BAC Information

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BAC

Clone NameB6Ng01-050C02
Chromosome16 (Build37)
Map Location 29,313,435 - 29,474,171
singlet/doubletdoublet
Overlap geneAtp13a5, Atp13a4
Upstream geneFgf12, 1600021P15Rik, EG666717, Hrasls
Downstream geneOpa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050C02.bB6Ng01-050C02.g
ACCDH874174DH874175
length1,1451,051
definitionDH874174|Mus musculus domesticus DNA, BAC clone: B6Ng01-050C02, 5' end.DH874175|Mus musculus domesticus DNA, BAC clone: B6Ng01-050C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,313,435 - 29,314,593)(29,473,114 - 29,474,171)
sequence
gaattctacaaaaattttactcatagtatgtgttttaagacctcatgctc
ttcttcaagacatagcctcttgcttagcttgccacaacatccctccagct
tcatttcatggtccagcttctagccttactatgttgtcttctgtctgtga
catgtttgggcacctttttcactcttgtgctttgacctggccatctctaa
gctcagaggtggcctccaacctgtgacaggtgtgcacctgctgatgcatg
cacacatccccaccaagcacacatctcccagtagcacagccatcttactc
ccatattccttacgtctttggctagatgctaaagctctctagagctaggg
atagccactcctgatgctctacaagcactgtgtacaacactggctttcgg
aggcagtttgctgggaaaaaaaatgaccaaagtgttgattaattattcaa
acaaaatgaactgaaacagggaacaatcagctaagcccactgatctacag
cctgtccaaactgaggccagaatctaggtatgggaggagggcttgatgca
ggattcattcctggttcctataggagagtggtgggaatcttggactctct
gacaacagcagccatccccctccagtacatactctcttctgccacctttc
cagaatcctgagtgcaggtataatacttccatagcctggattcctgaccc
ctggaagaagaggagaaatagtagtggcagcaatgtcaccattggccatt
gttcactcagcctttgtcatttcaagaagcagtaggtggatatgaatgag
attgctcatgtaagttccgcacaaggcacttctaagacatggaacgtccc
acacgttttttgcctgcagaggagattattggtgcagagactgtttcaaa
cataacacgggcacagaaagtattaaattgtagcagcaaaggaatcatga
taagattaccaccctgacatcctctgagccacagttgtttctcactggtg
acctcaaccgcttcctctgtaactgcctctggccctcagtttctcaactg
tataatgggaatgtaaggaaagccggtcctctgaagtcttcctagccgtg
catgcatcaagcctctaacccccaactggtaagttggaaccactt
gaattcataaggtgccatatctctgcataatcaaagcaacacaactcagg
gacttgcagttagtgggatgtatgattctgtatgttgagctttttctgag
aatcaaggacttttctgctcccattaaaataaatattcagccttaaagaa
ctcctggatatgaggagaaacaatcgatactgtatttccctgtcacttaa
aaaaaatcaactttcaagatatcttcatttcatttccttggacctatagt
gatgaggcacagagcagaggacatctgagttctgaaagtattgaagagag
ggtagataatattagaaaccaaaggtaccactgagggaaatatttaggtc
tcagggagtatagttcaatggaaacaacatgacccagtctactagtttgc
tcctgggacccctcccactccttagtgactttgaaacatatgagggtgtc
ttgtgacaagagatcctttggccctagaagtgcaaaagagaatatggaat
ataccttttctgtgaatgtgcaggagatgagttttctttcactgcggtga
ctgagcgatcaatctgtggtttctccctgtaggaggttaatatgtgggcc
taatgctattgatgttgaaatcacacctatttggaaactgctcatcaagg
aggtaatttcttcagtatttggcggggatgttggatagaaaatgatgact
ctgtggcctgaccagttggagatgctccttgttaataagtgactgtaatt
tacctgaccctttaagaggacgccaagcacactgtctggatgtgctatgt
gccctgtgtgcacattgcacaactgcaatgctgcgacactcagtgtcctc
ttcttatctggtgacttggataatgctggggtttctctttctaaaatact
atactgcttagctcattctaattccgtgaaactaaaatcacgtttgttaa
gaaggggatcatttctcctcattattaattagttacctcagcatccaaac
ctggaagaagaaacccccatttatttagctctttttatggtctcctcatc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_29313435_29314593
seq2: B6Ng01-050C02.b_42_1186

seq1  GAATTCTACAAAAATTTTACTCATAGTATGTGTTTTAAGACCTCATGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAAAAATTTTACTCATAGTATGTGTTTTAAGACCTCATGCTC  50

seq1  TTCTTCAAGACATAGCCTCTTGCTTAGCTTGCCACAACATCCCTCCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAAGACATAGCCTCTTGCTTAGCTTGCCACAACATCCCTCCAGCT  100

seq1  TCATTTCATGGTCCAGCTTCTAGCCTTACTATGTTGTCTTCTGTCTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCATGGTCCAGCTTCTAGCCTTACTATGTTGTCTTCTGTCTGTGA  150

seq1  CATGTTTGGGCACCTTTTTCACTCTTGTGCTTTGACCTGGCCATCTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGGGCACCTTTTTCACTCTTGTGCTTTGACCTGGCCATCTCTAA  200

