BAC Information

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BAC

Clone NameB6Ng01-047J18
Chromosome16 (Build37)
Map Location 4,355,239 - 4,356,317
singlet/doubletsinglet
Overlap geneAdcy9
Upstream geneLOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, EG620313
Downstream geneSrl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047J18.g
ACCDH872426
length1,043
definitionDH872426|Mus musculus domesticus DNA, BAC clone: B6Ng01-047J18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactgcattttattcttgattccagacttgattactatcagagtc
aggtatgtatcccttgcattgtgggtctaaaaatacaggagacatttaga
aaggattcttccaggagataaaagtagagactgagctagagtcatcgtgg
cccgtgctgacaggagctcagcctctgctgatgtggcgaagccctttagg
ctgactggttctaggtgcttcagaacgtgactctctgaggagtgtggttt
ctgtcttgtactgtgttatccaccctggagttaggtgggagtttacctgt
aacttagaagcatctcctgaggcatgagggcccccatagctgctcagggc
agagtgtcttacctgtatcattggaaaaaaccacacacggtactggtacc
accaggcaccattaccaattacagcacagtcagcaggcctgttgtaacac
tttggcttggaatcaatgtctgacacagtctttttgacacttctgaaatg
ctcattatgggatgtcagtcatctttaggagtggttcctttctaagtgag
gcagaaaccagaaaatgtaattctattcaatgccttctgaaaaacagtct
tgtgcaagctttgtcttggtggacaaaacccaccaaataatgggccagat
tttggtcacagaatccagcacttcagactgctttggggatgtccctggaa
ttttttatgtgaaagaatatgttaaattcagttatttcaagaaaaaaaat
acttaaaaccctttagaaaatgaccatggcaacattagtggaatacctaa
aagccaggaggcagcagaggccaagaatgtacaggccttgtaaaaacagc
actcacacagcaggactcaacagagacttggagtcggtggagtggaaagc
tgtgcagtgagtgtaatgtcttttgaaccatagtgagttatgcttgctta
gttagcagctctgtagcagtacttgtgagactgtgagctgagagttataa
tgatacaagttctgcacgaacctcgtctcgaagtagctgcagt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_4355239_4356317
seq2: B6Ng01-047J18.g_70_1112 (reverse)

seq1  ACTGCAGCTAACCTCTGGAGAACGAGTGTCGCTGGCAGAACCCTCTGTAT  50
      ||||||||||  || | ||| |||||  |||   |||||||    |||||
seq2  ACTGCAGCTA--CT-TCGAG-ACGAGGTTCG--TGCAGAAC---TTGTAT  41

seq1  CATTATAACCTCCTTCAGCCCTCACCAGTCTTCCACAGGTACTGCTACAG  100
      |||||||| |||  ||||  |||| ||||||  |||| ||||||||||||
seq2  CATTATAA-CTC--TCAG--CTCA-CAGTCT--CACAAGTACTGCTACAG  83

seq1  AGCTTGCTAACAAAGCAAAGCATAAACTCCACTATGGTTCAAAAAGACAT  150
      ||| ||||||| |||| |||||| |||| ||||||||||| |||||||| 
seq2  AGC-TGCTAACTAAGC-AAGCAT-AACT-CACTATGGTTC-AAAAGACA-  127

seq1  TTACAACTCAACCTGCACAGCCTTTCCACTCCACCGACCTCCCAAGTCCT  200
      |||| |||||  |||||||| |||||||||||||||||   |||||| ||
seq2  TTAC-ACTCA--CTGCACAG-CTTTCCACTCCACCGAC--TCCAAGT-CT  170

seq1  CTGTTGAGTCCCCTGCTGTGTGAGGTGCTGTTTTTTACAAGGCCTGTACA  250
      |||||||||  |||||||||||| |||||| |||||||||||||||||||
seq2  CTGTTGAGT--CCTGCTGTGTGA-GTGCTG-TTTTTACAAGGCCTGTACA  216

