BAC Information

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BAC

Clone NameB6Ng01-048H02
Chromosome16 (Build37)
Map Location 53,612,829 - 53,737,147
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048H02.bB6Ng01-048H02.g
ACCDH873001DH873002
length1,013892
definitionDH873001|Mus musculus domesticus DNA, BAC clone: B6Ng01-048H02, 5' end.DH873002|Mus musculus domesticus DNA, BAC clone: B6Ng01-048H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,736,097 - 53,737,147)(53,612,829 - 53,613,722)
sequence
gaattctcctgtctctgccactgcaatgctgggattacaaacacatgctg
tcacatagggttttggttttcatgttgcacctaaaacattttgattgttt
ttcaaattattttcttgggtataatctcagattattgatttaaagacaaa
atagaagcagacaaatgcttctcaaagtatttgaagttattatctaaaaa
ttacaacttccactaagaactcacaacttttaatgattcagagattcctc
agaatccatgcagttattactgtctttcatcagtaatcaccttaaatctt
tcacttcaaagttttcaaacaatatcagacagttgagatttaaccattat
gtgttttccttcacatccaggactagaaatcacatattaatttttatgtc
aagtccttatgtaaggataatataattgcttgatttattcagatacagtt
aactatacataaattttgcctaaatttaattttgaataagaaaattgaat
gctattactcgctatccatattcactatgttaggatgttaacattagtca
tgggaattaaaagagtttttaactttgcttaatggaatttatgccatcct
ttttgctttattatccaagaaaaatgttttgagatcttcatttattcact
tgtctgaggctttgccttatctttcactcaaagatctaatcaatcttgca
ccattttctttcctgatgtagaaattttgaaattcttttattgacaggag
tgtactgttgcaacgtgatattcattataagttgctactaactttagaca
cccagattcccagtatttgggaaccaagttaaacactatatgaaattgat
caaacttttaaatacagtgtagtgctgacaacatgattaaagcttatcat
acaaatattgagtgtgctttgaagccgatgtagctttgagttgactacat
gcagacagtctcttcgatcttacttccacttcgatgattgtagctcatcc
agcacatgcctgt
gaattctgtgagttatgtgaatcgcagtgtttgtagagaagtgacaaatg
atttgaaatcttcatcatctctttcatactgagagcccagcacttactgg
ctgttttctctggggttcagtcatctaatatatggccagtatatcagcgt
gctcttgaggatgagaactctgggtcactgaagtggcctttgccacggca
gataggcacagaaactcttctgtgtaacagaagtgtcaatgctggtctgt
tgttattgttcttactgttttaagagggataaaaggagttctggaaattc
aggcttcttacatctcttatgttcactatagagaaaaacttcaatttcag
aaaacaaaggaggtagctattaacagtagatgtgaaaatatgactgagat
attatacctcaaaaatgaattcactaaaataagtagaaataaaatgcatt
tatttcttcttatagttattgaacattactgaaagaaactcaggattttt
tattcttactcccttttaaaaggcaaaattattaaagacctaataagttt
caaattgtgtctctgggcacatctgcataaagtctattgtttgcctcact
atttcagtcattattttatatatgtacagagaatcatataagattttaaa
aagtatgaaaggaaaaattttacagaaagtttaaggtacccagttaaata
tttcccaaatactttgtacatatttttgcattatctgtgtgagtagatat
cataattttttctgtagaaatgaaataagatgtttatacacttatatgcc
tacggtttattagaataggttctcaaatctttcaccagtcgagcttgaat
tccaggtatcctttctgtctcagtgctgagattgtatacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_53736097_53737147
seq2: B6Ng01-048H02.b_42_1054 (reverse)

seq1  ACAGGCATGCTGCTGGAATAGTAGCTAACATATCATCTGAAAGTTGGAAG  50
      ||||||||| ||||||   |  |||| ||| |||||| |||   ||||||
seq2  ACAGGCATG-TGCTGG---ATGAGCT-ACA-ATCATC-GAA--GTGGAAG  41

seq1  TAGAGAAATAGAAAAGAGACTGGGCCTGGCATGTATGTTCAAAACCTCAA  100
      ||   | || |  ||||||||  | || |||||||   ||||   |||||
seq2  TA---AGATCG--AAGAGACT--GTCT-GCATGTA--GTCAA---CTCAA  78

