BAC Information

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BAC

Clone NameB6Ng01-048B19
Chromosome16 (Build37)
Map Location 80,357,413 - 80,484,464
singlet/doubletdoublet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik
Downstream geneLOC621365, LOC100039724, Ncam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048B19.bB6Ng01-048B19.g
ACCDH872773DH872774
length1,0201,023
definitionDH872773|Mus musculus domesticus DNA, BAC clone: B6Ng01-048B19, 5' end.DH872774|Mus musculus domesticus DNA, BAC clone: B6Ng01-048B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,483,421 - 80,484,464)(80,357,413 - 80,358,471)
sequence
gaattcaaaggtcattctgctatctcatatctgaaaacaatccctggcag
tctcttcctagcctagaaaaaagtctccaagtctgcttatcggaacatta
tgccaattaaacatttccagttttactctattctcttcatcttatttaaa
tcaattagagcttacagtgctattcttctcctccaagctactttcttatt
caacactatttaaacaaaaagcctttctaaaccagaaggatgtcaataaa
ttaaatctataacccactataagttaaaacactgaaatgatttattcaat
ggttaaacaaaaatttaacttgcaatataaataattttttctgtaattgc
aaattcatttgattaaatgtagcattacataggtaatttcaatagtgaaa
aagataattttaatctaatttatctttctttcaaattattcactccctat
tttaaatattaccgtatattttgatatctgcactaagttttactaaagct
gtaattcaattttcagttcattgctctataacagaaaataataatttgat
atatctttagtttaattagaacagatagagggacatagataaaggaagta
gattaatcaaaaattatgagcctgtattatttaattttctcactatggtg
actaacacctgacatgaagcaatttgagggttttagggttcactttagct
gacagcaatatgatatggcttaaccgagtgaggagggcacatactcagcc
aggaagaaaagaataggcaaaaagtagaccctgccaatcaaatctcaaga
ccaacaccccccactctgtctctagtatctcaccatctcagtgaaacact
gctttcaagaggttccatagtcctctaaatcatttcacatttgtagcaat
atgcagcatattgaactcatcgagaaaatttcacatcagacagcagactg
tcacatcttcggagatgtgaacgtgagtctagtgtatacacatgctctac
atttctccttcttttttttt
gaattccatgaactgaattgcacagactgcatgaactgaatggaactgaa
aagaaatgaacaaactcagctgaactccactgcattcaacggaagtgcat
tgtactgcactggactcaactcaactgaatcctactgccttccctgaact
caacagaaatgcactcactgagatgtcctctggtctcctcacactgatct
ttagtagtctccctttcctgtgctcttctggggagagatgggctcatcct
atctctgactccttctgtcaaatctttctcagattcatcactttatctgt
ccctcaattaaatgacactgacaaacatgatgctaccttctacaaactaa
tcaattgggactgaatatgtgcactaaagacactgtctatattctagaca
gatcatatagacttagaaagtggttggatgtgatcccttgccagagcaga
acttttaatggattaaaattcttccacaccttttaaattaggtcaaagta
ataccggaagaaaattttaacaagcaacattaaagctaatatagtagaac
tggtaattagaatggcatttaaagatggaagataaagaacctgtgttaaa
atgaagaaactgtttatgtcctgaaaaacaattttctaggagttggccat
tatctctaatgttagaaaatggttagacttacttcaaatgagttgcaagg
gaatcagtaaaaaacaaaaacaaaaatacacatacaatgtaagagcattg
taagacaaaccctgtcagctatcaacagtgggacacaggatatttccatc
aaagaacaaagggaagatgctcaaagcagatccataaatgaaatcttcac
aacagtgggatctttaaggtctctatggtcagtgtcactacaggctttga
gacagctttagaaatagtttagaagtcgctagcacaacactgcttctgga
aatagtgatggaaaaggaaaataataatataatgcatacatacaatatgt
ggtgagataatagacatgtgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_80483421_80484464
seq2: B6Ng01-048B19.b_44_1063 (reverse)

seq1  AAAAAAAAAGAAAGAAAGAAAATGTAGGAGCATGTGGTATTTAACCACCT  50
      |||||||||||| ||    ||||||| |||||||||     ||  || ||
seq2  AAAAAAAAAGAAGGA---GAAATGTA-GAGCATGTG-----TATACA-CT  40

seq1  AGACTCACGGTTTCAACATCTTCCGGAAAGATGTGACAGTTCTGGCTTGT  100
      |||||||||  ||| ||||| ||||  |||||||||||| ||||   |||
seq2  AGACTCACG--TTC-ACATC-TCCG--AAGATGTGACAG-TCTG--CTGT  81

