BAC Information

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BAC

Clone NameB6Ng01-047M09
Chromosome16 (Build37)
Map Location 94,794,801 - 94,930,149
singlet/doubletdoublet
Overlap geneDyrk1a
Upstream geneDopey2, Morc3, Chaf1b, Cldn14, Sim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3, Dscr3
Downstream geneKcnj6, LOC666201, Kcnj15, Erg, Ets2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047M09.bB6Ng01-047M09.g
ACCDH872539DH872540
length454985
definitionDH872539|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M09, 5' end.DH872540|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,929,694 - 94,930,149)(94,794,801 - 94,795,798)
sequence
cataagcacactgggactccacagcacgtccacaccacaggaaaccaggc
gagaacacttgggaacattctggcgctgtctctggcactttctttagtta
atgaaaaattaatattcagaaatagaagtagcgtgctctcatcaaaaact
taactaattcaccatcagcaactttaaggaaaaaaaaaacctaaaagagg
cgctttgaacagaatgaaaacaatcttagtggagaacctagacaggcaga
aagcaacaatgagtaggaagagggcagagctggccaggtggctcagaggg
taaagaagcatgccagcaagcccgaggtcacaggttcgatgctcaggacc
catgtctcagaagcagagaacacattttcgttcttcattctctctctctc
tctctctctctctctctctctctctctctctctctctgtttctgccaccc
cccc
gaattctgtggtatttctagacagtaacttggccctaacactctattttg
tgttgagtgttttggtgggtttcctccatttgtacttgtctactttcgac
ttgggaacagatctcttgcttggacataacagacagggtcacctgtaact
tcacagtttgcctgtcacagctgtaggaccagagtagtagtgtatggagt
ggtatgtcttctgaaggcagggaccctgtgctgtcctacccattgtcatg
tttgatggcaagacagtctgtgggaactcataacccagtgctcgcatagg
gtgggattacaaaatatggggattaaaaattggtgtttaattacttggaa
aaacttattaaattattttaagttacctaaagttgtccctaaatgaagga
atcttttgaaattatgcttcacctcaacttcataatgttaagctgttgag
tgtaaagtcttctgttgggtacgtgagagttgaatgcaggtttcatgtaa
ctaaaataaaggttcacattagctagtgcaggcaagtgttatttttaaaa
ttttagttcatattgacatataaaaacaaaatttgacttggaagtacatt
gtattaaacagctatgctttttaaagttatattttggctttgaaattctc
atttgagcattctgtagtgagttacagttcttggttgagagacaaaccta
acgttggacatctaacctgctgtgggtctaccaaggcagatttgtgctga
caaggagccatgctggattcttggcagttagttctgaagagatgccattt
ttctcaaggatgattttttatgtatgttattattgttaataaactaaaat
ttgacaagaaatacttttgactaaggataatgtgtgtgtgtgtgtgtata
tgcagagtctgtaaaatcatgtcttgatgagtcattcatcatacaaatga
atctcataatgaacactttgctggtgggactgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_94929694_94930149
seq2: B6Ng01-047M09.b_48_507 (reverse)

seq1  GGGGGGG----AGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  46
      |||||||    ||||| |||||||||||||||||||||||||||||||||
seq2  GGGGGGGTGGCAGAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAATGAAGAACGAAAATGTGTTCTCTGCTTCTGAGA  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAATGAAGAACGAAAATGTGTTCTCTGCTTCTGAGA  100

seq1  CATGGGTCCTGAGCATCGAACCTGTGACCTCGGGCTTGCTGGCATGCTTC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTCCTGAGCATCGAACCTGTGACCTCGGGCTTGCTGGCATGCTTC  150

seq1  TTTACCCTCTGAGCCACCTGGCCAGCTCTGCCCTCTTCCTACTCATTGTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTCTGAGCCACCTGGCCAGCTCTGCCCTCTTCCTACTCATTGTT  200

seq1  GCTTTCTGCCTGTCTAGGTTCTCCACTAAGATTGTTTTCATTCTGTTCAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGCCTGTCTAGGTTCTCCACTAAGATTGTTTTCATTCTGTTCAA  250

seq1  AGCGCCTCTTTTAGGTTTTTTTTTTCCTTAAAGTTGCTGATGGTGAATTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCTCTTTTAGGTTTTTTTTTTCCTTAAAGTTGCTGATGGTGAATTA  300

seq1  GTTAAGTTTTTGATGAGAGCACGCTACTTCTATTTCTGAATATTAATTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTTTTTGATGAGAGCACGCTACTTCTATTTCTGAATATTAATTTT  350

seq1  TCATTAACTAAAGAAAGTGCCAGAGACAGCGCCAGAATGTTCCCAAGTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAACTAAAGAAAGTGCCAGAGACAGCGCCAGAATGTTCCCAAGTGT  400

seq1  TCTCGCCTGGTTTCCTGTGGTGTGGACGTGCTGTGGAGTCCCAGTGTGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCCTGGTTTCCTGTGGTGTGGACGTGCTGTGGAGTCCCAGTGTGCT  450