seq1  TTCTTGGCCTCCTGCTGCCTCCTGGCTTTTTAGGTATTCCACTAATGTTG  300
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  TTCTTGGCCT-CTGCTGCCTCCTGGC-TTTTAGGTATTCCACTAATGTTG  264

seq1  CCATGGTCATTTTCCTAAGGGTTTTAAGTATTTTTTTTCCTGAAATAACT  350
      ||||||||||||||  ||||||||||||||||||||||| ||||||||||
seq2  CCATGGTCATTTTCTAAAGGGTTTTAAGTATTTTTTTTCTTGAAATAACT  314

seq1  GAATTTAACATATTCTTTCACATAAAAAATTCCAGGGACATCCCCAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAACATATTCTTTCACATAAAAAATTCCAGGGACATCCCCAAAGC  364

seq1  AGTCTGAAGTGCTGGATTCTGTGACCAAAATCTGGCCCATTATTTGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAAGTGCTGGATTCTGTGACCAAAATCTGGCCCATTATTTGGTGG  414

seq1  GTTTTGTCCACCAAGACAAAGCTTGCACAAGACTGTTTTTCAGAAGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCCACCAAGACAAAGCTTGCACAAGACTGTTTTTCAGAAGGCAT  464

seq1  TGAATAGAATTACATTTTCTGGTTTCTGCCTCACTTAGAAAGGAACCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGAATTACATTTTCTGGTTTCTGCCTCACTTAGAAAGGAACCACT  514

seq1  CCTAAAGATGACTGACATCCCATAATGAGCATTTCAGAAGTGTCAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGATGACTGACATCCCATAATGAGCATTTCAGAAGTGTCAAAAAG  564

seq1  ACTGTGTCAGACATTGATTCCAAGCCAAAGTGTTACAACAGGCCTGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCAGACATTGATTCCAAGCCAAAGTGTTACAACAGGCCTGCTGA  614

seq1  CTGTGCTGTAATTGGTAATGGTGCCTGGTGGTACCAGTACCGTGTGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGTAATTGGTAATGGTGCCTGGTGGTACCAGTACCGTGTGTGGT  664

seq1  TTTTTCCAATGATACAGGTAAGACACTCTGCCCTGAGCAGCTATGGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAATGATACAGGTAAGACACTCTGCCCTGAGCAGCTATGGGGGC  714

seq1  CCTCATGCCTCAGGAGATGCTTCTAAGTTACAGGTAAACTCCCACCTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGCCTCAGGAGATGCTTCTAAGTTACAGGTAAACTCCCACCTAAC  764

seq1  TCCAGGGTGGATAACACAGTACAAGACAGAAACCACACTCCTCAGAGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGTGGATAACACAGTACAAGACAGAAACCACACTCCTCAGAGAGT  814

seq1  CACGTTCTGAAGCACCTAGAACCAGTCAGCCTAAAGGGCTTCGCCACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTCTGAAGCACCTAGAACCAGTCAGCCTAAAGGGCTTCGCCACATC  864

seq1  AGCAGAGGCTGAGCTCCTGTCAGCACGGGCCACGATGACTCTAGCTCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGCTGAGCTCCTGTCAGCACGGGCCACGATGACTCTAGCTCAGT  914

seq1  CTCTACTTTTATCTCCTGGAAGAATCCTTTCTAAATGTCTCCTGTATTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTTTTATCTCCTGGAAGAATCCTTTCTAAATGTCTCCTGTATTTT  964

seq1  TAGACCCACAATGCAAGGGATACATACCTGACTCTGATAGTAATCAAGTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCACAATGCAAGGGATACATACCTGACTCTGATAGTAATCAAGTC  1014

seq1  TGGAATCAAGAATAAAATGCAGTGAATTC  1079
      |||||||||||||||||||||||||||||
seq2  TGGAATCAAGAATAAAATGCAGTGAATTC  1043