seq1  GCTCAGAGGTGGCCTCCAACCTGTGACAGGTGTGCACCTGCTGATGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGGTGGCCTCCAACCTGTGACAGGTGTGCACCTGCTGATGCATG  250

seq1  CACACATCCCCACCAAGCACACATCTCCCAGTAGCACAGCCATCTTACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATCCCCACCAAGCACACATCTCCCAGTAGCACAGCCATCTTACTC  300

seq1  CCATATTCCTTACGTCTTTGGCTAGATGCTAAAGCTCTCTAGAGCTAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTCCTTACGTCTTTGGCTAGATGCTAAAGCTCTCTAGAGCTAGGG  350

seq1  ATAGCCACTCCTGATGCTCTACAAGCACTGTGTACAACACTGGCTTTCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCACTCCTGATGCTCTACAAGCACTGTGTACAACACTGGCTTTCGG  400

seq1  AGGCAGTTTGCTGGGAAAAAAAATGACCAAAGTGTTGATTAATTATTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTTTGCTGGGAAAAAAAATGACCAAAGTGTTGATTAATTATTCAA  450

seq1  ACAAAATGAACTGAAACAGGGAACAATCAGCTAAGCCCACTGATCTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGAACTGAAACAGGGAACAATCAGCTAAGCCCACTGATCTACAG  500

seq1  CCTGTCCAAACTGAGGCCAGAATCTAGGTATGGGAGGAGGGCTTGATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCAAACTGAGGCCAGAATCTAGGTATGGGAGGAGGGCTTGATGCA  550

seq1  GGATTCATTCCTGGTTCCTATAGGAGAGTGGTGGGAATCTTGGACTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCATTCCTGGTTCCTATAGGAGAGTGGTGGGAATCTTGGACTCTCT  600

seq1  GACAACAGCAGCCATCCCCCTCCAGTACATACTCTCTTCTGCCACCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAGCAGCCATCCCCCTCCAGTACATACTCTCTTCTGCCACCTTTC  650

seq1  CAGAATCCTGAGTGCAGGTATAATACTTCCATAGCCTGGATTCCTGACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCCTGAGTGCAGGTATAATACTTCCATAGCCTGGATTCCTGACCC  700

seq1  CTGGAAGAAGAGGAGAAATAGTAGTGGCAGCAATGTCACCATTGGCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAAGAGGAGAAATAGTAGTGGCAGCAATGTCACCATTGGCCATT  750

seq1  GTTCACTCAGCCTTTGTCATTTCAAGAAGCAGTAGGTGGATATGAATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTCAGCCTTTGTCATTTCAAGAAGCAGTAGGTGGATATGAATGAG  800

seq1  ATTGCTCATGTAAGTTCCGCACAAGGCACTTCTAAGACATGGAACGTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCATGTAAGTTCCGCACAAGGCACTTCTAAGACATGGAACGTCCC  850

seq1  ACACGTTTTTTGCCTGCAGAGGAGATTATTGGTGCAAGAGACTGTTTCAA  900
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  ACACGTTTTTTGCCTGCAGAGGAGATTATTGGTGC-AGAGACTGTTTC-A  898

seq1  AACATAACACGGGCACAGAAAGTATTAAATTGTAGCAGGCAAAGGAAATC  950
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  AACATAACACGGGCACAGAAAGTATTAAATTGTAGCA-GCAAAGG-AATC  946

seq1  ATGATAAGATTACCACCCTGACATCCTCTGAGCCAACAAGTTTGTTTTCT  1000
      |||||||||||||||||||||||||||||||||| |||   ||||||   
seq2  ATGATAAGATTACCACCCTGACATCCTCTGAGCC-ACA--GTTGTTT--C  991

seq1  TCACT-GTGACCTCAAACCGCCTTCCTCTGTAACTGCCTCTGG-CCTCAG  1048
      ||||| |||||||| ||||| |||||||||||||||||||||| ||||||
seq2  TCACTGGTGACCTC-AACCG-CTTCCTCTGTAACTGCCTCTGGCCCTCAG  1039

seq1  TTTCTCAGCTGTATAGTGGGAATGTTAGGAAAGCC-GTTCTCTGAGGTCC  1097
      ||||||| ||||||| ||||||||| ||||||||| || |||||| || |
seq2  TTTCTCAACTGTATAATGGGAATGTAAGGAAAGCCGGTCCTCTGAAGT-C  1088

seq1  TTCCTAGCTGTGCCATGCATCAAAGCCATCAACCCCCAACCTGGTAAGTT  1147
      |||||||| ||| |||||||| |||||   ||||||||| |||||||| |
seq2  TTCCTAGCCGTG-CATGCATC-AAGCCTCTAACCCCCAA-CTGGTAAG-T  1134

seq1  TGGAACCCACTT  1159
      ||||| ||||||
seq2  TGGAA-CCACTT  1145

seq1: chr16_29473114_29474171
seq2: B6Ng01-050C02.g_67_1117 (reverse)

