BAC Information

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BAC

Clone NameB6Ng01-049H02
Chromosome16 (Build37)
Map Location 15,617,975 - 15,740,353
singlet/doubletdoublet
Overlap geneMcm4, Prkdc
Upstream geneSnai2, Efcab1, LOC100042737, LOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682
Downstream gene2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049H02.bB6Ng01-049H02.g
ACCDH873703DH873704
length1,024381
definitionDH873703|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H02, 5' end.DH873704|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,617,975 - 15,618,853)(15,739,968 - 15,740,353)
sequence
gaattcagagatccaacctaggggatggtgaatgagaattcctgaaaaga
ggctgtctctacagagacggactgactcattctgaagagacctgcatact
gcagtgtgctcccttctggatccagtattaggcacagaccacatccaaac
accaatttctaagcacacataaaacacaaagagatccttcattaagcaag
gcaaagagacaaaatggcttaatctgaatcaggcaggaacaacaaatagc
tctgtgggtgttaatttaaagagggaaagagggaggtctttgttaaattg
agctaggatgagttggcaggttctgattgggtattttaattacagtagtc
aaaataatgaattatgattgctggattctttttttttttttttttggttt
ttttttcgagacagggtttctctgtatagccctggctgtcctggaactca
ctctgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcct
cccgagtgctgggattaaaggcgtgcgccaccacacccggctgattgctg
gatcttgatgttttgatagttggaccttggtgatcagcccccaggaatga
gtttaggtataacgagtggccacacaagggaaatagacctttggaaaaac
attaagacatttaaaaatcatttaaaatgttgaagggggctgcaaatgtg
ttgagggcagggcaggttgaatcttctggtgggtttgaggcccacctggt
ctatatagtaagttccgaacagccaggctttgtggggaggggtccagaac
tttaccggatttcaccttccaagctcaactcttctctccccagttccatc
ctatattctctcaccccccacccataaacacctcacttttggacaattat
tatattatattacattatatgcttagttggtaagggtcttgccacccagc
tgagacaggagtttcactggagacttaatgacttcactgactctgcaaac
agcctcttgactttcattcagtca
ccacagaattgtctttagaattagggtccttatgggaaaatttttcaaat
attaacctgtaacacagcacaaaggagaaaaccaaaggttacacaatgaa
taagaaacaagaaaacgaatcattttctaaggcaaattttcagctatact
gtatatggaacacagcttttttctacttccaagatcctgcttattaatac
cacttgtcagttcttacctattctaattatttgtccaaatctggtcagtt
aatagtaattgttctgaaaatttcagcttgctccaggcaagtctaaagca
tcacactaagcctttggggggtggggaggggttgctggctcaggctgtgc
agggatctatactccaggtgcccagtgtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_15617975_15618853
seq2: B6Ng01-049H02.b_185_1062

seq1  AAACACCAATTTCTAAGCACACATAAAACACAAAGAGATCCTTCATTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCAATTTCTAAGCACACATAAAACACAAAGAGATCCTTCATTAAG  50

seq1  CAAGGCAAAGAGACAAAATGGCTTAATCTGAATCAGGCAGGAACAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAAAGAGACAAAATGGCTTAATCTGAATCAGGCAGGAACAACAAA  100

seq1  TAGCTCTGTGGGTGTTAATTTAAAGAGGGAAAGAGGGAGGTCTTTGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTGTGGGTGTTAATTTAAAGAGGGAAAGAGGGAGGTCTTTGTTAA  150

seq1  ATTGAGCTAGGATGAGTTGGCAGGTTCTGATTGGGTATTTTAATTACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCTAGGATGAGTTGGCAGGTTCTGATTGGGTATTTTAATTACAGT  200

seq1  AGTCAAAATAATGAATTATGATTGCTGGATTCTTTTTTTTTTTTTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAATAATGAATTATGATTGCTGGATTCTTTTTTTTTTTTTTTTTG  250

seq1  GTTTTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAA  300

seq1  CTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCT  350

seq1  GCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACACCCGGCTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACACCCGGCTGATT  400

seq1  GCTGGATCTTGATGTTTTGATAGTTGGACCTTGGTGATCAG-CCCCAGGA  449
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTGGATCTTGATGTTTTGATAGTTGGACCTTGGTGATCAGCCCCCAGGA  450

seq1  ATGAG-TTAGGTATAACGAGTGGCCACACAAGGG-AATAGACCTTT-GAA  496
      ||||| |||||||||||||||||||||||||||| ||||||||||| |||
seq2  ATGAGTTTAGGTATAACGAGTGGCCACACAAGGGAAATAGACCTTTGGAA  500