seq1  TATGGAATTC  456
      ||||||||||
seq2  TATGGAATTC  460

seq1: chr16_94794801_94795798
seq2: B6Ng01-047M09.g_69_1053

seq1  GAATTCTGTGGTATTTCTAGACAGTAACTTGGCCCTAACACTCTATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGTATTTCTAGACAGTAACTTGGCCCTAACACTCTATTTTG  50

seq1  TGTTGAGTGTTTTGGTGGGTTTCCTCCATTTGTACTTGTCTACTTTCGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGTGTTTTGGTGGGTTTCCTCCATTTGTACTTGTCTACTTTCGAC  100

seq1  TTGGGAACAGATCTCTTGCTTGGACATAACAGACAGGGTCACCTGTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAACAGATCTCTTGCTTGGACATAACAGACAGGGTCACCTGTAACT  150

seq1  TCACAGTTTGCCTGTCACAGCTGTAGGACCAGAGTAGTAGTGTATGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTTGCCTGTCACAGCTGTAGGACCAGAGTAGTAGTGTATGGAGT  200

seq1  GGTATGTCTTCTGAAGGCAGGGACCCTGTGCTGTCCTACCCATTGTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTCTTCTGAAGGCAGGGACCCTGTGCTGTCCTACCCATTGTCATG  250

seq1  TTTGATGGCAAGACAGTCTGTGGGAACTCATAACCCAGTGCTCGCATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGGCAAGACAGTCTGTGGGAACTCATAACCCAGTGCTCGCATAGG  300

seq1  GTGGGATTACAAAATATGGGGATTAAAAATTGGTGTTTAATTACTTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATTACAAAATATGGGGATTAAAAATTGGTGTTTAATTACTTGGAA  350

seq1  AAACTTATTAAATTATTTTAAGTTACCTAAAGTTGTCCCTAAATGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATTAAATTATTTTAAGTTACCTAAAGTTGTCCCTAAATGAAGGA  400

seq1  ATCTTTTGAAATTATGCTTCACCTCAACTTCATAATGTTAAGCTGTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGAAATTATGCTTCACCTCAACTTCATAATGTTAAGCTGTTGAG  450

seq1  TGTAAAGTCTTCTGTTGGGTACGTGAGAGTTGAATGCAGGTTTCATGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGTCTTCTGTTGGGTACGTGAGAGTTGAATGCAGGTTTCATGTAA  500

seq1  CTAAAATAAAGGTTCACATTAGCTAGTGCAGGCAAGTGTTATTTTTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAAAGGTTCACATTAGCTAGTGCAGGCAAGTGTTATTTTTAAAA  550

seq1  TTTTAGTTCATATTGACATATAAAAACAAAATTTGACTTGGAAGTACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTCATATTGACATATAAAAACAAAATTTGACTTGGAAGTACATT  600

seq1  GTATTAAACAGCTATGCTTTTTAAAGTTATATTTTGGCTTTGAAATTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAACAGCTATGCTTTTTAAAGTTATATTTTGGCTTTGAAATTCTC  650

seq1  ATTTGAGCATTCTGTAGTGAGTTACAGTTCTTGGTTGAGAGACAAACCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGCATTCTGTAGTGAGTTACAGTTCTTGGTTGAGAGACAAACCTA  700

seq1  ACGTTGGACATCTAACCTGCTGTGGGTCTACCAAGGCAGATTTGTGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGGACATCTAACCTGCTGTGGGTCTACCAAGGCAGATTTGTGCTGA  750

seq1  CAAGGAGCCATGCTGGATTCTTGGCAGTTAGTTCTGAAGAGATGCCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGCCATGCTGGATTCTTGGCAGTTAGTTCTGAAGAGATGCCATTT  800

seq1  TTCTCAAGGATGATTTTTTATGTATGTTATTATTGTTAATAAACTAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGGATGATTTTTTATGTATGTTATTATTGTTAATAAACTAAAAT  850

seq1  TTGACAAGAAATACTTTTTGACTAGGGAT-ATGTGTGTGTGTGTGTGTGA  899
      |||||||||||||| ||||||||| |||| |||||||||||||||||| |
seq2  TTGACAAGAAATAC-TTTTGACTAAGGATAATGTGTGTGTGTGTGTGT-A  898

seq1  TATGCAGGAGTCATGTAAAAGTCATGTCTTGATGAGTCATTTCATCATAC  949
      |||||| ||||| ||||||| |||||||||||||||||| ||||||||||
seq2  TATGCA-GAGTC-TGTAAAA-TCATGTCTTGATGAGTCA-TTCATCATAC  944

seq1  AAAATGGAAATCTCATAATTGAGACACTTTGCTTGGTGGGAACCTGCTG  998
       |||||  |||||||||| ||| ||||||||| ||||||||  ||||||
seq2  -AAATG--AATCTCATAA-TGA-ACACTTTGC-TGGTGGGA--CTGCTG  985