seq1  CTGGATGTGAAATTTTCTCGATGAGTTC-ATATGCTTGCATTATTTGCTT  149
      || ||||||||||||||||||||||||| |||||| |||||   |||| |
seq2  CT-GATGTGAAATTTTCTCGATGAGTTCAATATGC-TGCAT--ATTGC-T  126

seq1  ACAAATGTGGAATGATTTAGGAGGACTATGGAACCTCTTGAAAGCAGTGT  199
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  ACAAATGTGAAATGATTTA-GAGGACTATGGAACCTCTTGAAAGCAGTGT  175

seq1  TTCACTGAGATGGTGAGATACTAGAGACAGAGTGGGGGGTGTTGGTCTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGAGATGGTGAGATACTAGAGACAGAGTGGGGGGTGTTGGTCTTG  225

seq1  AGATTTGATTGGCAGGGTCTACTTTTTGCCTATTCTTTTCTTCCTGGCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGATTGGCAGGGTCTACTTTTTGCCTATTCTTTTCTTCCTGGCTG  275

seq1  AGTATGTGCCCTCCTCACTCGGTTAAGCCATATCATATTGCTGTCAGCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTGCCCTCCTCACTCGGTTAAGCCATATCATATTGCTGTCAGCTA  325

seq1  AAGTGAACCCTAAAACCCTCAAATTGCTTCATGTCAGGTGTTAGTCACCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAACCCTAAAACCCTCAAATTGCTTCATGTCAGGTGTTAGTCACCA  375

seq1  TAGTGAGAAAATTAAATAATACAGGCTCATAATTTTTGATTAATCTACTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGAAAATTAAATAATACAGGCTCATAATTTTTGATTAATCTACTT  425

seq1  CCTTTATCTATGTCCCTCTATCTGTTCTAATTAAACTAAAGATATATCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATCTATGTCCCTCTATCTGTTCTAATTAAACTAAAGATATATCAA  475

seq1  ATTATTATTTTCTGTTATAGAGCAATGAACTGAAAATTGAATTACAGCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTTTCTGTTATAGAGCAATGAACTGAAAATTGAATTACAGCTT  525

seq1  TAGTAAAACTTAGTGCAGATATCAAAATATACGGTAATATTTAAAATAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAACTTAGTGCAGATATCAAAATATACGGTAATATTTAAAATAGG  575

seq1  GAGTGAATAATTTGAAAGAAAGATAAATTAGATTAAAATTATCTTTTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAATAATTTGAAAGAAAGATAAATTAGATTAAAATTATCTTTTTCA  625

seq1  CTATTGAAATTACCTATGTAATGCTACATTTAATCAAATGAATTTGCAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAAATTACCTATGTAATGCTACATTTAATCAAATGAATTTGCAAT  675

seq1  TACAGAAAAAATTATTTATATTGCAAGTTAAATTTTTGTTTAACCATTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAAAATTATTTATATTGCAAGTTAAATTTTTGTTTAACCATTGA  725

seq1  ATAAATCATTTCAGTGTTTTAACTTATAGTGGGTTATAGATTTAATTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCATTTCAGTGTTTTAACTTATAGTGGGTTATAGATTTAATTTAT  775

seq1  TGACATCCTTCTGGTTTAGAAAGGCTTTTTGTTTAAATAGTGTTGAATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCTTCTGGTTTAGAAAGGCTTTTTGTTTAAATAGTGTTGAATAA  825

seq1  GAAAGTAGCTTGGAGGAGAAGAATAGCACTGTAAGCTCTAATTGATTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAGCTTGGAGGAGAAGAATAGCACTGTAAGCTCTAATTGATTTAA  875

seq1  ATAAGATGAAGAGAATAGAGTAAAACTGGAAATGTTTAATTGGCATAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGAAGAGAATAGAGTAAAACTGGAAATGTTTAATTGGCATAATG  925

seq1  TTCCGATAAGCAGACTTGGAGACTTTTTTCTAGGCTAGGAAGAGACTGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGATAAGCAGACTTGGAGACTTTTTTCTAGGCTAGGAAGAGACTGCC  975

seq1  AGGGATTGTTTTCAGATATGAGATAGCAGAATGACCTTTGAATTC  1044
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTGTTTTCAGATATGAGATAGCAGAATGACCTTTGAATTC  1020

seq1: chr16_80357413_80358471
seq2: B6Ng01-048B19.g_66_1088

seq1  GAATTCCATGAACTGAATTGCACAGACTGCATGAACTGAATGGAACTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAACTGAATTGCACAGACTGCATGAACTGAATGGAACTGAA  50

seq1  AAGAAATGAACAAACTCAGCTGAACTCCACTGCATTCAACGGAAGTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGAACAAACTCAGCTGAACTCCACTGCATTCAACGGAAGTGCAT  100