seq1  AGCTTACATCTGCTTCCAAAAGCCACACCTTCAATATTTTGTAATGATAA  150
      ||| |||||| |||||  |||| |||||  |||||| ||||| |||||||
seq2  AGC-TACATCGGCTTC--AAAG-CACAC--TCAATA-TTTGT-ATGATAA  120

seq1  GCTTTAATCATGTTTGTCAGCAACTACACTTGTATTTAAAAGGTTTTGAT  200
      |||||||||||| |||||||| ||||||| ||||||||||||  ||||||
seq2  GCTTTAATCATG-TTGTCAGC-ACTACAC-TGTATTTAAAAG--TTTGAT  165

seq1  CAATTTCATTATTAGTGTTTAACTTGGTTCCCAAATACTTGGGATCTTGG  250
      |||||||||   ||||||||||||||||||||||||||| || ||| |||
seq2  CAATTTCAT--ATAGTGTTTAACTTGGTTCCCAAATACTGGGAATC-TGG  212

seq1  GTGTCTAAAGTTAGTAGCAACTTATAATGAATATCACGTTGCAACAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAAAGTTAGTAGCAACTTATAATGAATATCACGTTGCAACAGTAC  262

seq1  ACTCCTGTCAAT-AAAGAATTTCAAAATTTCCTACATCAGGAAAGAAAAT  349
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  ACTCCTGTCAATAAAAGAATTTCAAAATTT-CTACATCAGGAAAGAAAAT  311

seq1  GGTGCAAGATTGATTAGATCTTTGAGTGAAAGATAAGGCAAGGCCTCAGA  399
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGTGCAAGATTGATTAGATCTTTGAGTGAAAGATAAGGCAAAGCCTCAGA  361

seq1  CAAGTGAATAAATGAAGATCTCAAAACATTTTTCTTGGATAATAAAGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAATAAATGAAGATCTCAAAACATTTTTCTTGGATAATAAAGCAA  411

seq1  AAAGGATGGCATAAATTCCATTAAGCAAAGTTAAAAACTCTTTTAATTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGGCATAAATTCCATTAAGCAAAGTTAAAAACTCTTTTAATTCC  461

seq1  CATGACTAATGTTAACATCCTAACATAGTGAATATGGATAGCGAGTAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTAATGTTAACATCCTAACATAGTGAATATGGATAGCGAGTAATA  511

seq1  GCATTCAATTTTCTTATTCAAAATTAAATTTAGGCAAAATTTATGTATAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAATTTTCTTATTCAAAATTAAATTTAGGCAAAATTTATGTATAG  561

seq1  TTAACTGTATCTGAATAAATCAAGCAATTATATTATCCTTACATAAGGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTATCTGAATAAATCAAGCAATTATATTATCCTTACATAAGGAC  611

seq1  TTGACATAAAAATTAATATGTGATTTCTAGTCCTGGATGTGAAGGAAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATAAAAATTAATATGTGATTTCTAGTCCTGGATGTGAAGGAAAAC  661

seq1  ACATAATGGTTAAATCTCAACTGTCTGATATTGTTTGAAAACTTTGAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATGGTTAAATCTCAACTGTCTGATATTGTTTGAAAACTTTGAAGT  711

seq1  GAAAGATTTAAGGTGATTACTGATGAAAGACAGTAATAACTGCATGGATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTTAAGGTGATTACTGATGAAAGACAGTAATAACTGCATGGATT  761

seq1  CTGAGGAATCTCTGAATCATTAAAAGTTGTGAGTTCTTAGTGGAAGTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAATCTCTGAATCATTAAAAGTTGTGAGTTCTTAGTGGAAGTTGT  811

seq1  AATTTTTAGATAATAACTTCAAATACTTTGAGAAGCATTTGTCTGCTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAGATAATAACTTCAAATACTTTGAGAAGCATTTGTCTGCTTCT  861

seq1  ATTTTGTCTTTAAATCAATAATCTGAGATTATACCCAAGAAAATAATTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCTTTAAATCAATAATCTGAGATTATACCCAAGAAAATAATTTG  911

seq1  AAAAACAATCAAAATGTTTTAGGTGCAACATGAAAACCAAAACCCTATGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATCAAAATGTTTTAGGTGCAACATGAAAACCAAAACCCTATGT  961

