscr3, Dyrk1a, Kcnj6, LOC666201, Kcnj15, Erg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047C16.bB6Ng01-047C16.g
ACCDH872102DH872103
length937935
definitionDH872102|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C16, 5' end.DH872103|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,586,144 - 94,587,096)(94,509,967 - 94,510,918)
sequence
gaattctcttgtgcagatactgggcggttgcattgcccgtctacctcctt
atcacagttgtaattggttatgtgctcttatttggaatcaacatgatgag
tacctctccacttgactccattcatacgatcacaggtacgtttatatgaa
ataaaattatgaggcatagaggaaagagatattagtacttttatcagaaa
agcaatcagaaataggcctaagaaacacgttgggagaaagtcatctgata
cattcaacatggcatgatgattaatctcaattggcaacttgaaggaattt
agagtcaccagggaaaccaatactgagcattctatgaggtttatctagag
tcagtttattgaagtgggaagataccttaaatgtggtatgtacatgggct
ctaggtctgaataaaaaggagaaaataacctgaatataagcatttatccc
cgtctgcctcctgacggacaaatggtagacacacgtggtccgtcacctcc
tgctcctactgacataccttcccctccatggtgaactgtctccgtacaac
taagccttaagttgcatttgttagggactttgttacagcatgaggtaaat
agctaataatagctcgcggtgattgccatcatctgcacatcagcctgctg
agcagtgtgataggtctcaaccaaccacagagcttttcttcttctcttgc
agataactatgctaaaaaccaacagaggaaaaactaccaagaggatgcca
tcccagcattgagagatgtcctcattagtgaagtaaacaaatgttttcct
agagccaaagactcatacctaaaactgagctgtgtataacatcctaaacc
agtcattacagttgtgggctgaataattttgagcataatatatgatgtct
tttaatacccatatgacatgtaaacatgacagttgat
gaattcatcggagtttttaagagtggtttagaggttagccaataagatgt
gtctggccatttttacctgtgagttttacatccctgggttcaaacaaaaa
aataattatctgtacaaataattttacttttgttcttgtcattgaccccc
aaaccacactctatgataaccatttacagcttttgccctgcatcaggtat
tgaagtaaccaagagatgactcaaacacaggaggacccacaccgaatgca
aataccacgtttatactggggactgagcattcctcaggtgttcatatctt
attttaggtgtgctagcaaccttgaaaatctacttcaatcattttcagat
ttctggaaggattgtaatttgattttaaaaggttttagtctactaaaatc
aagggacacccagagcagaagagtcacagccctgaatctagaaagacaca
gtaaggatgtgtgggcaaagctagggttgagggacaagcaggagtgcaat
gaggcacagatacccataaggctgtgccctacttggggttctgaagcagg
gaagagccaagtaactgagttagcatagttagaaaaccaaaggtcatgaa
catgttcaaagtatcgaagaaattatctttggcaaattctctactctgat
ataaacctcaaagactttgttttaaataaaggctttgttttaaataatca
gcttagagactgccacagtggaaaagtccaccattggtgattattctttg
tgatgtctcttaaatggtttaagaaaactgagctcagatattctagaggg
cagatctgtgtgcactgcaccttcttgcgcagtggtactagtcatgtcta
atctacagctgtagctggaagctgagagatctcggtgtgtaatcacactg
atcttcttagatcattatttatgtgtacagctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_94586144_94587096
seq2: B6Ng01-047C16.b_46_982 (reverse)

seq1  ATCAACTGTCATGTTTTTACATGTCAATATTGGGTATTAAAAGGACAATC  50
      |||||||||||||  |||||||||| ||| |||||||||||| ||| |||
seq2  ATCAACTGTCATG--TTTACATGTC-ATA-TGGGTATTAAAA-GAC-ATC  44

seq1  AATATAATTATGCTCAAAATTATTCAGCCCACAACTGTAAATGACTGGTT  100
       |||| |||||||||||||||||||||||||||||||| ||||||||| |
seq2  -ATAT-ATTATGCTCAAAATTATTCAGCCCACAACTGT-AATGACTGG-T  90

seq1  TTAGGATGTTTATACACAGCTCAGTTTTAGGTATTGAGTTCTTTGGCTCC  150
      |||||||| |||||||||||||||||||||||| |||| ||||||||| |
seq2  TTAGGATG-TTATACACAGCTCAGTTTTAGGTA-TGAG-TCTTTGGCT-C  136

