BAC Information

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BAC

Clone NameB6Ng01-047J02
Chromosome4 (Build37)16 (Build37)
Map Location 10,395,603 - 10,396,35955,386,623 - 55,387,170
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAsph, Gdf6, 4930448K20Rik, LOC666840
Downstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047J02.bB6Ng01-047J02.g
ACCDH872394DH872395
length757801
definitionDH872394|Mus musculus domesticus DNA, BAC clone: B6Ng01-047J02, 5' end.DH872395|Mus musculus domesticus DNA, BAC clone: B6Ng01-047J02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,395,603 - 10,396,359)(55,386,623 - 55,387,170)
sequence
gaattctgtctcacctccaactttctaacagctatttcaataatgaagtt
aacttttctttgctaccaaatgttacaagaaaagtaagctgtttttcttt
atattgttggtaaacatattggccttgcttgcctcagtcagtaatctgca
gcagtgcaaatagaataatgcccagaacatcctacttcaacaaagcagat
accagaatttatatgggaggatttcccatgaatttgtatttcctaggttg
cccagttttcatgttttggatcaaaggctaatcatgaattaaaatatctt
ctcatgcctcctacctaacgcacaacccaggtctcttcatgacttggctt
gaatatcctggaaaaccagctgaaattcaatcttggtctgtaagccttgg
cacagcatgtaccctctttcctttccagatgtccccaggggccacgtttt
ctctgtttgtgttggtaggctttccccagtacaggtttatgtcacctttc
ttgaggtcccatgtcaatcatccctgatattggtcactacacttcagaaa
aataaaaaaataaaacttcagagacaatgagaagtatgaaaattttctat
agcattttccaaaacgatcagtttatttctggacactctctgttgcagcc
ccaacccccatctcagtggtattctcatgggctctgacatcctgtgacat
actgaaccatccactatttgactattctttcttcttccagtgaccacagc
cctatgt
gaattcctgatctttccaagacttttatcatgaaggggtgttggatattg
tcaaatgctttctcagcatctaacgaggtgatcatgttatttttgtcttt
gattttgtttatatagtggattacattgatggatttccatatattaaacc
atccctgcatccttgggatgaagcctacttggtcatgatgtatgatcgtt
ttgatgtgttcttggattcggtttgcgaggattttattgagtatgtttgc
atcgatatttataaggaaaattggactgaatttctctttctttgttggat
ctttgtgtgctttaggtatcagggtaattgtggcttcatagaatgaatta
ggaagagtattttctgtttctattttgtggaatagtttgagtagaattag
aactaggtcttctttgaaggtctgatagaactctgcagtaaacccttgtg
gtcctgaactttttttgattaggagactattgatgactgcttctatttct
ttaggagaaatgggactgtttagatcgttaatctgatcctgatttaactt
tggtacctggtatctgtctaggaagttgtccatttcatccagattttcta
gtttttgttgagtatagccttctgtagtaggatctgatgatgtttaggat
ttcctcaggttctgttgttatgtctcctttttcatttttgattttgttaa
ttagatactgtccctgtaccctctagtaagtctggctagggttttatcta
tcttgtgattttctcaaaaaccagctcctgtttggttgattcttgaatag
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_10395603_10396359
seq2: B6Ng01-047J02.b_45_801

seq1  GAATTCTGTCTCACCTCCAACTTTCTAACAGCTATTTCAATAATGAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTCACCTCCAACTTTCTAACAGCTATTTCAATAATGAAGTT  50

seq1  AACTTTTCTTTGCTACCAAATGTTACAAGAAAAGTAAGCTGTTTTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCTTTGCTACCAAATGTTACAAGAAAAGTAAGCTGTTTTTCTTT  100

seq1  ATATTGTTGGTAAACATATTGGCCTTGCTTGCCTCAGTCAGTAATCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTGGTAAACATATTGGCCTTGCTTGCCTCAGTCAGTAATCTGCA  150

seq1  GCAGTGCAAATAGAATAATGCCCAGAACATCCTACTTCAACAAAGCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCAAATAGAATAATGCCCAGAACATCCTACTTCAACAAAGCAGAT  200

seq1  ACCAGAATTTATATGGGAGGATTTCCCATGAATTTGTATTTCCTAGGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAATTTATATGGGAGGATTTCCCATGAATTTGTATTTCCTAGGTTG  250

seq1  CCCAGTTTTCATGTTTTGGATCAAAGGCTAATCATGAATTAAAATATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTTTCATGTTTTGGATCAAAGGCTAATCATGAATTAAAATATCTT  300

seq1  CTCATGCCTCCTACCTAACGCACAACCCAGGTCTCTTCATGACTTGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCCTCCTACCTAACGCACAACCCAGGTCTCTTCATGACTTGGCTT  350

seq1  GAATATCCTGGAAAACCAGCTGAAATTCAATCTTGGTCTGTAAGCCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCCTGGAAAACCAGCTGAAATTCAATCTTGGTCTGTAAGCCTTGG  400

