BAC Information

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BAC

Clone NameB6Ng01-048B17
Chromosome16 (Build37)4 (Build37)
Map Location 28,442,226 - 28,442,72958,637,396 - 58,638,544
singlet/doubletsingletsinglet
Overlap geneFgf12
Upstream geneCcdc50
Downstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048B17.bB6Ng01-048B17.g
ACCDH872769DH872770
length9601,104
definitionDH872769|Mus musculus domesticus DNA, BAC clone: B6Ng01-048B17, 5' end.DH872770|Mus musculus domesticus DNA, BAC clone: B6Ng01-048B17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,442,226 - 28,442,729)(58,637,396 - 58,638,544)
sequence
gaattcacagagactgtggcagcattcagagcctgcatggatctcagatg
gatgaagtcccagtgctgaggggagaagtgggcacaagtgccacccctta
tccacaagctatctccaactgacaatggctcacaatagaaaaaatatttt
tctccaacagagtctcacttggtataaaaacaacacttaagggcaggccc
catgcccaggagtaaatggccaacacaaaatgaactcaaggatactttta
gagagtttttgtctcattattcttttcttatcttgttgttggtggtgggc
ttttttgtttgttcattttgtttttactttacaggttattgcttatatac
tatggtttcccactttgtgtttttatgatctctctctctctctctccctc
cctccctccctccctccatgtgtgtgtgtgtgtgtgagtgtgtgtgtgtg
tgtgtgtgccagtgatcagactttctaggagagttctgctgaggcagtga
gtgtaaactagctatggagtgggaaaggccttggtggtggttctgatttt
cagggcagacacaacgagcatctctcagtctcttttcttagctcactgag
ttctagagcctcacaaacacatcacaaatctgagaatactcacactataa
aattctgctttcaaaagcacagaaacacaaaatgaacacatcgggaactg
gctaggaagcaagacatcatagggccgtagagcacactcatgcttcgagt
gagctgtctctccatcacaaaacttgatttgaagagatgagaaacacaag
gactatagacagcatgtggtttatctgtgatgttacacaactgaagatga
caaattgggactggaagcggattcaccccaccccttgcttgctctatttg
caggatgacataaaaaaaaaaaaaaagcaggagagtgggtgtctgctgtc
acctgatgga
gaattcactatttttttaaatcacagatctcatctggaattcaagatgaa
tcaatacatatgcattatttaacaaaaatgtatggaaaatataccaagaa
tgttgaatttaaagcagatgttctagaactaaaaaaatgcaaccaaagaa
aagtttaaattatacattaaaaaagtaaaagtttgctttgacaatacatt
gcattacttcatattttaggaggccattatgttgaaatatatatatatat
atatatattgttaaaggttaatcatgtatggaaaaggaatgaaagaaaaa
aatgggatagaaagaaaccaaaaaggctcttcacactttatgtcttgtat
tctgtgagatttcctgcttaataatttacaaccaggtgattggagaaatt
gctgatgaaaacaattagtacaaggtgactctcctttgtataattaagct
ccgagtcatggaatttaaattacacctgaagaaaccctgacaaagtgctt
cctaggcagtcgaaggtacccgctgttaacccttggtccacaatgtctgc
aggttttccatagtttggtcctgaatatttctagtcttagcaaacttcca
ctccctcttcatctgtatttcgttggtttggttcatcgctacacttgctc
tgatggaacaagacaaagttacagagaggaaatctacttcaagcatgcct
ataatccccacatgcctttggtggcttcagctctaggctacatgcatagc
acttcagctaatttcattccagtcagttcaggattcttctgtggaatgtg
gtcttcacgttacagcctctcaaagacaggaaggtattgatgggacccga
cggttatgtcttcagcgcaggacatctctagactgttcaaagtctggtgc
gaagagggttacaacacctatggctacagtgttcttttacttactgggct
tctgagcaagtcagagtgtcattacactgtaggctactgctaggtcttgc
atacgctgtgttctaaactgtgcttatccttaaagaatccttgatttact
ggaagctggacatgcagcaaacccatctccaaacttatggttgaaatact
caga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_28442226_28442729
seq2: B6Ng01-048B17.b_501_1002 (reverse)