seq1  TAGGAAAAACATTTTGTTTACTTCACTAATGGGGACATCTCTCAATGCTG  200
      |||| |||||| ||||||||||||||||||| ||||||||||||||||||
seq2  TAGG-AAAACA-TTTGTTTACTTCACTAATGAGGACATCTCTCAATGCTG  184

seq1  GGATGGCATCCTCTTGGTAGTTTTTCCTCTGTTGGTTTTTAGCATAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCATCCTCTTGGTAGTTTTTCCTCTGTTGGTTTTTAGCATAGTTA  234

seq1  TCTGCAAGAGAAGAAGAAAAGCTCTGTGGTTGGTTGAGACCTATCACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGAGAAGAAGAAAAGCTCTGTGGTTGGTTGAGACCTATCACACT  284

seq1  GCTCAGCAGGCTGATGTGCAGATGATGGCAATCACCGCGAGCTATTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAGGCTGATGTGCAGATGATGGCAATCACCGCGAGCTATTATTA  334

seq1  GCTATTTACCTCATGCTGTAACAAAGTCCCTAACAAATGCAACTTAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTACCTCATGCTGTAACAAAGTCCCTAACAAATGCAACTTAAGGC  384

seq1  TTAGTTGTACGGAGACAGTTCACCATGGAGGGGAAGGTATGTCAGTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTACGGAGACAGTTCACCATGGAGGGGAAGGTATGTCAGTAGGA  434

seq1  GCAGGAGGTGACGGACCACGTGTGTCTACCATTTGTCCGTCAGGAGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGTGACGGACCACGTGTGTCTACCATTTGTCCGTCAGGAGGCAG  484

seq1  ACGGGGATAAATGCTTATATTCAGGTTATTTTCTCCTTTTTATTCAGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGATAAATGCTTATATTCAGGTTATTTTCTCCTTTTTATTCAGACC  534

seq1  TAGAGCCCATGTACATACCACATTTAAGGTATCTTCCCACTTCAATAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCCATGTACATACCACATTTAAGGTATCTTCCCACTTCAATAAAC  584

seq1  TGACTCTAGATAAACCTCATAGAATGCTCAGTATTGGTTTCCCTGGTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTAGATAAACCTCATAGAATGCTCAGTATTGGTTTCCCTGGTGAC  634

seq1  TCTAAATTCCTTCAAGTTGCCAATTGAGATTAATCATCATGCCATGTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTCCTTCAAGTTGCCAATTGAGATTAATCATCATGCCATGTTGA  684

seq1  ATGTATCAGATGACTTTCTCCCAACGTGTTTCTTAGGCCTATTTCTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAGATGACTTTCTCCCAACGTGTTTCTTAGGCCTATTTCTGATT  734

seq1  GCTTTTCTGATAAAAGTACTAATATCTCTTTCCTCTATGCCTCATAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTGATAAAAGTACTAATATCTCTTTCCTCTATGCCTCATAATTT  784

seq1  TATTTCATATAAACGTACCTGTGATCGTATGAATGGAGTCAAGTGGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATATAAACGTACCTGTGATCGTATGAATGGAGTCAAGTGGAGAG  834

seq1  GTACTCATCATGTTGATTCCAAATAAGAGCACATAACCAATTACAACTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCATCATGTTGATTCCAAATAAGAGCACATAACCAATTACAACTGT  884

seq1  GATAAGGAGGTAGACGGGCAATGCAACCGCCCAGTATCTGCACAAGAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGAGGTAGACGGGCAATGCAACCGCCCAGTATCTGCACAAGAGAA  934

seq1  TTC  953
      |||
seq2  TTC  937

seq1: chr16_94509967_94510918
seq2: B6Ng01-047C16.g_68_1002

seq1  GAATTCATCGGAGTTTTTAAGAGTGGTTTAGAGGTTAGCCAATAAGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCGGAGTTTTTAAGAGTGGTTTAGAGGTTAGCCAATAAGATGT  50

seq1  GTCTGGCCATTTTTACCTGTGAGTTTTACATCCCTGGGTTCAAACAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCCATTTTTACCTGTGAGTTTTACATCCCTGGGTTCAAACAAAAA  100

