BAC Information

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BAC

Clone NameB6Ng01-049J14
Chromosome16 (Build37)
Map Location 65,064,702 - 65,065,830
singlet/doubletsinglet
Overlap geneHtr1f
Upstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, LOC668247
Downstream geneLOC672931, Pou1f1, Chmp2b, EG383186, Vgll3, LOC664846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049J14.bB6Ng01-049J14.g
ACCDH873815DH873816
length1,0821,218
definitionDH873815|Mus musculus domesticus DNA, BAC clone: B6Ng01-049J14, 5' end.DH873816|Mus musculus domesticus DNA, BAC clone: B6Ng01-049J14, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaaacaaagaggcccaaatccacgtatctgattgttctgggata
gctggaagggctgtggctgctgagacctcacagcataaagaacctttgaa
taaggaaatggattccagacactgaacccagccactgaagatagcaaaac
acagaagagatatttgctctgttcaccttgaatctggaaggatttgtagt
ttctgaagctttatttgcacatatcgattagcccaattagcacatgatag
gcttcatgacgatatgtttgtacatgcatataaagtattattattttttt
tatcacagtgaccctagtaacctctcctgtaaccttctcactttcagacc
attgccaggtgtccttctctactactgtacatcatcatcatcgtcgtcat
catcatcaccattatcaccatcctcatattattgttggttttttttttcc
ttttgagacaggaattccaagactagctggatagtgagcttacctctgtc
ccctggactctcctggttttgtcccctcatcctgggattacagctataca
ctgccacacttggtctttcacgtgggcatctggcttctcaacataggcat
gtatataaatagagcaagcatttactccctgagccatctcctgaaaccct
caaatctatctttcaaatagcacaattttattaatatgggttctgaattg
tgctgattgtgaaatagggttggcaaagatgcagcttgattcttgcagag
aggcaatgctattttgcctttatattgtgagggtttgtatgtgctctgct
tagtgtgtgcaccataaggaggtgtggtcttgttggagtagtgtgtcact
gtggggtgtgggctttaaatacctgtcctagctgctggaagctaatctcc
tcctagcagcttcagatgaagatgagaacctctcgcagctcctctgcaca
tgctgctgacactgcatgctctgctccgtgatattgactgaactctgact
ggagctacccataatggtctataagttgctgtatggtctgtccagaataa
agctataagacaattagctcaaccagaataca
gaattctccttaagagggacggggtttcgttttctctctctcttgcttct
tgcactctggctcctgaagatgtaagcaataaagctttgccgcagaagat
tctggtttgttgcgtctttcctggccggtcgtgagaacgcgtctaataac
aattggtgccgaattccgggacgagaaaaaactcgggactggcgcaagga
agatccctcattccagaaccagaactgcgggtcgcggtaataaaggttcc
cgtaaagcagactgttaagaaggattcaactgtatgaattcagaactttt
cagctggggaacgagagtaccagtgagtatagctttacgaggtaagcctg
gccttgaactttctaaggaaattcaagacagtctatcagaagtaaagtgg
aaaatgtttggccttgaattttttctagtgttagaagcccttttgttcct
tttcacatgttatcaagtggttaaggcagggcggattctagatgaaattc
aggacaagctatcagaagtaaagcggggagagagagtaggaacaaagagg
aaatatggtacacaaaataagtatacaggcctttccaagggtcttgaacc
cgaggaaaagttaaggttaggtaggaatacctggagagagattagaagaa
aaagaggaaaaagggaaaagaagaaagatcaattagcggaggtctctagg
aaaaggagcctgtgctcatcgctggatgggctcggggagccagctcttag
tagctctgaagcagatgaagaattctcctctgaagaaacagactgggagg
aagaagcagctcattatgagaaaaagggtaccagccaggtaaagtgctag
ctaatcagttaaggaagccaaaagcggctggcgaagccagtttgctgatt
ggcctcaggcagtcggcttcaagtccgccctatgcggagtccccgcctgc
gtagtgcgtcagcctgcgcagagagcagtgcgcagactcattcatcccag
agaggacatgaaaacaacagcatttctgtcttgaaggaccgaggtgggcg
tgtcaccctcggtaggaacttacaaattaagagctggccggtcgtcgtat
acgaacatgctatttttaacctgggtgcatgacaggctcccgcattgaca
ttatctggtactgaacgggtaagccctctccttattggccaatatgtagt
gagctttgtgcttggcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_65064702_65065830
seq2: B6Ng01-049J14.b_45_1126

seq1  GAATTCTAAACAAAGAGGCCCAAATCCACGTATCTGATTGTTCTGGGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACAAAGAGGCCCAAATCCACGTATCTGATTGTTCTGGGATA  50

seq1  GCTGGAAGGGCTGTGGCTGCTGAGACCTCACAGCATAAAGAACCTTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGGGCTGTGGCTGCTGAGACCTCACAGCATAAAGAACCTTTGAA  100

seq1  TAAGGAAATGGATTCCAGACACTGAACCCAGCCACTGAAGATAGCAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAATGGATTCCAGACACTGAACCCAGCCACTGAAGATAGCAAAAC  150

