BAC Information

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BAC

Clone NameB6Ng01-047M19
Chromosome16 (Build37)
Map Location 26,573,577 - 26,713,686
singlet/doubletdoublet
Overlap geneIl1rap
Upstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057
Downstream geneGm606, Ostn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047M19.bB6Ng01-047M19.g
ACCDH872559DH872560
length1,0531,071
definitionDH872559|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M19, 5' end.DH872560|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,573,577 - 26,574,638)(26,712,604 - 26,713,686)
sequence
gaattcattgtttttaatggctgagtagtactccattgtgtaaatatacc
acaacttctctattcatttctctgttgagggacatctgggttttactgga
agatccagcaactcctctcctgggtatatacccagaagatgtcccaactt
gtaataaggacacatgctccactatgttcatagcagccttatttataata
gccagaagctggaaagaacacaaaccgttttccatattgagcaaaattct
ggcacagatcaaacaattcacactacttgctattatagtaacaaagtgat
gttttgcttcttcttccaatgtccagtcaagcacacttgcccagccttta
tctccactgcccttcatgttatttccagctaatgtcaaaagatccaccat
gaataattcttcccatctccccaggatatgagaaactagctttcactggg
cttagccagagtaccatactaacattcccacatttcataccaatcctgtt
gcatctcctagatttatatgtcagatagtgattgtatgaactaatacgct
tcccttctctctgttgagccacagacttttcccatacctccattcacttt
tgagatgtgacttgttaaatatccaaggctgggtccaaagtcacttcact
cgggccagctctgagcttgcaattctcctgtctcgggttcgggaagattg
agataaaattaatgctgccacattcctggaaacacaatcccacctctctg
cccaatccaagctattgttacctgtttctcttctcgatcttttctgaaca
gaggccattttccttgctcagcataccaagtgtaccaagggcacttgatt
gagctctcttgcatgttattgtgtcatgaagggagtgtgaccttctgcag
ctctgagtgggagtttagtgtggtttcacactacagctgtgtacattctg
taaatcattttctgtgattcaatctctctcactacaagcaggagaatcac
cgccgcctttgaacaacataaagtaaaacagaataaggttttgtttgttt
gtt
gaattcagggatgggtaggtgtttactctaagcatttccactggtggctg
accatgtataagcacagaaagaagtccaaaggcaaagtggcctcgggaag
agcagtagaaaggatataaagggaatacgctctgcaagatgcaagaataa
ttatgcattcttcaaaggactgtcagaaccccgaggaaggtcttacccag
atatatactgcagagtttctcatcactgttcacatagtagatagggtatt
atacattttgtggaggaataaataggaacatggatgagttgggcaaatta
aggattaatgtgagtggaattttgtctttaaccatttaagcgatcattcc
atgacataataacacttaaagagaatcatctgtggaatacaatcacagtc
tttgagtgatgactgatacactaactcaaaatgagaagaaaactgtgtct
atcccaggtatcaactacccacacattaaaaattaaaaaaaatgtataaa
gcagttaatgtgaacatattatcaaggggggaggggtgaaaacaaaacaa
acaaacaaacaaaaaagatcattccatgctccagacaggaggcagtgcac
tcattctgatcaggaaaggcttatgagagatggagcatgattgctgatgt
gcttgctaaaaatctcacaaatgaaccatgactttgctattatttggact
tcaaaaggggaggcattggttttgcaaaaaatactcaggagttaaagctt
ttccttataaaacttgcaagaatgcaacagccttgcatgtgttaagctaa
aactcaaacatacacactgagagaaagggagaggcagaccacgaaaggca
gatttgagtggcactagcttgctgacacagatgagagaaaatgctgagaa
gactcgggacatactgtatcaacagaagatgctctatgcttcctgtcagc
aactcagctcatttaaatgaggaaactcggtctgtgtaaagtagcgtttt
ctatactgttggtttaaaggaaaatataaaagaaaccctatgcgcatcag
ctgaccctgcagggagataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_26573577_26574638
seq2: B6Ng01-047M19.b_47_1099

seq1  GAATTCATTGTTTTTAATGGCTGAGTAGTACTCCATTGTGTAAATATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTTTAATGGCTGAGTAGTACTCCATTGTGTAAATATACC  50

seq1  ACAACTTCTCTATTCATTTCTCTGTTGAGGGACATCTGGGTTTTACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTCTCTATTCATTTCTCTGTTGAGGGACATCTGGGTTTTACTGGA  100

seq1  AGATCCAGCAACTCCTCTCCTGGGTATATACCCAGAAGATGTCCCAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGCAACTCCTCTCCTGGGTATATACCCAGAAGATGTCCCAACTT  150

