BAC Information

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BAC

Clone NameB6Ng01-052C14
Chromosome16 (Build37)
Map Location 71,071,136 - 71,208,349
singlet/doubletdoublet
Overlap genenone
Upstream geneEG664930, Gbe1, D16Ertd519e, LOC100039231
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052C14.bB6Ng01-052C14.g
ACCDH875598DH875599
length1,0881,164
definitionDH875598|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C14, 5' end.DH875599|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,207,252 - 71,208,349)(71,071,136 - 71,072,325)
sequence
gaattcttagtgtaagaagaatggaatggtttgaatggactaaaagttgc
gggtggttagggtctaggactagatgcttgcactttatttatctcttatt
caggaaggaaataaaaacacacatacactgaacaaaaatgaatacatttc
aatgaaactatattcagagagagagagagagagagagagagagagagaga
gaggcaccacagcagccgcatgaatgaaaatgatcaagaacccattattt
agggcttgcttttaggtgtttcaagataagaagggctttagtagccaagg
gcataatgtgagaggttcttcaccttgactgtcagattaagttatattaa
ccaccacttttatattttctgtgcccttttccataatgcatataatttga
atcatatgcatttctatttatacataagtgtaaaaggcaagaaggcattc
taagaatttatttgacatcttaattagggttactattgctatggtgaaac
accatgaccaaagagcaatttggggaggagagggtttgctttcttttcca
ttctttacgatagttcattataaatgaatccaggacaggaactcaaacaa
tgatgtagaatccatggaggcgttcaacacacaggcttgctcctcatggc
ttgctcagcatgatttcctatgttgcctatgaaaaaacagtccgggggta
gcattatccacaatcggccaagctgtcccacaccaatcattaattaaggg
catggtctacatgtttaactacagcctaatattgtggaggaactttctca
ggcaaagttccctccattcatatgacttgagcttgcttcaatttcacata
agctagtcaacacatgtggggatacatttaccatattgcacacacacatt
taaagaaaaagcagtctaggtcagattagcttatatttcatatctattcc
aaatgtgttgaaaataatgggcattattgaggtttggttgggaataatat
gcttgcatgcctaaacaggtttaacctgtcttgaatgtattggggttggt
gtctgggctacatataagttgttttaatatttctggga
gaattcattattttttaatttctccatctgctaaatcagagaatgataga
aagcacacaagcagcagctgcagaggagggatagaagaaaccacaaggga
tactgtgcatgtaagaagtctctgagaacttatagaggccaggaattcac
agatcatagttgaagaaaactatatctggcacaaaaaagccaccatgcac
tccttattgtaagtggggaattgcatatttggtgtcttatctgtgtagaa
gtggccccaaaagtgaatttagttgcaaaacaaaacaaaacacaatgcaa
aagagctaccactggaaacatgaaagggaaagacgttccaaatagaagaa
aattgttattttgtaataattttttttcagtaaattttagaatagaggat
aaggacatcctttctgtgcataagtgaagtgtggctcagttgtgacctct
tcagcatcatgatgctgtgtctggcagtagactctggaagcatctgtgtt
acaatggtgatgtagaaccagcacctctcaaaggcctgtaggattacctc
tgctttcaaaacaatctcccaactttaaatgagtcttattcttcctcata
tatttgttatgaattaccgtgagtagtaactaaatagttaataaaatatg
agtgtaatattttttaaaaatctcctttatttctctgtttaatacctttg
ctacattagtaggatatttgagagctgactttttttttaactttttgatt
agatattttctttatttacattttaaatgttatcccctttcttggtttta
catgctgaaaaccccctaacccctccccttgctcaccaacccacccactc
ccactttcctggccctgacattcccctatactggggcatagaaccttcac
aggaccaagggcctctcctcctattgatgaccgccaaggccatcctctca
tacatatgcagtaaagccatgagtcccaccagtgttttcttgagagctga
atttgacttgcaaccgcatcttccctaatggtgttttaatttagtcatgc
agatttgtgtgagtatgtgtgttgtacttgatcctctagaataattgatc
acttctttacacttcctgcactacctggctacattaaggtccactgactt
actgcagaatttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_71207252_71208349
seq2: B6Ng01-052C14.b_49_1136 (reverse)

seq1  TCCCAAAAATATCTAAAACAACTTTTA-CTAGCCCAG-GACTCACCCCAT  48
      ||||| |||||| ||||||||||| ||  ||||||||  ||  |||||| 
seq2  TCCCAGAAATAT-TAAAACAACTTATATGTAGCCCAGACACCAACCCCA-  48

seq1  ATACATTGCAGGGCAAG-TAAACCTGTTTTAAGCCATGCAAGCATATTAT  97
      ||||||| || | || | |||||||||||  || ||||||||||||||||
seq2  ATACATT-CAAGACAGGTTAAACCTGTTT--AGGCATGCAAGCATATTAT  95

seq1  TTCCAACCAAACCCTCAATAATGCCCATTTATTTTCAAACACATTTTGGA  147
      | ||||||||| ||||||||||||||| |||||||| |||||| ||||||
seq2  TCCCAACCAAA-CCTCAATAATGCCCA-TTATTTTC-AACACA-TTTGGA  141

