BAC Information

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BAC

Clone NameB6Ng01-047F23
Chromosome16 (Build37)
Map Location 19,042,000 - 19,186,123
singlet/doubletdoublet
Overlap geneIgl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1
Upstream geneDgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira
Downstream geneIgl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047F23.bB6Ng01-047F23.g
ACCDH872253DH872254
length1,1711,006
definitionDH872253|Mus musculus domesticus DNA, BAC clone: B6Ng01-047F23, 5' end.DH872254|Mus musculus domesticus DNA, BAC clone: B6Ng01-047F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,042,000 - 19,043,212)(19,185,581 - 19,186,123)
sequence
gaattctagaccaagtttctggtccctgagagccattccctagggatcag
gaggacaaagcttcaaggtctacacatcccctctttctggaattgtggag
tctagtactctacatctcgcagagaatcagttgacattcacaaccactga
gggccagggctctcaacctgaggggtctttcctgcttgcagccacctgga
taacaatagtgctaaaatcagggtgtcctaaaccccagttttatctcctg
gaatcgaggtccctacaggagttgtccacagctacaaaaagcttttacag
gcccagtgcactcaaagttgattcataggcacttggtgcccttatcagtg
agaacacagctgcactattttgtccaagagtctggctggaaagaggcctt
gtactcaataatgcattccctaaataaagacattcattagggggtagaga
cagtagagccccctcctgggtcaggacaggatgccacatctgttccagcc
tgaggcacgggctgcctttctgagcctgtggcttccccagcccatggggc
cattttgggagagaacagctcgccagtgttgacaggcctgttcctctgct
tagcagactgaatattctatgggcttgaataatgcaggtttctcattcat
ccaaaccagccgaggctgcggaagaatcacagagaaagggtggccagatc
gatggcttcacccactttgagagaggatccgagtccattccaactaagcc
agggagatggctggtggtaggagtggtactccatctaaccttggtgacat
tgatccatcaggttagagagacggtgtactttttagttttcatcaacttg
acacaaggtagggccagatgggggaggcaagctcagctgagaaaacgcct
tcatcagattggcatgtaggcaagtctgcagaaacgctcatcggattgcg
tgtagcatctgatgtcacaaagcttcagtccaggctgaggagcaaagcac
tttctgttgtttctgtgcgattcttctgactgattctatcccacatgagc
acatgcaatgggaatctgtgctctgggctgtgctgtcagctctgacctcg
cattcgacttggatggttgaggaatggacatggactcatacagaagtctg
ggcagcatggatgctactgac
gaattccacacttacaccttaagtatacgcttctgctcctttcatttttt
aaaagatattttcttcatttacatttcaaatgcgatcctgaaagtcccct
ataccctccccctactctgctccccaacctacccacttctgcttcctggc
cctggcattcccctgtactggggcatatgaacttcacaagaccaagggcc
tctcctcccattgatgaccaacaaggccattctttgctaagtatgcaact
agagacacagctctgggcaggatagtggggggagtacttgttacttcatg
ttgttgttcctcctataaggttgcagacccttttagctccttgggtactt
tctctagctccttcattaggagccctatgttccatctaatagatgactgt
gagtatccatttctgtatttgccaggtcctgtcatagactcacaagagat
agctatatcagggtcttttcagcaaaatctttctggcatatgaaatagtg
tctgggtttggtggttttatatggaatagatccccaggtggggcatttct
tagtaaatgccaatttggctttatattgcctcatccttaatttctcttct
gcttgatgaatcaagatttcagttacttctgaacaaatctcgaaattaac
tctccagtgtgcacagccagaaattccaagatgcatctttgacagccagt
agcatcccaactgctgtccaggtacttgaggtttcacccaaaacttagac
tccattctctacagtagagtgggtttctgtggcctagaagaaattgtgta
tgttgacttagcatcaactatcctgtgctgttcctaagtgagatgttata
agactacttataaatctatcttatccctgtactgaaggttcaatgtttcc
caaactaacttatgcagtatttaaggaatatagtttaactttaagtgatt
gtactcttttaaaacctgacaggtagacaccttcataaagtggttgcctt
taaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_19042000_19043212
seq2: B6Ng01-047F23.b_42_1212