seq1  TCCATCAGTTGACAGCAGACACCCACTTCTCCTGCTTTTTTTTTTTTTTT  50
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  TCCATCAGGTGACAGCAGACACCCAC-TCTCCTGCTTTTTTTTTTTTTTT  49

seq1  ATGTCATACTGCAAATAGAGCAAGCAAAGGGGTGGGGTGAATCCGCTTCC  100
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGTCATCCTGCAAATAGAGCAAGC-AAGGGGTGGGGTGAATCCGCTTCC  98

seq1  AGTCCCAATTTTGTCATCCTTCAGTTGTGTAACATCACAGATAAACCACA  150
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  AGTCCCAA-TTTGTCAT-CTTCAGTTGTGTAACATCACAGATAAACCACA  146

seq1  TGCTGTCTATAGTCCTTGTGTTTCTCATCTCTTCAAATCAAGTTTTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTATAGTCCTTGTGTTTCTCATCTCTTCAAATCAAGTTTTGTGA  196

seq1  TGGAGAGACAGCTCACTCGAAGCATGGGTGTGCTCTACGGCCCTATGATG  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGAGAGACAGCTCACTCGAAGCATGAGTGTGCTCTACGGCCCTATGATG  246

seq1  TCTTGCTTCCTGGCCAGTTCCCG-TGTGTTCATTTTGTGTTTCTGTGCTT  299
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  TCTTGCTTCCTAGCCAGTTCCCGATGTGTTCATTTTGTGTTTCTGTGCTT  296

seq1  TTGAAAGCAGAATTTTATAGTGTGAGTATTCTCAGATTTGTGATGTGTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCAGAATTTTATAGTGTGAGTATTCTCAGATTTGTGATGTGTTT  346

seq1  GTGAGGCTCTAGAACTCAGTGAGCTAAGAAAAGAGACTGAGAGATGCTCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCTCTAGAACTCAGTGAGCTAAGAAAAGAGACTGAGAGATGCTCG  396

seq1  TTGTGTCTGCCCTG-AAATCAGAACCACCACCAAGGCCTTTCCCACTCCA  448
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTGCCCTGAAAATCAGAACCACCACCAAGGCCTTTCCCACTCCA  446

seq1  TAGCTAGTTTACACTCACTGCCTCAGCAGAACTCTCCTAGAAAGTCTGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGTTTACACTCACTGCCTCAGCAGAACTCTCCTAGAAAGTCTGAT  496

seq1  CACTGG  504
      ||||||
seq2  CACTGG  502

seq1: chr4_58637396_58638544
seq2: B6Ng01-048B17.g_66_1169 (reverse)

seq1  TCTGAGTTATTTCAACCCCAATAAAGTATTTGAGAATTGGTGTTTTATGG  50
      |||||| ||||||||||   || |||| || ||||  ||| |||      
seq2  TCTGAG-TATTTCAACC---AT-AAGT-TTGGAGA--TGG-GTT------  35

seq1  CTTCTGCATTGTCAGCTATTTCCAGTATAAATTCTATGGATATTTTTAAG  100
       | ||||||   ||||   ||||||  |||||   | |||| | ||||||
seq2  -TGCTGCATGTCCAGC---TTCCAG--TAAAT--CAAGGAT-TCTTTAAG  76

seq1  TGATAAAGCACAAGGTTTAGAACACAGCGTATTGCAAGACCCTAGCAGTT  150
       ||| |||||||  ||||||||||||||||| ||||||| |||||||| |
seq2  -GAT-AAGCACA--GTTTAGAACACAGCGTA-TGCAAGA-CCTAGCAG-T  119

seq1  AGCCTACAGTTGTAATGACACCTCTGACCTTGCTTCAGAAGGCCCAGTAA  200
      ||||||||| |||||||||| |||||| ||||| |||||| |||||||||
seq2  AGCCTACAG-TGTAATGACA-CTCTGA-CTTGC-TCAGAA-GCCCAGTAA  164

seq1  GGTAAAAAGAACACTGTAAGCCATAGGTGTTTGGTTAACCCTCTTTCGGC  250
      |   ||||||||||||| |||||||||||||    ||||||||||   ||
seq2  G--TAAAAGAACACTGT-AGCCATAGGTGTT---GTAACCCTCTT--CGC  206