seq1  GTAATAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA  200

seq1  GCCAGAAGCTGGAAAGAACACAAACCGTTTTCCATATTGAGCAAAATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAGCTGGAAAGAACACAAACCGTTTTCCATATTGAGCAAAATTCT  250

seq1  GGCACAGATCAAACAATTCACACTACTTGCTATTATAGTAACAAAGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGATCAAACAATTCACACTACTTGCTATTATAGTAACAAAGTGAT  300

seq1  GTTTTGCTTCTTCTTCCAATGTCCAGTCAAGCACACTTGCCCAGCCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTTCTTCTTCCAATGTCCAGTCAAGCACACTTGCCCAGCCTTTA  350

seq1  TCTCCACTGCCCTTCATGTTATTTCCAGCTAATGTCAAAAGATCCACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACTGCCCTTCATGTTATTTCCAGCTAATGTCAAAAGATCCACCAT  400

seq1  GAATAATTCTTCCCATCTCCCCAGGATATGAGAAACTAGCTTTCACTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTCTTCCCATCTCCCCAGGATATGAGAAACTAGCTTTCACTGGG  450

seq1  CTTAGCCAGAGTACCATACTAACATTCCCACATTTCATACCAATCCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCAGAGTACCATACTAACATTCCCACATTTCATACCAATCCTGTT  500

seq1  GCATCTCCTAGATTTATATGTCAGATAGTGATTGTATGAACTAATACGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCCTAGATTTATATGTCAGATAGTGATTGTATGAACTAATACGCT  550

seq1  TCCCTTCTCTCTGTTGAGCCACAGACTTTTCCCATACCTCCATTCACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTCTCTGTTGAGCCACAGACTTTTCCCATACCTCCATTCACTTT  600

seq1  TGAGATGTGACTTGTTAAATATCCAAGGCTGGGTCCAAAGTCACTTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTGACTTGTTAAATATCCAAGGCTGGGTCCAAAGTCACTTCACT  650

seq1  CGGGCCAGCTCTGAGCTTGCAATTCTCCTGTCTCGGGTTCGGGAAGATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCAGCTCTGAGCTTGCAATTCTCCTGTCTCGGGTTCGGGAAGATTG  700

seq1  AGATAAAATTAATGCTGCCACATTCCTGGAAACACAATCCCACCTCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAATTAATGCTGCCACATTCCTGGAAACACAATCCCACCTCTCTG  750

seq1  CCCAATCCAAGCTATTGTTACCTGTTTCTCTTCTCGATCTTTTCTGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCCAAGCTATTGTTACCTGTTTCTCTTCTCGATCTTTTCTGAACA  800

seq1  GAGGCCATTTTCCTTGCTCAGCATACCAAGTGTACCAAGGGCACTTGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATTTTCCTTGCTCAGCATACCAAGTGTACCAAGGGCACTTGATT  850

seq1  GAGCTCTCTTGCATGTTATTGTGTCATGAAGGGAGTGTGACCTTCTGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTCTTGCATGTTATTGTGTCATGAAGGGAGTGTGACCTTCTGCAG  900

seq1  CTCTTGAAGTGGGAGTTTAGTGTTGGTTTCAACACTAACAGGCTGTGTAA  950
      ||||   ||||||||||||||| ||||||| ||||| ||| ||||||| |
seq2  CTCT--GAGTGGGAGTTTAGTG-TGGTTTC-ACACT-ACA-GCTGTGT-A  943

seq1  CATTCTGTAAATCATTTTCTGTGATTCAATTCTCTCCTCACTACAAGCAG  1000
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  CATTCTGTAAATCATTTTCTGTGATTCAA-TCTCT-CTCACTACAAGCAG  991

seq1  GAGAAATCACCGCCGCCTTTGAACAACATAAAGTAAAACAGATTATGGTT  1050
      ||| |||||||||||||||||||||||||||||||||||||| || ||||
seq2  GAG-AATCACCGCCGCCTTTGAACAACATAAAGTAAAACAGAATAAGGTT  1040

seq1  TT-TGTTTTTGTT  1062
      || | | ||||||
seq2  TTGTTTGTTTGTT  1053

seq1: chr16_26712604_26713686
seq2: B6Ng01-047M19.g_69_1139 (reverse)

seq1  TCTATCTCACTGCAAGTGTCAGGCTGATGCGCATTAGGGTTTCTTTTTAT  50
      |||||||| |||| || |||| ||||||||||| ||||||||| ||||||
seq2  TCTATCTCCCTGC-AGGGTCA-GCTGATGCGCA-TAGGGTTTC-TTTTAT  46

