BAC Information

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BAC

Clone NameB6Ng01-052F11
Chromosome6 (Build37)16 (Build37)
Map Location 35,923,063 - 35,924,20916,851,751 - 16,851,927
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
Downstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052F11.bB6Ng01-052F11.g
ACCDH875725DH875726
length1,135913
definitionDH875725|Mus musculus domesticus DNA, BAC clone: B6Ng01-052F11, 5' end.DH875726|Mus musculus domesticus DNA, BAC clone: B6Ng01-052F11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,923,063 - 35,924,209)(16,851,751 - 16,851,927)
sequence
gaattctttgtaccttatgaagtcactgtttgtccatatcggatcagcat
catctgacatgctggctacaaactttcaacactcaagcattaagtcttac
tgtgttatgactctgaagagacaccacaaacaaggcaactcctggcaaag
gaagcatttaactgggtcggttaacagtttcagaggcttagttgttatca
tcatggcagggagcatggtggcatgccaccacagtgtcctatcaaatgtc
tatttgtcagcaagtgccactaagtgcatgtgccctgtgccggtgctcac
ttagtggtgtggcgcatttgttcatggatcctgagattttgcccattctg
ttgtcttcccatctccctactgaattccatcccatctttgtttcaccaaa
tagtaatgttaagagacagaaggaagaaatttgaacaattcatgagaaat
gtggcagattcatgacaactataaaaggaaatttgcacagctgagagtcc
tagcaaatagtgtgggtctcagagtaacaaaacaatccctgggccctaaa
gtgaggactgttgtgacaatggtactcccacagaggctgcctaccccacc
acaccagttaacaacacaacagaaactttccttccagtgtcctctataac
aggctgtctctccatatgaagtaaaggagaaattctttctgattctgaaa
gcaggtgaagaggagactagagtctaatttcatatgaagagtgaatatta
aatatttctctgaaagagagaattgctaagataatgaaatctgtcatctt
gaattttggagagaagcaattagatctaccagaaagatatgaacaatgtt
ggatacaagcctccttagcttgccaatgtctgaccctgtctctcttacaa
attcctatgttaatatcctagtgcactagatgatgaaatagaaagtgaga
ccttggaagtgattaggtcctagcatgatcaggtccagcacaatggagca
gagacttttattagaattctgagataataagaagaggccccagccgtctt
gctcagtacctcagccaacttcagtaaggagatcaattctttcacgaaga
agtaagttcccagcgaatgacagatctgaatcact
gaattcttgggagtcaggaagagataaggaagaggggactataattcagc
ttttagggtctctggtgccaggaagggatagggaggaggaggtgatgacc
ggctccttagcacaaggccatttggcttattagggtgggaagctatgaaa
gccctactttctcatggtatggtctccaacaggattggatatactgttct
ttgtcacatgatatgtccatatcaaaaacaaataaatgaatgaacaaaaa
aacaaaaacaaaacaaaaatccatatgtacagatcttttgcaaaaataca
aacaatatgaaatatcacagtattttccccaaaatctaccaatcctatag
aaatgttctttgctaatactgagatgaacctcaggacacagaacttgaaa
gagcaatcataaatttcataaaatatcccaaggagtttaaagtagacaca
aagaagcaactcaatgaatttaaagagaacacacatgaagagaacaccag
agtgatgcccaagtaaacacaaacttgaggctgattgaaacaacaaagac
aaatctagtaaagtcctgggtgcctgggacccaagaggttcccaggaccc
aacagagatgaccttagctgaaatatccaacaaaggggagatagaaccag
aagaaaacatatccagtggataggcacagccactggttgagagatgtggt
cacccatccatctcaaaaaatattaacatagaattgtccctgtctaaagg
gaattgcagggataaagagtggagcagagactgaaggaaattctgtccag
agactgctccatctaaggattcatcccatccgcagacacatactattgtg
gatgccaagaagtgcttgctgaaaagagccagatacagatgttccctgag
aagctgtgcaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35923063_35924209
seq2: B6Ng01-052F11.b_43_1177

seq1  GAATTCTTTGTACCTTATGAAGTCACTGTTTGTCCATATCGGATCAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTACCTTATGAAGTCACTGTTTGTCCATATCGGATCAGCAT  50

seq1  CATCTGACATGCTGGCTACAAACTTTCAACACTCAAGCATTAAGTCTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACATGCTGGCTACAAACTTTCAACACTCAAGCATTAAGTCTTAC  100

seq1  TGTGTTATGACTCTGAAGAGACACCACAAACAAGGCAACTCCTGGCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTATGACTCTGAAGAGACACCACAAACAAGGCAACTCCTGGCAAAG  150

seq1  GAAGCATTTAACTGGGTCGGTTAACAGTTTCAGAGGCTTAGTTGTTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTTAACTGGGTCGGTTAACAGTTTCAGAGGCTTAGTTGTTATCA  200

seq1  TCATGGCAGGGAGCATGGTGGCATGCCACCACAGTGTCCTATCAAATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCAGGGAGCATGGTGGCATGCCACCACAGTGTCCTATCAAATGTC  250

seq1  TATTTGTCAGCAAGTGCCACTAAGTGCATGTGCCCTGTGCCGGTGCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCAGCAAGTGCCACTAAGTGCATGTGCCCTGTGCCGGTGCTCAC  300

