BAC Information

Click to search

BAC

Clone NameB6Ng01-049F12
Chromosome16 (Build37)
Map Location 59,943,600 - 59,944,657
singlet/doubletsinglet
Overlap geneEpha6
Upstream geneOlfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6
Downstream geneLOC100043804, EG668168, LOC668170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049F12.bB6Ng01-049F12.g
ACCDH873636DH873637
length1,0401,108
definitionDH873636|Mus musculus domesticus DNA, BAC clone: B6Ng01-049F12, 5' end.DH873637|Mus musculus domesticus DNA, BAC clone: B6Ng01-049F12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccaaacactgaggaaggtctctagagggagatagtcctggtta
gttagtctgctgaacccgggtgtgtctgtgtctcctgctgctcatcttcc
cccatgactgagtttcccccccccaggtttttatcattcatatatatata
tatatatatatatatatatatatatataaattatttattgattattgagt
ttcataccatgcatcccaaactcacttatcttttcttctccatatctact
tttggaacatctccctcctcacagaaggaacacacacacacacacacaca
cacacgcatagaaaaaccatcttgtggaagctatagtgtgtcatagtgtg
tccgacagcatacacgtttgttcacacaccttaacttacaaagttcattg
ccatttttcagtttaaaggccccaggcttcttctacagcattaataccag
attctccctggacccttctcagacatcctgttcttgccttgtgccatgga
gatcctgcacctttgtatctacaggactggccatttcacaccctttagca
gttcatagatgagttagatattgggatgcaccaattcaagagttggtcag
cccaccagctgtcccgcatctgtactaccagggggaactatccaggctac
ctcccccaatggtccagccagccaggggcagtgcctgctttcctgccctc
acacacttagggctagctcatctgtgccttcacaatcaggttagctaata
ttgtgctgcccagctgagatgcagaccgcactccatctccagagtgctac
agctattgagggacaaggctggttcttccaattgtctcaggtggtggttt
ttgtagtggtgatagggcatctcatgctctcagctcagttcactgaagcc
cctgcccacatgccagctctactatgcttgtcagtgcagtgcagtcagaa
taaattctagcatcacactgagtctagactcagcctgaacaaactgacga
agaagagatgtatttttgaggaaacaatgactgactacca
gaattctttattgtttctatttccatttcaagatcctcaatggctttgtt
caattccttcacctgtttggttgtgttttcctgtaattctttaagggatt
tttgtgtttcctctttaagggcttctacctgtttacctatgttctcctgt
atttctttaagggagttatttatgtccttcttaaagtcctctatcatcat
catgagaagtgattttaatgagagtcttgctttttcggtgtgttagggta
tccaggacttgctgtggtgggagaactgggttctaatgatgcccagtagc
cttggtttctgttgcttattttcttgtgcttgcctttcaacatctggtta
tctctggtgttatgtggtcttattgtctctgactgtggcttgttcttcct
gtaagcctgtgtatcagcactcctgggagaccagttctctctgggaagaa
tttgggtatggagagctgtggcacagggtcagctcccgggcacagataga
atctgaaagggtcctgtccctggctgttccttggttcctgtgtcctgatg
gctctgggcaagtccctcttgggccaggaatttgagcataaatggtgttc
tcacctgtgttctcacgtgtgtcagcactattgggagaccagctctctcc
tgacaagatctaggtatggagagctgtgctctcagatgtgtcagccctcc
tgggagacctgctctctccaggcaggatctgggtacagagagctgtggca
tagggtcagctccagagctcagattgaaaccagaggtgtatctttcttta
ggtatatgttttaaaatatattagttttacattgcatcatactgtacagt
atatgttattctcaatacatatttttgctctataactcatctgtgattag
acaaaaaaaaaaaaccttaatgagtacaagtgataatcactgaataaatc
tcgatgtagtaacagcgtccatttaatggagccttatctgcagttggtac
ttactggagtgcgaacagtgaaactacatctttatctacgagtacctgcg
tacaccttaatctgtaggtcatctggataccatggaacgctctagacgtt
tccaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_59943600_59944657
seq2: B6Ng01-049F12.b_45_1084

seq1  GAATTCTCCAAACACTGAGGAAGGTCTCTAGAGGGAGATAGTCCTGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAACACTGAGGAAGGTCTCTAGAGGGAGATAGTCCTGGTTA  50

seq1  GTTAGTCTGCTGAACCCGGGTGTGTCTGTGTCTCCTGCTGCTCATCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTCTGCTGAACCCGGGTGTGTCTGTGTCTCCTGCTGCTCATCTTCC  100