seq1  AATAATTATCTGTACAAATAATTTTACTTTTGTTCTTGTCATTGACCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTATCTGTACAAATAATTTTACTTTTGTTCTTGTCATTGACCCCC  150

seq1  AAACCACACTCTATGATAACCATTTACAGCTTTTGCCCTGCATCAGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACACTCTATGATAACCATTTACAGCTTTTGCCCTGCATCAGGTAT  200

seq1  TGAAGTAACCAAGAGATGACTCAAACACAGGAGGACCCACACCGAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAACCAAGAGATGACTCAAACACAGGAGGACCCACACCGAATGCA  250

seq1  AATACCACGTTTATACTGGGGACTGAGCATTCCTCAGGTGTTCATATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCACGTTTATACTGGGGACTGAGCATTCCTCAGGTGTTCATATCTT  300

seq1  ATTTTAGGTGTGCTAGCAACCTTGAAAATCTACTTCAATCATTTTCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGTGTGCTAGCAACCTTGAAAATCTACTTCAATCATTTTCAGAT  350

seq1  TTCTGGAAGGATTGTAATTTGATTTTAAAAGGTTTTAGTCTACTAAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAGGATTGTAATTTGATTTTAAAAGGTTTTAGTCTACTAAAATC  400

seq1  AAGGGACACCCAGAGCAGAAGAGTCACAGCCCTGAATCTAGAAAGACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACACCCAGAGCAGAAGAGTCACAGCCCTGAATCTAGAAAGACACA  450

seq1  GTAAGGATGTGTGGGCAAAGCTAGGGTTGAGGGACAAGCAGGAGTGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGATGTGTGGGCAAAGCTAGGGTTGAGGGACAAGCAGGAGTGCAAT  500

seq1  GAGGCACAGATACCCATAAGGCTGTGCCCTACTTGGGGTTCTGAAGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACAGATACCCATAAGGCTGTGCCCTACTTGGGGTTCTGAAGCAGG  550

seq1  GAAGAGCCAAGTAACTGAGTTAGCATAGTTAGAAAACC-AAGGTCATGAA  599
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAAGAGCCAAGTAACTGAGTTAGCATAGTTAGAAAACCAAAGGTCATGAA  600

seq1  CATGTTCAAAGTATCGAAGAAATTATCTTTGGCAAATTCTCTACTCTGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCAAAGTATCGAAGAAATTATCTTTGGCAAATTCTCTACTCTGAT  650

seq1  ATAAACCTCAAAGACTTTGTTTTAAATAAAGGCTTTGTTTTAAATAATCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCTCAAAGACTTTGTTTTAAATAAAGGCTTTGTTTTAAATAATCA  700

seq1  GCTTAGAGACTGCCACAGTGGAAAAGTCCACCATTGGTGATTATTCTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAGACTGCCACAGTGGAAAAGTCCACCATTGGTGATTATTCTTTG  750

seq1  TGATGTCTCTTAAATGGTTTAAGAGAACTGAGCCCAGATATTCTAAGAGG  799
      |||||||||||||||||||||||| |||||||| |||||||||| ||| |
seq2  TGATGTCTCTTAAATGGTTTAAGAAAACTGAGCTCAGATATTCT-AGA-G  798

seq1  GGCAGATCTGTGTGCACTGCACCTTCCTTGCGCCAGGTGGTACTAGTCAT  849
      ||||||||||||||||||||||||| |||||||   ||||||||||||||
seq2  GGCAGATCTGTGTGCACTGCACCTT-CTTGCGC--AGTGGTACTAGTCAT  845

seq1  GTCTATTCCTACAGCTGTAAGCTTGGGAAGCCTGAGAGATCTCGGTGTGT  899
      ||||| | |||||||||| ||||  ||||| |||||||||||||||||||
seq2  GTCTAAT-CTACAGCTGT-AGCT--GGAAG-CTGAGAGATCTCGGTGTGT  890

seq1  AATTCACACTGTATTCTTCTTTAGATTCATTTAATTTTATGTGTACAGCT  949
      || ||||||||   ||||| ||||| |||||    |||||||||||||||
seq2  AA-TCACACTG--ATCTTC-TTAGA-TCATT---ATTTATGTGTACAGCT  932

seq1  GTC  952
      |||
seq2  GTC  935