seq1  TGTACTGCACTGGACTCAACTCAACTGAATCCTACTGCCTTCCCTGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGCACTGGACTCAACTCAACTGAATCCTACTGCCTTCCCTGAACT  150

seq1  CAACAGAAATGCACTCACTGAGATGTCCTCTGGTCTCCTCACACTGATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAATGCACTCACTGAGATGTCCTCTGGTCTCCTCACACTGATCT  200

seq1  TTAGTAGTCTCCCTTTCCTGTGCTCTTCTGGGGAGAGATGGGCTCATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGTCTCCCTTTCCTGTGCTCTTCTGGGGAGAGATGGGCTCATCCT  250

seq1  ATCTCTGACTCCTTCTGTCAAATCTTTCTCAGATTCATCACTTTATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGACTCCTTCTGTCAAATCTTTCTCAGATTCATCACTTTATCTGT  300

seq1  CCCTCAATTAAATGACACTGACAAACATGATGCTACCTTCTACAAACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAATTAAATGACACTGACAAACATGATGCTACCTTCTACAAACTAA  350

seq1  TCAATTGGGACTGAATATGTGCACTAAAGACACTGTCTATATTCTAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGGGACTGAATATGTGCACTAAAGACACTGTCTATATTCTAGACA  400

seq1  GATCATATAGACTTAGAAAGTGGTTGGATGTGATCCCTTGCCAGAGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATATAGACTTAGAAAGTGGTTGGATGTGATCCCTTGCCAGAGCAGA  450

seq1  ACTTTTAATGGATTAAAATTCTTCCACACCTTTTAAATTAGGTCAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAATGGATTAAAATTCTTCCACACCTTTTAAATTAGGTCAAAGTA  500

seq1  ATACCGGAAGAAAATTTTAACAAGCAACATTAAAGCTAATATAGTAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGGAAGAAAATTTTAACAAGCAACATTAAAGCTAATATAGTAGAAC  550

seq1  TGGTAATTAGAATGGCATTTAAAGATGGAAGATAAAGAACCTGTGTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTAGAATGGCATTTAAAGATGGAAGATAAAGAACCTGTGTTAAA  600

seq1  ATGAAGAAACTGTTTATGTCCTGAAAAACAATTTTCTAGGAGTTGGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAACTGTTTATGTCCTGAAAAACAATTTTCTAGGAGTTGGCCAT  650

seq1  TATCTCTAATGTTAGAAAATGGTTAGACTTACTTCAAATGAGTTGCAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTAATGTTAGAAAATGGTTAGACTTACTTCAAATGAGTTGCAAGG  700

seq1  GAATCAGGTAAAAAAACAAAAAACAAAAATACACATACAATGTAAGAGCA  750
      |||||| ||||||||   ||||||||||||||||||||||||||||||||
seq2  GAATCA-GTAAAAAA--CAAAAACAAAAATACACATACAATGTAAGAGCA  747

seq1  TTGTAAGACAAACCCTGTCAGCTATCAACAGTTGGACACAGGATATTTCC  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGTAAGACAAACCCTGTCAGCTATCAACAGTGGGACACAGGATATTTCC  797

seq1  ATCAAAGAACAAAGGGAAGATTGCTCAAAGCAGATCCATAAATGAAATCT  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATCAAAGAACAAAGGGAAGA-TGCTCAAAGCAGATCCATAAATGAAATCT  846

seq1  TCACAACAGTGGGATCTTT-AGGTCTCTATGGTCAGTGTTCACCTACAAG  899
      ||||||||||||||||||| |||||||||||||||||| ||| |||||  
seq2  TCACAACAGTGGGATCTTTAAGGTCTCTATGGTCAGTG-TCA-CTACA--  892

seq1  GGCCTTTGAAGAACAGCTTTAGAAATAAGTTTAGAAAAGTCGCTAGCACA  949
       | ||||||   |||||||||||||| |||||||  ||||||||||||| 
seq2  -GGCTTTGA--GACAGCTTTAGAAAT-AGTTTAG--AAGTCGCTAGCAC-  935

seq1  AACACTGCTTTCTGGGAAAATAGTGAATTGAAAAAAGTATATATATATAT  999
      |||||||| ||||||  |||||||||  || |||| | | |||   ||| 
seq2  AACACTGC-TTCTGG--AAATAGTGA--TGGAAAAGGAAAATA---ATA-  976

seq1  ATATATATGCATACATACATATATATGTGTGTGTATGTATTTATAT-ATG  1048
      ||||| |||||||||||||   ||||||| |||         | || || 
seq2  ATATA-ATGCATACATACA---ATATGTG-GTG---------AGATAATA  1012

seq1  TACATGTGTAT  1059
       ||||||||||
seq2  GACATGTGTAT  1023