seq1  AGATGAGTAGACCATAAAAA-AGCTAAATAAATGTGGTTTTCTCTTTCCA  49
      ||||||| |||||||||||| ||||||||||||| || |||||  |||||
seq2  AGATGAGGAGACCATAAAAAGAGCTAAATAAATGGGGGTTTCTTCTTCCA  50

seq1  GTTTTGAATGCTGAGGTAACT-ATATATATTGAGGAAGAAATTGATCCCC  98
      | |||| |||||||||||||| ||  ||| ||||| ||||| ||||||||
seq2  GGTTTGGATGCTGAGGTAACTAATTAATAATGAGG-AGAAA-TGATCCCC  98

seq1  TTTCTTAAACAAACGTGATTTTAGTTTCACGGAATTAGAATGAGCTAAGC  148
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  -TTCTT-AACAAACGTGATTTTAGTTTCACGGAATTAGAATGAGCTAAGC  146

seq1  AGTATAGTATTTTAAGAAAGGAGAAAACCCCAGCATTTATCCAAGTCACC  198
      ||||||||||||| ||||| ||| ||||||||||| ||||||||||||||
seq2  AGTATAGTATTTT-AGAAA-GAG-AAACCCCAGCA-TTATCCAAGTCACC  192

seq1  AGATAAGAAGAGGACACCTGAGTGTCGCAGCATTGCAGTTGTGCAATGTG  248
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGATAAGAAGAGGACA-CTGAGTGTCGCAGCATTGCAGTTGTGCAATGTG  241

seq1  CACACAGGGCACATAGCACATCCAGACAGTGTGCTTGGCGTCCTCTTAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGGCACATAGCACATCCAGACAGTGTGCTTGGCGTCCTCTTAAA  291

seq1  GGGTCAGGTAAATTACAGTCACTTATTAACAAGGAGCATCTCCAACTGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGGTAAATTACAGTCACTTATTAACAAGGAGCATCTCCAACTGGT  341

seq1  CAGGCCACAGAGTCATCATTTTCTATCCAACATCCCCGCCAAATACTGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCACAGAGTCATCATTTTCTATCCAACATCCCCGCCAAATACTGAA  391

seq1  GAAATTACCTCCTTGATGAGCAGTTTCCAAATAGGTGTGATTTCAACATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTACCTCCTTGATGAGCAGTTTCCAAATAGGTGTGATTTCAACATC  441

seq1  AATAGCATTAGGCCCACATATTAACCTCCTACAGGGAGAAACCACAGATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATTAGGCCCACATATTAACCTCCTACAGGGAGAAACCACAGATT  491

seq1  GATCGCTCAGTCACCGCAGTGAAAGAAAACTCATCTCCTGCACATTCACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGCTCAGTCACCGCAGTGAAAGAAAACTCATCTCCTGCACATTCACA  541

seq1  GAAAAGGTATATTCCATATTCTCTTTTGCACTTCTAGGGCCAAAGGATCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTATATTCCATATTCTCTTTTGCACTTCTAGGGCCAAAGGATCT  591

seq1  CTTGTCACAAGACACCCTCATATGTTTCAAAGTCACTAAGGAGTGGGAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCACAAGACACCCTCATATGTTTCAAAGTCACTAAGGAGTGGGAGG  641

seq1  GGTCCCAGGAGCAAACTAGTAGACTGGGTCATGTTGTTTCCATTGAACTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAGGAGCAAACTAGTAGACTGGGTCATGTTGTTTCCATTGAACTA  691

seq1  TACTCCCTGAGACCTAAATATTTCCCTCAGTGGTACCTTTGGTTTCTAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCTGAGACCTAAATATTTCCCTCAGTGGTACCTTTGGTTTCTAAT  741

seq1  ATTATCTACCCTCTCTTCAATACTTTCAGAACTCAGATGTCCTCTGCTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTACCCTCTCTTCAATACTTTCAGAACTCAGATGTCCTCTGCTCT  791

seq1  GTGCCTCATCACTATAGGTCCAAGGAAATGAAATGAAGATATCTTGAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCATCACTATAGGTCCAAGGAAATGAAATGAAGATATCTTGAAAG  841

seq1  TTGATTTTTTTTAAGTGACAGGGAAATACAGTATCGATTGTTTCTCCTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTTTTTAAGTGACAGGGAAATACAGTATCGATTGTTTCTCCTCA  891

seq1  TATCCAGGAGTTCTTTAAGGCTGAATATTTATTTTAATGGGAGCAGAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGGAGTTCTTTAAGGCTGAATATTTATTTTAATGGGAGCAGAAAA  941

seq1  GTCCTTGATTCTCAGAAAAAGCTCAACATACAGAATCATACATCCCACTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGATTCTCAGAAAAAGCTCAACATACAGAATCATACATCCCACTA  991

seq1  ACTGCAAGTCCCTGAGTTGTGTTGCTTTGATTATGCAGAGATATGGCACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAGTCCCTGAGTTGTGTTGCTTTGATTATGCAGAGATATGGCACC  1041

seq1  TTATGAATTC  1058
      ||||||||||
seq2  TTATGAATTC  1051