seq1  ATAGAATATTGAAATTATAAGCTAATCTGACCTAGACTGCTTTTTCTTTA  197
      |||| ||| ||||| |||||||||||||||||||||||||||||||||||
seq2  ATAG-ATA-TGAAA-TATAAGCTAATCTGACCTAGACTGCTTTTTCTTTA  188

seq1  AATGTGTGTGTGCAATATGGTAAAATGTATCCCCACATGTGTTGACTAGC  247
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATGTGTGTGTGCAATATGGT-AAATGTATCCCCACATGTGTTGACTAGC  237

seq1  TTATGTGAAATTGAAGCAAGCTCAAGTCATATGAATGGAGGGAACTTTGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGAAATTGAAGCAAGCTCAAGTCATATGAATGGAGGGAACTTTGC  287

seq1  CTGAGAAAGTTCCTCCACAATATTAGGCTGTAGTTAAACATGTAGACCAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAGTTCCTCCACAATATTAGGCTGTAGTTAAACATGTAGACCAT  337

seq1  GCCCTTAATTAATGATTGGTGTGGGACAGCTTGGCCGATTGTGGATAATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTAATTAATGATTGGTGTGGGACAGCTTGGCCGATTGTGGATAATG  387

seq1  CTACCCCCGGACTGTTTTTTCATAGGCAACATAGGAAATCATGCTGAGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCCGGACTGTTTTTTCATAGGCAACATAGGAAATCATGCTGAGCA  437

seq1  AGCCATGAGGAGCAAGCCTGTGTGTTGAACGCCTCCATGGATTCTACATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGAGGAGCAAGCCTGTGTGTTGAACGCCTCCATGGATTCTACATC  487

seq1  ATTGTTTGAGTTCCTGTCCTGGATTCATTTATAATGAACTATCGTAAAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGAGTTCCTGTCCTGGATTCATTTATAATGAACTATCGTAAAGA  537

seq1  ATGGAAAAGAAAGCAAACCCTCTCCTCCCCAAATTGCTCTTTGGTCATGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAGAAAGCAAACCCTCTCCTCCCCAAATTGCTCTTTGGTCATGG  587

seq1  TGTTTCACCATAGCAATAGTAACCCTAATTAAGATGTCAAATAAATTCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCACCATAGCAATAGTAACCCTAATTAAGATGTCAAATAAATTCTT  637

seq1  AGAATGCCTTCTTGCCTTTTACACTTATGTATAAATAGAAATGCATATGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCCTTCTTGCCTTTTACACTTATGTATAAATAGAAATGCATATGA  687

seq1  TTCAAATTATATGCATTATGGAAAAGGGCACAGAAAATATAAAAGTGGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTATATGCATTATGGAAAAGGGCACAGAAAATATAAAAGTGGTG  737

seq1  GTTAATATAACTTAATCTGACAGTCAAGGTGAAGAACCTCTCACATTATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATAACTTAATCTGACAGTCAAGGTGAAGAACCTCTCACATTATG  787

seq1  CCCTTGGCTACTAAAGCCCTTCTTATCTTGAAACACCTAAAAGCAAGCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCTACTAAAGCCCTTCTTATCTTGAAACACCTAAAAGCAAGCCC  837

seq1  TAAATAATGGGTTCTTGATCATTTTCATTCATGCGGCTGCTGTGGTGCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATGGGTTCTTGATCATTTTCATTCATGCGGCTGCTGTGGTGCCT  887

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAATATAGTTTCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAATATAGTTTCAT  937

seq1  TGAAATGTATTCATTTTTGTTCAGTGTATGTGTGTTTTTATTTCCTTCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTATTCATTTTTGTTCAGTGTATGTGTGTTTTTATTTCCTTCCT  987

seq1  GAATAAGAGATAAATAAAGTGCAAGCATCTAGTCCTAGACCCTAACCACC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGAGATAAATAAAGTGCAAGCATCTAGTCCTAGACCCTAACCACC  1037

seq1  CGCAACTTTTAGTCCATTCAAACCATTCCATTCTTCTTACACTAAGAATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACTTTTAGTCCATTCAAACCATTCCATTCTTCTTACACTAAGAATT  1087

seq1  C  1098
      |
seq2  C  1088

seq1: chr16_71071136_71072325
seq2: B6Ng01-052C14.g_69_1232

seq1  GAATTCATTATTTTTTAATTTCTCCATCTGCTAAATCAGAGAATGATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATTTTTTAATTTCTCCATCTGCTAAATCAGAGAATGATAGA  50

seq1  AAGCACACAAGCAGCAGCTGCAGAGGAGGGATAGAAGAAACCACAAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACAAGCAGCAGCTGCAGAGGAGGGATAGAAGAAACCACAAGGGA  100

seq1  TACTGTGCATGTAAGAAGTCTCTGAGAACTTATAGAGGCCAGGAATTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGCATGTAAGAAGTCTCTGAGAACTTATAGAGGCCAGGAATTCAC  150