seq1  CACAGCATGTACCCTCTTTCCTTTCCAGATGTCCCCAGGGGCCACGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATGTACCCTCTTTCCTTTCCAGATGTCCCCAGGGGCCACGTTTT  450

seq1  CTCTGTTTGTGTTGGTAGGCTTTCCCCAGTACAGGTTTATGTCACCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTGTGTTGGTAGGCTTTCCCCAGTACAGGTTTATGTCACCTTTC  500

seq1  TTGAGGTCCCATGTCAATCATCCCTGATATTGGTCACTACACTTCAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTCCCATGTCAATCATCCCTGATATTGGTCACTACACTTCAGAAA  550

seq1  AATAAAAAAATAAAACTTCAGAGACAATGAGAAGTATG-AAATTTTCTAT  599
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATAAAAAAATAAAACTTCAGAGACAATGAGAAGTATGAAAATTTTCTAT  600

seq1  AGCATTTTCCAAAACGATCAGTTTATTTCTGGACACTCTCTGTTGCAGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTCCAAAACGATCAGTTTATTTCTGGACACTCTCTGTTGCAGCC  650

seq1  CCAACCCCCATCTCAGTGGTATTCTCATGGGCTCTGACATCCTGTGACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCCCATCTCAGTGGTATTCTCATGGGCTCTGACATCCTGTGACAT  700

seq1  ACTGAACCATCCACTATTTGACTATTCTTTCTTCTTCCAGTGACCCACAG  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTGAACCATCCACTATTTGACTATTCTTTCTTCTTCCAGTGA-CCACAG  749

seq1  CCCTATGT  757
      ||||||||
seq2  CCCTATGT  757

seq1: chr16_55386623_55387170
seq2: B6Ng01-047J02.g_324_869 (reverse)

seq1  ACTATTCAAAGAATCAACCAAATGAGGAGCTGGTTCTTTGAGAAAATCAA  50
      ||||||| ||||||||||||||  ||||||||||| |||||||||||| |
seq2  ACTATTC-AAGAATCAACCAAA-CAGGAGCTGGTT-TTTGAGAAAATC-A  46

seq1  CAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGGCACAGGGACAGCA  100
      ||||||||||||| || |||||||||| ||||||||| |||||||||| |
seq2  CAAGATAGATAAAACCCTAGCCAGACTTACTAGAGGGTACAGGGACAGTA  96

seq1  TCCTAATTAA-AAAGTCAGAAATGAAAAGGGAGACATAACAACAGATCCT  149
      | |||||||| ||| ||| ||||||||| ||||||||||||||||| |||
seq2  T-CTAATTAACAAAATCAAAAATGAAAAAGGAGACATAACAACAGAACCT  145

seq1  GAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAAC  199
      || ||||||| ||||| ||||||||||| ||||| |||||||||||||||
seq2  GAGGAAATCCTAAACATCATCAGATCCTACTACAGAAGGCTATACTCAAC  195

seq1  -AAAACTGGAGAACCTGGATGAAATGAACAAGTTTCTAGACAGATACCAG  248
       |||||| || || |||||||||||| |||| || |||||||||||||||
seq2  AAAAACTAGAAAATCTGGATGAAATGGACAACTTCCTAGACAGATACCAG  245

seq1  GTACCAAAGTTAAACCAAGATCAGATTAGTGATCTAAACAGTCCTATATC  298
      |||||||||||||| || ||||||||||  |||||||||||||| || ||
seq2  GTACCAAAGTTAAATCAGGATCAGATTAACGATCTAAACAGTCCCATTTC  295

seq1  CCCTAAAGAAATAGAAGCAGTCATTAATAGCCTCCCAATCAAAAAAAGCC  348
       ||||||||||||||||||||||| ||||| |||| ||||||||||||  
seq2  TCCTAAAGAAATAGAAGCAGTCATCAATAGTCTCCTAATCAAAAAAAGTT  345

seq1  TAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGAT  398
       ||||||| | ||||||| |||||||||||||||||||||||||||||| 
seq2  CAGGACCACAAGGGTTTACTGCAGAGTTCTATCAGACCTTCAAAGAAGAC  395

seq1  CTAATCCTAGTTCTCCACAAACTATTCCACAAAATAGAAACAG-AAGGAT  447
      ||| | ||| |||| | |||||||||||||||||||||||||| ||  | 
seq2  CTAGTTCTAATTCTACTCAAACTATTCCACAAAATAGAAACAGAAAATAC  445

seq1  TCTACACAACTCATTCTATGAAGCCACAATTACTCTGATACCTAAACCAC  497
      ||| |  || ||||||||||||||||||||||| |||||||||||| |||
seq2  TCTTCCTAATTCATTCTATGAAGCCACAATTACCCTGATACCTAAAGCAC  495

seq1  AGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAAT  547
      | |||||||||||||||| |||||| ||||| ||||||| |||||| |||
seq2  ACAAAGATCCAACAAAGAAAGAGAAATTCAGTCCAATTTTCCTTATAAAT  545

seq1  A  548
      |
seq2  A  546