seq1  GAATTCTAGACCAAGTTTCTGGTCCCTGAGAGCCATTCCCTAGGGATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACCAAGTTTCTGGTCCCTGAGAGCCATTCCCTAGGGATCAG  50

seq1  GAGGACAAAGCTTCAAGGTCTACACATCCCCTCTTTCTGGAATTGTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAAAGCTTCAAGGTCTACACATCCCCTCTTTCTGGAATTGTGGAG  100

seq1  TCTAGTACTCTACATCTCGCAGAGAATCAGTTGACATTCACAACCACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTACTCTACATCTCGCAGAGAATCAGTTGACATTCACAACCACTGA  150

seq1  GGGCCAGGGCTCTCAACCTGAGGGGTCTTTCCTGCTTGCAGCCACCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGGGCTCTCAACCTGAGGGGTCTTTCCTGCTTGCAGCCACCTGGA  200

seq1  TAACAATAGTGCTAAAATCAGGGTGTCCTAAACCCCAGTTTTATCTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATAGTGCTAAAATCAGGGTGTCCTAAACCCCAGTTTTATCTCCTG  250

seq1  GAATCGAGGTCCCTACAGGAGTTGTCCACAGCTACAAAAAGCTTTTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGAGGTCCCTACAGGAGTTGTCCACAGCTACAAAAAGCTTTTACAG  300

seq1  GCCCAGTGCACTCAAAGTTGATTCATAGGCACTTGGTGCCCTTATCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGCACTCAAAGTTGATTCATAGGCACTTGGTGCCCTTATCAGTG  350

seq1  AGAACACAGCTGCACTATTTTGTCCAAGAGTCTGGCTGGAAAGAGGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAGCTGCACTATTTTGTCCAAGAGTCTGGCTGGAAAGAGGCCTT  400

seq1  GTACTCAATAATGCATTCCCTAAATAAAGACATTCATTAGGGGGTAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCAATAATGCATTCCCTAAATAAAGACATTCATTAGGGGGTAGAGA  450

seq1  CAGTAGAGCCCCCTCCTGGGTCAGGACAGGATGCCACATCTGTTCCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGCCCCCTCCTGGGTCAGGACAGGATGCCACATCTGTTCCAGCC  500

seq1  TGAGGCACGGGCTGCCTTTCTGAGCCTGTGGCTTCCCCAGCCCATGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCACGGGCTGCCTTTCTGAGCCTGTGGCTTCCCCAGCCCATGGGGC  550

seq1  CATTTTGGGAGAGAACAGCTCGCCAGTGTTGACAGGCCTGTTCCTCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGGAGAGAACAGCTCGCCAGTGTTGACAGGCCTGTTCCTCTGCT  600

seq1  TAGCAGACTGAATATTCTATGGGCTTGAATAATGCAGGTTTCTCATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGACTGAATATTCTATGGGCTTGAATAATGCAGGTTTCTCATTCAT  650

seq1  CCAAACCAGCCGAGGCTGCGGAAGAATCACAGAGAAAGGGTGGCCAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAGCCGAGGCTGCGGAAGAATCACAGAGAAAGGGTGGCCAGATC  700

seq1  GATGGCTTCACCCACTTTGAGAGAGGATCCGAGTCCATTCCAACTAAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTCACCCACTTTGAGAGAGGATCCGAGTCCATTCCAACTAAGCC  750

seq1  AGGGAGATGGCTGGTGGTAGGAGTGGTACTCCATCTAACCTTGGTGACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATGGCTGGTGGTAGGAGTGGTACTCCATCTAACCTTGGTGACAT  800

seq1  TGATCCATCAGGTTAGAGAGACGGTGTACTTTTTAGTTTTCATCAACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATCAGGTTAGAGAGACGGTGTACTTTTTAGTTTTCATCAACTTG  850

seq1  ACACAAGGTAGGGCCAGATGGGGGAGGCAAGCTCAGCTGAGAAAAGGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACACAAGGTAGGGCCAGATGGGGGAGGCAAGCTCAGCTGAGAAAACGCCT  900

seq1  CCATCAGATTGGCATGTAGGCAAGTCTGCAGAAAAGGCCTCCATCGGATT  950
       ||||||||||||||||||||||||||||||||| |  || |||||||||
seq2  TCATCAGATTGGCATGTAGGCAAGTCTGCAGAAACG--CT-CATCGGATT  947