seq1  AAACATTAAGACATTTAAAAATCA-TTAAGATGTTGA--GGGGCTGCAGA  543
      |||||||||||||||||||||||| |||| |||||||  ||||||||| |
seq2  AAACATTAAGACATTTAAAAATCATTTAAAATGTTGAAGGGGGCTGCAAA  550

seq1  TGTGTTGAGGCCAGGGCAGG-TGAATC-TCT-GTGGGTTTGAGGCCAACC  590
      |||||||||| ||||||||| |||||| ||| |||||||||||||| |||
seq2  TGTGTTGAGGGCAGGGCAGGTTGAATCTTCTGGTGGGTTTGAGGCCCACC  600

seq1  TGGTCTATATAGTAAGTTCCAGAACAGCCAAGGCTATGTAGTGAAGGGCT  640
      |||||||||||||||||||| |||||||| ||||| ||| | | |||| |
seq2  TGGTCTATATAGTAAGTTCC-GAACAGCC-AGGCTTTGT-GGGGAGGGGT  647

seq1  CCAG-ACGTTACCAGATTTCACCTTCCAAAGCTCAACTCTTCTCTCCCCA  689
      |||| || ||||| ||||||||||||| ||||||||||||||||||||||
seq2  CCAGAACTTTACCGGATTTCACCTTCC-AAGCTCAACTCTTCTCTCCCCA  696

seq1  AGTCACCAATCTTATATTCTCTCACCCCCAACCCATAAACACCTCACTTT  739
        |   | ||| ||||||||||||||||| ||||||||||||||||||||
seq2  GTT---CCATCCTATATTCTCTCACCCCCCACCCATAAACACCTCACTTT  743

seq1  TGGACAATTATTATATTATATTACAATATATGCTTAGTTGGTAAGGGTCC  789
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  TGGACAATTATTATATTATATTACATTATATGCTTAGTTGGTAAGGGT-C  792

seq1  TTGCCACCCAGGCTGAAGACCAGAGTTTCACCTGAGACTTACATGACTTC  839
      |||||||||| |||| ||||  |||||||||  |||||||| ||||||||
seq2  TTGCCACCCA-GCTG-AGACAGGAGTTTCACTGGAGACTTA-ATGACTTC  839

seq1  ACTGACTTCTGCAAACAGCCCTCTGACTTTCATTCAGTCA  879
      |||||| |||||||||||||   |||||||||||||||||
seq2  ACTGAC-TCTGCAAACAGCCTCTTGACTTTCATTCAGTCA  878

seq1: chr16_15739968_15740353
seq2: B6Ng01-049H02.g_67_453 (reverse)

seq1  ATTACACTGGGCACCTGGAGTATAGATCCCTGCACTGCCTGAGCCAGCAA  50
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTACACTGGGCACCTGGAGTATAGATCCCTGCACAGCCTGAGCCAGCAA  50

seq1  CCCCTCCCCA-CCCCCAAAGGCTTAGTGTGATGCTTTAGACTTGCCTGGA  99
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCACCCCCCAAAGGCTTAGTGTGATGCTTTAGACTTGCCTGGA  100

seq1  GCAAGCTGAAATTTTCAGAACAATTACTATTAACTGACCAGATTTGGACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTGAAATTTTCAGAACAATTACTATTAACTGACCAGATTTGGACA  150

seq1  AATAATTAGAATAGGTAAGAACTGACAAGTGGTATTAATAAGCAGGATCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAGAATAGGTAAGAACTGACAAGTGGTATTAATAAGCAGGATCT  200

seq1  TGGAAGTAGAAAAAAGCTGTGTTCCATATACAGTATAGCTGAAAATTTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTAGAAAAAAGCTGTGTTCCATATACAGTATAGCTGAAAATTTGC  250

seq1  CTTAGAAAATGATTCGTTTTCTTGTTTCTTATTCATTGTGTAACCTTTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAAATGATTCGTTTTCTTGTTTCTTATTCATTGTGTAACCTTTGG  300

seq1  TTTTCTCCTTTGTGCTGTGTTACAGGTTAATATTTGAAAAATTTTCCCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCTTTGTGCTGTGTTACAGGTTAATATTTGAAAAATTTTCCCAT  350

seq1  AAGGACCCTAATTCTAAAGACAATTCTGTGGGAATTC  386
      |||||||||||||||||||||||||||||||||||||
seq2  AAGGACCCTAATTCTAAAGACAATTCTGTGGGAATTC  387