seq1  TTAGTGGTGTGGCGCATTTGTTCATGGATCCTGAGATTTTGCCCATTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGTGTGGCGCATTTGTTCATGGATCCTGAGATTTTGCCCATTCTG  350

seq1  TTGTCTTCCCATCTCCCTACTGAATTCCATCCCATCTTTGTTTCACCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCCCATCTCCCTACTGAATTCCATCCCATCTTTGTTTCACCAAA  400

seq1  TAGTAATGTTAAGAGACAGAAGGAAGAAATTTGAACAATTCATGAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATGTTAAGAGACAGAAGGAAGAAATTTGAACAATTCATGAGAAAT  450

seq1  GTGGCAGATTCATGACAACTATAAAAGGAAATTTGCACAGCTGAGAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGATTCATGACAACTATAAAAGGAAATTTGCACAGCTGAGAGTCC  500

seq1  TAGCAAATAGTGTGGGTCTCAGAGTAACAAAACAATCCCTGGGCCCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATAGTGTGGGTCTCAGAGTAACAAAACAATCCCTGGGCCCTAAA  550

seq1  GTGAGGACTGTTGTGACAATGGTACTCCCACAGAGGCTGCCTACCCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGACTGTTGTGACAATGGTACTCCCACAGAGGCTGCCTACCCCACC  600

seq1  ACACCAGTTAACAACACAACAGAAACTTTCCTTCCAGTGTCCTCTATAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGTTAACAACACAACAGAAACTTTCCTTCCAGTGTCCTCTATAAC  650

seq1  AGGCTGTCTCTCCATATGAAGTAAAGGAGAAATTCTTTCTGATTCTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTCTCTCCATATGAAGTAAAGGAGAAATTCTTTCTGATTCTGAAA  700

seq1  GCAGGTGAAGAGGAGACTAGAGTCTAATTTCATATGAAGAGTGAATATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGAAGAGGAGACTAGAGTCTAATTTCATATGAAGAGTGAATATTA  750

seq1  AATATTTCTCTGAAAGAGAGAATTGCTAAGATAATGAAATCTGTCATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCTCTGAAAGAGAGAATTGCTAAGATAATGAAATCTGTCATCTT  800

seq1  GAATTTTGGAGAGAAGCAATTAGATCTACCAGAAAGATATGAACAATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGGAGAGAAGCAATTAGATCTACCAGAAAGATATGAACAATGTT  850

seq1  GGATACAAGCCTCCTTAGCTTGCCAATGTCTGACCCTGTCTCTCTTACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAAGCCTCCTTAGCTTGCCAATGTCTGACCCTGTCTCTCTTACAA  900

seq1  ATTCCTATGTTAATATCCTAGTGCACTAGATGATGAAATAGAAAGTGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTATGTTAATATCCTAGTGCACTAGATGATGAAATAGAAAGTGAGA  950

seq1  CCTTGGAAGGTGATTAGGTCCTAGCATGATCAGGTCCAAGCACAATGGAA  1000
      |||||||| |||||||||||||||||||||||||||| |||||||||| |
seq2  CCTTGGAA-GTGATTAGGTCCTAGCATGATCAGGTCC-AGCACAATGG-A  997

seq1  GCAGAGACTTTTAATAGAATTCTGAAAAAAAAAAAAAAAAAAAAAAAAAG  1050
      ||||||||||||| ||||||||||          | | || || || | |
seq2  GCAGAGACTTTTATTAGAATTCTG----------AGATAATAAGAAGAGG  1037

seq1  CCCCAG-CGTCTTGCTCAGTACTCCAGCCAACTTCAGTAAGGAGATC-AT  1098
      |||||| |||||||||||||||  ||||||||||||||||||||||| ||
seq2  CCCCAGCCGTCTTGCTCAGTACCTCAGCCAACTTCAGTAAGGAGATCAAT  1087

seq1  TCTTCCACGAAGAAGTAAGTCCCCAGCAGATGACAGATCTGAAATCACT  1147
      |||| ||||||||||||||| ||||||  |||||||||||| |||||||
seq2  TCTTTCACGAAGAAGTAAGTTCCCAGCGAATGACAGATCTG-AATCACT  1135

seq1: chr16_16851751_16851927
seq2: B6Ng01-052F11.g_72_248

seq1  TCTTGGGAGTCAGGAAGAGATTAGGAAGAGGGGACTATAATTCAGCTTTT  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTTGGGAGTCAGGAAGAGATAAGGAAGAGGGGACTATAATTCAGCTTTT  50

seq1  AGGGTCTCTGGTGCCAGGAAGGGATAGGGGGGAGGAGGTGATGACTGGCT  100
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  AGGGTCTCTGGTGCCAGGAAGGGATAGGGAGGAGGAGGTGATGACCGGCT  100

seq1  CCTTAGCACAAGGCCATTTGGCTTATTAGGATGGGAAGCTGTGAAAGGCC  150
      |||||||||||||||||||||||||||||| ||||||||| |||||| ||
seq2  CCTTAGCACAAGGCCATTTGGCTTATTAGGGTGGGAAGCTATGAAAGCCC  150

seq1  TACTTTCTCATGGTATGGTCTCCAACA  177
      |||||||||||||||||||||||||||
seq2  TACTTTCTCATGGTATGGTCTCCAACA  177