seq1  GGCGTGTAGGCAATCTGATGTCACAAAGCCTTCAGTCCCAGGCCTGAGGA  1000
       ||||||||   |||||||||||||||| ||||||| ||||| |||||||
seq2  -GCGTGTAG--CATCTGATGTCACAAAG-CTTCAGT-CCAGG-CTGAGGA  991

seq1  GCAAAAGGCACTTTCTGGTTTTGTTTTCTGTGCGATTCTCCTGACTGATT  1050
      |||||  ||||||||||   ||| ||||||||||||||| ||||||||||
seq2  GCAAA--GCACTTTCTG---TTG-TTTCTGTGCGATTCTTCTGACTGATT  1035

seq1  TCTTATCCCCACCATGAGGCACCAATGCCAATGGGAATCTGTGCTCCTGT  1100
         ||||||   ||||| ||||  ||| ||||||||||||||||| ||| 
seq2  --CTATCCC--ACATGA-GCAC--ATG-CAATGGGAATCTGTGCT-CTGG  1076

seq1  GCTGTGCTGTCCAGCCTCTGACCTCAGCAGTGTCAGACTTGGGATGGGTT  1150
      |||||||||| ||| |||||||||| |||   |  ||||| |||| ||||
seq2  GCTGTGCTGT-CAG-CTCTGACCTC-GCA---TTCGACTT-GGAT-GGTT  1118

seq1  GAGGAATGGACCAATTTTGACTCTATCAAAGGATGCTGGGCAGCAAGGGG  1200
      |||||||||||     | ||||| || | || |  ||||||||||   ||
seq2  GAGGAATGGAC----ATGGACTC-AT-ACAGAAGTCTGGGCAGCA--TGG  1160

seq1  ATGCAGAACTGAC  1213
      ||||   ||||||
seq2  ATGC--TACTGAC  1171

seq1: chr16_19185581_19186123
seq2: B6Ng01-047F23.g_67_609 (reverse)

seq1  CCCCACCTGGGGATCTATTCCATATAAAACCACCAAACCCAGACACTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTGGGGATCTATTCCATATAAAACCACCAAACCCAGACACTATT  50

seq1  TCATATGCCAGAAAGATTTTGCTGAAAAGACCCTGATATAGCTATCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGCCAGAAAGATTTTGCTGAAAAGACCCTGATATAGCTATCTCTT  100

seq1  GTGAGTCTATGACAGGACCTGGCAAATACAGAAATGGATACTCACAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCTATGACAGGACCTGGCAAATACAGAAATGGATACTCACAGTCA  150

seq1  TCTATTAGATGGAACATAGGGCTCCTAATGAAGGAGCTAGAGAAAGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAGATGGAACATAGGGCTCCTAATGAAGGAGCTAGAGAAAGTACC  200

seq1  CAAGGAGCTAAAAGGGTCTGCAACCTTATAGGAGGAACAACAACATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGCTAAAAGGGTCTGCAACCTTATAGGAGGAACAACAACATGAAG  250

seq1  TAACAAGTACTCCCCCCACTATCCTGCCCAGAGCTGTGTCTCTAGTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGTACTCCCCCCACTATCCTGCCCAGAGCTGTGTCTCTAGTTGCA  300

seq1  TACTTAGCAAAGAATGGCCTTGTTGGTCATCAATGGGAGGAGAGGCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGCAAAGAATGGCCTTGTTGGTCATCAATGGGAGGAGAGGCCCTT  350

seq1  GGTCTTGTGAAGTTCATATGCCCCAGTACAGGGGAATGCCAGGGCCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGTGAAGTTCATATGCCCCAGTACAGGGGAATGCCAGGGCCAGGA  400

seq1  AGCAGAAGTGGGTAGGTTGGGGAGCAGAGTAGGGGGAGGGTATAGGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGTGGGTAGGTTGGGGAGCAGAGTAGGGGGAGGGTATAGGGGAC  450

seq1  TTTCAGGATCGCATTTGAAATGTAAATGAAGAAAATATCTTTTAAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGATCGCATTTGAAATGTAAATGAAGAAAATATCTTTTAAAAAAT  500

seq1  GAAAGGAGCAGAAGCGTATACTTAAGGTGTAAGTGTGGAATTC  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGCAGAAGCGTATACTTAAGGTGTAAGTGTGGAATTC  543