seq1  AGATCATAGTTGAAGAAAACTATATCTGGCACAAAAAAGCCACCATGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATAGTTGAAGAAAACTATATCTGGCACAAAAAAGCCACCATGCAC  200

seq1  TCCTTATTGTAAGTGGGGAATTGCATATTTGGTGTCTTATCTGTGTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATTGTAAGTGGGGAATTGCATATTTGGTGTCTTATCTGTGTAGAA  250

seq1  GTGGCCCCAAAAGTGAATTTAGTTGCAAAACAAAACAAAACACAATGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCCAAAAGTGAATTTAGTTGCAAAACAAAACAAAACACAATGCAA  300

seq1  AAGAGCTACCACTGGAAACATGAAAGGGAAAGACGTTCCAAATAGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTACCACTGGAAACATGAAAGGGAAAGACGTTCCAAATAGAAGAA  350

seq1  AATTGTTATTTTGTAATAATTTTTTTTCAGTAAATTTTAGAATAGAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTATTTTGTAATAATTTTTTTTCAGTAAATTTTAGAATAGAGGAT  400

seq1  AAGGACATCCTTTCTGTGCATAAGTGAAGTGTGGCTCAGTTGTGACCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATCCTTTCTGTGCATAAGTGAAGTGTGGCTCAGTTGTGACCTCT  450

seq1  TCAGCATCATGATGCTGTGTCTGGCAGTAGACTCTGGAAGCATCTGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATCATGATGCTGTGTCTGGCAGTAGACTCTGGAAGCATCTGTGTT  500

seq1  ACAATGGTGATGTAGAACCAGCACCTCTCAAAGGCCTGTAGGATTACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGTGATGTAGAACCAGCACCTCTCAAAGGCCTGTAGGATTACCTC  550

seq1  TGCTTTCAAAACAATCTCCCAACTTTAAATGAGTCTTATTCTTCCTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAAAACAATCTCCCAACTTTAAATGAGTCTTATTCTTCCTCATA  600

seq1  TATTTGTTATGAATTACCGTGAGTAGTAACTAAATAGTTAATAAAATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTATGAATTACCGTGAGTAGTAACTAAATAGTTAATAAAATATG  650

seq1  AGTGTAATATTTTTTAAAAATCTCCTTTATTTCTCTGTTTAATACCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAATATTTTTTAAAAATCTCCTTTATTTCTCTGTTTAATACCTTTG  700

seq1  CTACATTAGTAGGATATTTGAGAGCTGACTTTTTTTTTAACTTTTTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTAGTAGGATATTTGAGAGCTGACTTTTTTTTTAACTTTTTGATT  750

seq1  AGATATTTTCTTTATTTACATTTTAAATGTTATCCCCTTTCTTGGTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTCTTTATTTACATTTTAAATGTTATCCCCTTTCTTGGTTTTA  800

seq1  CATGCTGAAAACCCCCTAACCCCTCCCCTTGCTCACCAACCCACCCACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGAAAACCCCCTAACCCCTCCCCTTGCTCACCAACCCACCCACTC  850

seq1  CCAC-TTCCTGGCCCTGACATTCCCCTATACTGGGGCATAGAACCTTCAC  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCCTGGCCCTGACATTCCCCTATACTGGGGCATAGAACCTTCAC  900

seq1  AGGACCAAGGGCCTCTCCTCCTATTGATGACCGCCAAGGCCATCCTCTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAAGGGCCTCTCCTCCTATTGATGACCGCCAAGGCCATCCTCTCA  950

seq1  TACATATGCAGTTAAAGCCATGAGTCCCACCAGGTGTTTTCTTTGAGAGC  999
      ||||||||||| |||||||||||||||||||| |||||||| ||||||||
seq2  TACATATGCAG-TAAAGCCATGAGTCCCACCA-GTGTTTTC-TTGAGAGC  997

seq1  TGAAATTGACTTGCAAACGCATCTTTCCTAATGGTGTTTTAAATTTAGTC  1049
      |||| ||||||||||| |||||||| |||||||||||||| |||||||||
seq2  TGAATTTGACTTGCAACCGCATCTTCCCTAATGGTGTTTT-AATTTAGTC  1046

seq1  AATGCAGATATGTGTGAAGTATGTGTG-TGTACTTGTATACATCTAGAAT  1098
       |||||||| |||||| |||||||||| |||||||| || | ||||||| 
seq2  -ATGCAGATTTGTGTG-AGTATGTGTGTTGTACTTG-AT-CCTCTAGAA-  1091

seq1  TAATTGATCACCTTCTTTCACCACTTTCCCTGCACTTACCTGGTCTAAAC  1148
      |||||||||| |||||||   |||||  ||||||| ||||||| |||   
seq2  TAATTGATCA-CTTCTTT--ACACTT--CCTGCAC-TACCTGG-CTA---  1131

seq1  CATGTACATGTCTCCAACCTGACTTTACTGCAGAAATTTTGT  1190
      ||| || | |  ||||  ||||| |||||||||||  |||||
seq2  CAT-TA-AGG--TCCA--CTGAC-TTACTGCAGAA--TTTGT  1164