BAC Information

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BAC

Clone NameB6Ng01-048C10
Chromosome16 (Build37)9 (Build37)
Map Location 37,531,417 - 37,531,8614,295,723 - 4,295,896
singlet/doubletsingletsinglet
Overlap geneGtf2e1
Upstream geneCasr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l
Downstream geneRabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048C10.bB6Ng01-048C10.g
ACCDH872799DH872800
length905563
definitionDH872799|Mus musculus domesticus DNA, BAC clone: B6Ng01-048C10, 5' end.DH872800|Mus musculus domesticus DNA, BAC clone: B6Ng01-048C10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,531,417 - 37,531,861)(4,295,723 - 4,295,896)
sequence
gaattctttgtttaactctgtaccccatttttaatagcgttatttggttc
tctggagtctaacctcttgaattctttgtatatattgtatatcagccctc
tatcagatgtggggttagtaaatataatttcccaatgtgttgatgttttc
tactttgacattgtccttttccttacagaagctttgcaattttatgaggt
cccatttgttgattcttgatcttagagcataagtcattggttttctgttc
aggaaaatttcctactattattactttattctctttctttcctttttttg
gtttttcaagacagggtttctctgtatagttctggctgtcttggaactca
ctttgtagaccagacttctgcctcccaagattaaaggcctgcaccaccac
acctggctcccactttcttttctattagtttcagtgtatatggttttatg
tggaggtctttgatccacttggacttgagccttgtacagggagataaaat
ggattgatttacactcttctacatgctaactaacagttgaatcagcacca
tttgttgaaaatgctatcttttttccactggattgttttagtttctttgt
caaataccaagtgaccataggtatataggtcaatatctgggtcttcaatt
ttgttccattgatctacctgcctgtcactataccaagaccatgcagtttt
tatcacaattgctctgtagtgcagcttgaggtcaggatggtgattcctgc
agaagttcttttattgatgagatatttctgctatcctgggttttattcca
gatgatttgcaattgcccattctaactttgtgagattgagtggattttga
tggggatgcattaatgtgtagatgctttggcaaatgcattttactatata
tctgc
gaattcaaggctttagaatccagagaatcaaataaccctattaagatatg
gtgtccagaagtaaacaaagaattctcaataaagaaactatccatttaaa
aaaaaaaaatggcatggccctattggagtaggtatgtcactgtgggtgtg
gctataagaccctcctcctaactgcctggaagcaagtattctaatagtag
ccttcagatgaagatacgtaaccctcagcaattcctgtaccatccttacc
tgtatgttcctgccttggtgttaatggactgaacttctgaacctgtaagc
cagcctcaattaaatgctgtccttaaaagagttgccttggtcatggtgtc
tgttcacagcagtaaaacactaagacagcaacccacccaaaaaaaaaaaa
aaaaaaaaaaaaaacgttggccaaaactgtgtactgcctacaatatgctc
agggccaaagacagagcagagattgagggaatgcctaacagatgacttcc
ccaaattgggacgtatcccatagacaatccctgacaatatgaatggtttt
ctatcatacttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_37531417_37531861
seq2: B6Ng01-048C10.b_113_421 (reverse)

seq1  CTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCT  50
      |||||||||||||                           || |||||||
seq2  CTTGGGAGGCAGA---------------------------AGTCTGGTCT  23

seq1  ACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCG  100
      ||| ||||||||||| |||||||||  ||| ||||||||||||||||| |
seq2  ACAAAGTGAGTTCCAAGACAGCCAGAACTATACAGAGAAACCCTGTCTTG  73

seq1  AAAAAACCAACCAACCAACCAACCAACCAAACAAACAAACAAACAAACAA  150
      |||                     ||||||| |||  ||     | | | 
seq2  AAA---------------------AACCAAAAAAAGGAA-----AGAAAG  97

seq1  ACAAAAAAGATCTTATTACATATATGTATTCCTTTAAGAATTTCTAATAC  200
      | || ||||    || ||   |||          || ||| || |     
seq2  AGAATAAAG----TAATA---ATA---------GTAGGAAATTTT-----  126

seq1  CCCCATCTCAAAGTTTATTTAAAATGGGTTTTGGTGGTCTCTGCTAATCA  250
      ||  |    | ||       ||||                   | ||| |
seq2  CCTGA----ACAG-------AAAA-------------------CCAATGA  146

seq1  GTAATACTATTGTAATAATCAGGAATCAAGGCTTCCAACACATTTCTCAT  300
       | || || |    |  |||| ||||         ||||| ||    | |
seq2  CTTATGCTCT----AAGATCAAGAAT---------CAACAAATGGGACCT  183

seq1  TCTAACACTAGAGAATTTTATTCCACTTACAGTAAAACCACAGTGCCACA  350
        ||| | |  | |  ||       ||   || ||||  ||| || || |
seq2  CATAAAATTGCAAAGCTT-------CTGTAAGGAAAAGGACAATGTCAAA  226

seq1  TACACATTTTAGATGCCACAAAACTACATTCTATTAGCAATAATCTTAAT  400
               ||||    | | | | |||  |  |  | ||| || || | 
seq2  --------GTAGA----AAACATCAACA--CATTGGGAAATTATATTTAC  262

seq1  GAA---AAAAATTTAAGCAAGAATAAAATACAATATATACAAAAGAAT  445
       ||    | |  | |   | |  | | ||||||||||||| |||||||
seq2  TAACCCCACATCTGATAGAGGGCTGATATACAATATATAC-AAAGAAT  309

seq1: chr9_4295723_4295896
seq2: B6Ng01-048C10.g_223_390

seq1  AGACCCTCCTCCTAACCACTTGGGAGCCAGTCTTCTCCTACCTTCTTTTG  50
      ||||||||||||||||  | ||| ||| ||| ||||  ||    | ||  
seq2  AGACCCTCCTCCTAACTGCCTGGAAGCAAGTATTCTAATAGTAGCCTTCA  50

seq1  GAACAAGAGATACAACTCTCCGCTCCTTCTGGGCCATGACTGCCTAGACG  100
      ||  |||| |   ||| ||| ||   | |||  ||||     |||     
seq2  GATGAAGATACGTAACCCTCAGCAATTCCTGTACCAT-----CCT-----  90

seq1  CTACCATGT---TTCCAGGCATAATGATAATGGACTGAACCTCTGAACCT  147
       |||| |||   |||| | | |  || ||||||||||||| |||||||||
seq2  -TACC-TGTATGTTCCTGCCTTGGTGTTAATGGACTGAACTTCTGAACCT  138

seq1  GTAAGCCAGCCCCAATTAAA---TGTCCTT  174
      ||||||||||| ||||||||   |||||||
seq2  GTAAGCCAGCCTCAATTAAATGCTGTCCTT  168