seq1  CCCATGACTGAGTTTCCCCCCCCCAGGTTTTTATCATTCATATATATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGACTGAGTTTCCCCCCCCCAGGTTTTTATCATTCATATATATATA  150

seq1  TATATATATATATATATATATATATATAAATTATTTATTGATTATTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATAAATTATTTATTGATTATTGAGT  200

seq1  TTCATACCATGCATCCCAAACTCACTTATCTTTTCTTCTCCATATCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACCATGCATCCCAAACTCACTTATCTTTTCTTCTCCATATCTACT  250

seq1  TTTGGAACATCTCCCTCCTCACAGAAGGAACACACACACACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAACATCTCCCTCCTCACAGAAGGAACACACACACACACACACACA  300

seq1  CACACGCATAGAAAAACCATCTTGTGGAAGCTATAGTGTGTCATAGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCATAGAAAAACCATCTTGTGGAAGCTATAGTGTGTCATAGTGTG  350

seq1  TCCGACAGCATACACGTTTGTTCACACACCTTAACTTACAAAGTTCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGACAGCATACACGTTTGTTCACACACCTTAACTTACAAAGTTCATTG  400

seq1  CCATTTTTCAGTTTAAAGGCCCCAGGCTTCTTCTACAGCATTAATACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTCAGTTTAAAGGCCCCAGGCTTCTTCTACAGCATTAATACCAG  450

seq1  ATTCTCCCTGGACCCTTCTCAGACATCCTGTTCTTGCCTTGTGCCATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCCTGGACCCTTCTCAGACATCCTGTTCTTGCCTTGTGCCATGGA  500

seq1  GATCCTGCACCTTTGTATCTACAGGACTGGCCATTTCACACCCTTTAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGCACCTTTGTATCTACAGGACTGGCCATTTCACACCCTTTAGCA  550

seq1  GTTCATAGATGAGTTAGATATTGGGATGCACCAATTCAAGAGTTGGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGATGAGTTAGATATTGGGATGCACCAATTCAAGAGTTGGTCAG  600

seq1  CCCACCAGCTGTCCCGCATCTGTACTACCAGGGGGAACTATCCAGGCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAGCTGTCCCGCATCTGTACTACCAGGGGGAACTATCCAGGCTAC  650

seq1  CTCCCCCAATGGTCCAGCCAGCCAGGGGCAGTGCCTGCTTTCCTGCCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCAATGGTCCAGCCAGCCAGGGGCAGTGCCTGCTTTCCTGCCCTC  700

seq1  ACACACTTAGGGCTAGCTCATCTGTGCCTTCACAATCAGGGTTAGCT-AT  749
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  ACACACTTAGGGCTAGCTCATCTGTGCCTTCACAATCA-GGTTAGCTAAT  749

seq1  ATTGTGCTGCCCAGCTGAGATGCAGGACCGCACTCCATCTCCAGAGTGCT  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTGTGCTGCCCAGCTGAGATGCA-GACCGCACTCCATCTCCAGAGTGCT  798

seq1  ACAGCTATTGAGGGACAAGGCTGGTTCTTCCAATTGTCTCAGGTGGTGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATTGAGGGACAAGGCTGGTTCTTCCAATTGTCTCAGGTGGTGGT  848

seq1  TTTTGTAGTGGTGATAGGGCATCTCATGCTCTCAGCTCAGTTCACTGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGTGGTGATAGGGCATCTCATGCTCTCAGCTCAGTTCACTGAAG  898

seq1  CCCCTGCCCACCATGGCCAGCTCTACTATGCTGTCCAGGTGCAGTGCAGG  949
      |||||||||| ||| |||||||||||||||||   || ||||||||||| 
seq2  CCCCTGCCCA-CAT-GCCAGCTCTACTATGCTTGTCA-GTGCAGTGCAG-  944

seq1  GTTCAGAATAAATTCTTAAGCATCACACTGAGTCTAAGACTCAGCACTGA  999
        ||||||||||||||  ||||||||||||||||| ||||||||| ||||
seq2  --TCAGAATAAATTCT--AGCATCACACTGAGTCT-AGACTCAGC-CTGA  988

seq1  CACAAACAGGACAGAAGAAGAGAATGTATTTTTGAGGAAACAGATGAACT  1049
       ||||||  ||| ||||||||| ||||||||||||||||||| ||||   
seq2  -ACAAAC-TGAC-GAAGAAGAG-ATGTATTTTTGAGGAAACA-ATGA--C  1031

seq1  TGACTACCA  1058
      |||||||||
seq2  TGACTACCA  1040