seq1  GACAGCATGTGTTTGTAATCCCAGCATTGCAGTGGCAGAGACAGGAGAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCATGTGTTTGTAATCCCAGCATTGCAGTGGCAGAGACAGGAGAAT  1011

seq1  TC  1051
      ||
seq2  TC  1013

seq1: chr16_53612829_53613722
seq2: B6Ng01-048H02.g_66_957

seq1  GAATTCTGTGAGTTATGTGAATCGCAGTGTTTGTAGAGAAGTGACAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAGTTATGTGAATCGCAGTGTTTGTAGAGAAGTGACAAATG  50

seq1  ATTTGAAATCTTCATCATCTCTTTCATACTGAGAGCCCAGCACTTACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATCTTCATCATCTCTTTCATACTGAGAGCCCAGCACTTACTGG  100

seq1  CTGTTTTCTCTGGGGTTCAGTCATCTAATATATGGCCAGTATATCAGCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCTCTGGGGTTCAGTCATCTAATATATGGCCAGTATATCAGCGT  150

seq1  GCTCTTGAGGATGAGAACTCTGGGTCACTGAAGTGGCCTTTGCCACGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGAGGATGAGAACTCTGGGTCACTGAAGTGGCCTTTGCCACGGCA  200

seq1  GATAGGCACAGAAACTCTTCTGTGTAACAGAAGTGTCAATGCTGGTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGCACAGAAACTCTTCTGTGTAACAGAAGTGTCAATGCTGGTCTGT  250

seq1  TGTTATTGTTCTTACTGTTTTAAGAGGGATAAAAGGAGTTCTGGAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTGTTCTTACTGTTTTAAGAGGGATAAAAGGAGTTCTGGAAATTC  300

seq1  AGGCTTCTTACATCTCTTATGTTCACTATAGAGAAAAACTTCAATTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTTACATCTCTTATGTTCACTATAGAGAAAAACTTCAATTTCAG  350

seq1  AAAACAAAGGAGGTAGCTATTAACAGTAGATGTGAAAATATGACTGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGGAGGTAGCTATTAACAGTAGATGTGAAAATATGACTGAGAT  400

seq1  ATTATACCTCAAAAATGAATTCACTAAAATAAGTAGAAATAAAATGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACCTCAAAAATGAATTCACTAAAATAAGTAGAAATAAAATGCATT  450

seq1  TATTTCTTCTTATAGTTATTGAACATTACTGAAAGAAACTCAGGATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTCTTATAGTTATTGAACATTACTGAAAGAAACTCAGGATTTTT  500

seq1  TATTCTTACTCCCTTTTAAAAGGCAAAATTATTAAAGACCTAATAAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTACTCCCTTTTAAAAGGCAAAATTATTAAAGACCTAATAAGTTT  550

seq1  CAAATTGTGTCTCTGGGCACATCTGCATAAAGTCTATTGTTTGCCTCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGTGTCTCTGGGCACATCTGCATAAAGTCTATTGTTTGCCTCACT  600

seq1  ATTTCAGTCATTATTTTATATATGTACAGAGAATCATATAAGATTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTCATTATTTTATATATGTACAGAGAATCATATAAGATTTTAAA  650

seq1  AAGTATGAAAGGAAAAATTTTACAGAAAGTTTAAGGTACCCAGTTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGAAAGGAAAAATTTTACAGAAAGTTTAAGGTACCCAGTTAAATA  700

seq1  TTTCCCAAATACTTTGTACATATTTTTGCATTATCTGTGTGAGTAGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAATACTTTGTACATATTTTTGCATTATCTGTGTGAGTAGATAT  750

seq1  CATAA-TTTTTCTGTAGAAATGAAATAAGATGTTTATACACTTATATGCC  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTTTCTGTAGAAATGAAATAAGATGTTTATACACTTATATGCC  800

seq1  TACGGTTTATTAGAATAAGTTCTCAAATCTTTCACCAGTCGAGCCTTGAA  849
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  TACGGTTTATTAGAATAGGTTCTCAAATCTTTCACCAGTCGAG-CTTGAA  849

seq1  TTCCAGGTATCCTTTCTGTCTCAGGTTGCTGAGATTGTATACATG  894
      ||||||||||||||||||||||||  |||||||||||||||||||
seq2  TTCCAGGTATCCTTTCTGTCTCAG--TGCTGAGATTGTATACATG  892