seq1  ACCAGACTTTGAACAGTCTAGAGATGT-CTGCGCTG-AGACATAACCTGT  298
      ||||||||||||||||||||||||||| |||||||| ||||||||||   
seq2  ACCAGACTTTGAACAGTCTAGAGATGTCCTGCGCTGAAGACATAACC--G  254

seq1  TGGGGTCCCATCAATACCCTTCCTGTCTTTGAGAGGCTGTAACGTGGAGA  348
      | |||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  TCGGGTCCCATCAATA-CCTTCCTGTCTTTGAGAGGCTGTAACGTGAAGA  303

seq1  CCACATTCCACAGAAGAATCCTGAACTGACTGGAATGAAATTAGCTGAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTCCACAGAAGAATCCTGAACTGACTGGAATGAAATTAGCTGAAG  353

seq1  TGCTATGCATGTAGCCTAGAGCTGAAGCCACCAAAGGCATGTGGGGATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGCATGTAGCCTAGAGCTGAAGCCACCAAAGGCATGTGGGGATTA  403

seq1  TAGGCATGCTTGAAGTAGATTTCCTCTCTGTAACTTTGTCTTGTTCCATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATGCTTGAAGTAGATTTCCTCTCTGTAACTTTGTCTTGTTCCATC  453

seq1  AGAGCAAGTGTAGCGATGAACCAAACCAACGAAATACAGATGAAGAGGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGTGTAGCGATGAACCAAACCAACGAAATACAGATGAAGAGGGA  503

seq1  GTGGAAGTTTGCTAAGACTAGAAATATTCAGGACCAAACTATGGAAAACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGTTTGCTAAGACTAGAAATATTCAGGACCAAACTATGGAAAACC  553

seq1  TGCAGACATTGTGGACCAAGGGTTAACAGCGGGTACCTTCGACTGCCTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACATTGTGGACCAAGGGTTAACAGCGGGTACCTTCGACTGCCTAG  603

seq1  GAAGCACTTTGTCAGGGTTTCTTCAGGTGTAATTTAAATTCCATGACTCG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACTTTGTCAGGGTTTCTTCAGGTGTAATTTAAATTCCATGACTCG  653

seq1  GAGCTTAATTATACAAAGGAGAGTCACCTTGTACTAATTGTTTTCATCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAATTATACAAAGGAGAGTCACCTTGTACTAATTGTTTTCATCAG  703

seq1  CAATTTCTCCAATCACCTGGTTGTAAATTATTAAGCAGGAAATCTCACAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTCCAATCACCTGGTTGTAAATTATTAAGCAGGAAATCTCACAG  753

seq1  AATACAAGACATAAAGTGTGAAGAGCCTTTTTGGTTTCTTTCTATCCCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGACATAAAGTGTGAAGAGCCTTTTTGGTTTCTTTCTATCCCAT  803

seq1  TTTTTTCTTTCATTCCTTTTCCATACATGATTAACCTTTAACAATATATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTCATTCCTTTTCCATACATGATTAACCTTTAACAATATATA  853

seq1  TATATATATATATATTTCAACATAATGGCCTCCTAAAATATGAAGTAATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATTTCAACATAATGGCCTCCTAAAATATGAAGTAATG  903

seq1  CAATGTATTGTCAAAGCAAACTTTTACTTTTTTAATGTATAATTTAAACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTATTGTCAAAGCAAACTTTTACTTTTTTAATGTATAATTTAAACT  953

seq1  TTTCTTTGGTTGCATTTTTTTAGTTCTAGAACATCTGCTTTAAATTCAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGGTTGCATTTTTTTAGTTCTAGAACATCTGCTTTAAATTCAAC  1003

seq1  ATTCTTGGTATATTTTCCATACATTTTTGTTAAATAATGCATATGTATTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGTATATTTTCCATACATTTTTGTTAAATAATGCATATGTATTG  1053

seq1  ATTCATCTTGAATTCCAGATGAGATCTGTGATTTAAAAAAATAGTGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTTGAATTCCAGATGAGATCTGTGATTTAAAAAAATAGTGAATT  1103

seq1  C  1149
      |
seq2  C  1104