seq1  ATTTTCTTTTAAAACAGACAGTATAGAAAACGCTACTTTACACAGACCGA  100
      |||||| |||||| || |||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTTAAACCA-ACAGTATAGAAAACGCTACTTTACACAGACCGA  95

seq1  GGTTTCCTCATTTTAAATGGAGCTGAGTTGCTGAACAGGAAGCATAGAGC  150
       ||||||||| ||||||| |||||||||||||| ||||||||||||||||
seq2  -GTTTCCTCA-TTTAAAT-GAGCTGAGTTGCTG-ACAGGAAGCATAGAGC  141

seq1  ATCTTCCTGTTGATACAGTATGTCCCGAGTTCTTTCTCAGCATTTTCTCT  200
      ||||| ||||||||||||||||||||||||   |||||||||||||||||
seq2  ATCTT-CTGTTGATACAGTATGTCCCGAGT--CTTCTCAGCATTTTCTCT  188

seq1  CATCTGTGTCAGCAAGCTAGTGCCACTCAAATCTGCCTTTCGTGGTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGTCAGCAAGCTAGTGCCACTCAAATCTGCCTTTCGTGGTCTGC  238

seq1  CTCTCCCTTTCTCTCAGTGTGTATGTTTGAGTTTTAGCTTAACACATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTTTCTCTCAGTGTGTATGTTTGAGTTTTAGCTTAACACATGCA  288

seq1  AGGCTGTTGCATTCTTGCAAGTTTTATAAGGAAAAGCTTTAACTCCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTGCATTCTTGCAAGTTTTATAAGGAAAAGCTTTAACTCCTGAG  338

seq1  TATTTTTTGCAAAACCAATGCCTCCCCTTTTGAAGTCCAAATAATAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGCAAAACCAATGCCTCCCCTTTTGAAGTCCAAATAATAGCAA  388

seq1  AGTCATGGTTCATTTGTGAGATTTTTAGCAAGCACATCAGCAATCATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGGTTCATTTGTGAGATTTTTAGCAAGCACATCAGCAATCATGCT  438

seq1  CCATCTCTCATAAGCCTTTCCTGATCAGAATGAGTGCACTGCCTCCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCATAAGCCTTTCCTGATCAGAATGAGTGCACTGCCTCCTGTC  488

seq1  TGGAGCATGGAATGATCTTTTTTGTTTGTTTGTTTGTTTTGTTTTCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCATGGAATGATCTTTTTTGTTTGTTTGTTTGTTTTGTTTTCACCC  538

seq1  CTCCCCCCTTGATAATATGTTCACATTAACTGCTTTATACATTTTTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCCTTGATAATATGTTCACATTAACTGCTTTATACATTTTTTTTA  588

seq1  ATTTTTAATGTGTGGGTAGTTGATACCTGGGATAGACACAGTTTTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATGTGTGGGTAGTTGATACCTGGGATAGACACAGTTTTCTTCT  638

seq1  CATTTTGAGTTAGTGTATCAGTCATCACTCAAAGACTGTGATTGTATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAGTTAGTGTATCAGTCATCACTCAAAGACTGTGATTGTATTCC  688

seq1  ACAGATGATTCTCTTTAAGTGTTATTATGTCATGGAATGATCGCTTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGATTCTCTTTAAGTGTTATTATGTCATGGAATGATCGCTTAAAT  738

seq1  GGTTAAAGACAAAATTCCACTCACATTAATCCTTAATTTGCCCAACTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAGACAAAATTCCACTCACATTAATCCTTAATTTGCCCAACTCAT  788

seq1  CCATGTTCCTATTTATTCCTCCACAAAATGTATAATACCCTATCTACTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCCTATTTATTCCTCCACAAAATGTATAATACCCTATCTACTAT  838

seq1  GTGAACAGTGATGAGAAACTCTGCAGTATATATCTGGGTAAGACCTTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAGTGATGAGAAACTCTGCAGTATATATCTGGGTAAGACCTTCCT  888

seq1  CGGGGTTCTGACAGTCCTTTGAAGAATGCATAATTATTCTTGCATCTTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTTCTGACAGTCCTTTGAAGAATGCATAATTATTCTTGCATCTTGC  938

seq1  AGAGCGTATTCCCTTTATATCCTTTCTACTGCTCTTCCCGAGGCCACTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGTATTCCCTTTATATCCTTTCTACTGCTCTTCCCGAGGCCACTTT  988

seq1  GCCTTTGGACTTCTTTCTGTGCTTATACATGGTCAGCCACCAGTGGAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGACTTCTTTCTGTGCTTATACATGGTCAGCCACCAGTGGAAAT  1038

seq1  GCTTAGAGTAAACACCTACCCATCCCTGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  GCTTAGAGTAAACACCTACCCATCCCTGAATTC  1071