seq1  ACAGAAGAGATATTTGCTCTGTTCACCTTGAATCTGGAAGGATTTGTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAGATATTTGCTCTGTTCACCTTGAATCTGGAAGGATTTGTAGT  200

seq1  TTCTGAAGCTTTATTTGCACATATCGATTAGCCCAATTAGCACATGATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGCTTTATTTGCACATATCGATTAGCCCAATTAGCACATGATAG  250

seq1  GCTTCATGACGATATGTTTGTACATGCATATAAAGTATTATTATTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATGACGATATGTTTGTACATGCATATAAAGTATTATTATTTTTTT  300

seq1  TATCACAGTGACCCTAGTAACCTCTCCTGTAACCTTCTCACTTTCAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGTGACCCTAGTAACCTCTCCTGTAACCTTCTCACTTTCAGACC  350

seq1  ATTGCCAGGTGTCCTTCTCTACTACTGTACATCATCATCATCGTCGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAGGTGTCCTTCTCTACTACTGTACATCATCATCATCGTCGTCAT  400

seq1  CATCATCACCATTATCACCATCCTCATATTATTGTTGGTTTTTTTTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCACCATTATCACCATCCTCATATTATTGTTGGTTTTTTTTTTCC  450

seq1  TTTTGAGACAGGAATTCCAAGACTAGCTGGATAGTGAGCTTACCTCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGACAGGAATTCCAAGACTAGCTGGATAGTGAGCTTACCTCTGTC  500

seq1  CCCTGGACTCTCCTGGTTTTGTCCCCTCATCCTGGGATTACAGCTATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGACTCTCCTGGTTTTGTCCCCTCATCCTGGGATTACAGCTATACA  550

seq1  CTGCCACACTTGGTCTTTCACGTGGGCATCTGGCTTCTCAACATAGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACACTTGGTCTTTCACGTGGGCATCTGGCTTCTCAACATAGGCAT  600

seq1  GTATATAAATAGAGCAAGCATTTACTCCCTGAGCCATCTCCTGAAACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAAATAGAGCAAGCATTTACTCCCTGAGCCATCTCCTGAAACCCT  650

seq1  CAAATCTATCTTTCAAATAGCACAATTTTATTAATATGGGTTCTGAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTATCTTTCAAATAGCACAATTTTATTAATATGGGTTCTGAATTG  700

seq1  TGCTGATTGTGAAATAGGGTTGGCAAAGATGCAGCTTGATTCTTGCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATTGTGAAATAGGGTTGGCAAAGATGCAGCTTGATTCTTGCAGAG  750

seq1  AGGCAATGCTATTTTGCCTTTATTATTGTGAGGGTTTGTATGTGCTCTGC  800
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGCAATGCTATTTTGCCTTTA-TATTGTGAGGGTTTGTATGTGCTCTGC  799

seq1  TTAGTGTGTGGCACCATTAGGAGGTGTGGTCTTGTTGGAGTAGGTGTGTC  850
      ||||||||| ||||||| |||||||||||||||||||||||| |||||||
seq2  TTAGTGTGT-GCACCATAAGGAGGTGTGGTCTTGTTGGAGTA-GTGTGTC  847

seq1  ACTGT-GGGTGTGGGCTTTAATATACCTGTCCTAGCTGCCTGGAAGCTAA  899
      ||||| ||||||||||||||| |||||||||||||||| |||||||||||
seq2  ACTGTGGGGTGTGGGCTTTAA-ATACCTGTCCTAGCTG-CTGGAAGCTAA  895

seq1  TCTCCTCCTAGCAGCCTTCAGATGAAGATGTAGAACCCTCTCGCAGCTCC  949
      |||||||||||||| ||||||||||||||| |||| ||||||||||||||
seq2  TCTCCTCCTAGCAG-CTTCAGATGAAGATG-AGAA-CCTCTCGCAGCTCC  942

seq1  TCCTGCACCATGCCTGCCTGGACACTGCCATGCTCCTGCTTCGATGATAA  999
      | ||||| |||| ||||   ||||||| |||||| ||||| || |||| |
seq2  T-CTGCA-CATG-CTGC--TGACACTG-CATGCT-CTGCTCCG-TGAT-A  983

seq1  TGGACTGAACCTCTGAACCTGTAAGCTAACCCCAATTAAATGTTCTTTAT  1049
      | ||||||| ||||||  |||  |||||  ||||    |||| ||| || 
seq2  TTGACTGAA-CTCTGA--CTG-GAGCTA--CCCA---TAATGGTCTATA-  1023

seq1  AAGAGTTGCCTTGGTCATGGTGTCTGTTCACAGGAGTAAAACCCTAATTA  1099
         ||||||  |    |||  |||||| ||   || ||||   |||  ||
seq2  ---AGTTGCTGT----ATG--GTCTGTCCA---GAATAAA--GCTA--TA  1057

seq1  AGACAATTATAGCTTCAATCACAGAATACA  1129
      |||||||  |||| ||||   |||||||||
seq2  AGACAAT--TAGC-TCAA--CCAGAATACA  1082