BAC Information

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BAC

Clone NameB6Ng01-052J17
Chromosome16 (Build37)
Map Location 36,367,199 - 36,368,354
singlet/doubletsinglet
Overlap geneBC100530
Upstream genePdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854
Downstream geneLOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052J17.bB6Ng01-052J17.g
ACCDH875911DH875912
length1,2331,137
definitionDH875911|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J17, 5' end.DH875912|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgggtgagagcaaggatttaaggtaaacttcctttgagaagc
attagttagtaaaaaacactttccacttaggaaacaatatacactgaaag
attaaaactcttggcttcttgtatagaagcagaaacaataaaaatttctt
acataatgtaaagttacattagccatacctagaggcaaaattttctagta
attaccagttcactagaagcaaaactctttgaatttaagcattattctaa
acatctgaatagatctgcaacactgttaaaaagaaattttcttgaacaca
gggaaaaactttctcaggcactgtttgcaaaacaaaagaaaggccacaag
ctgctctggggctgcccagagccctgcattgactcaaacgtaaaatacct
tttaatctgagcatcttggccctcctgtaataaggaccgattctagagga
acaatataattgtctacgcctctaactttgatactctttcttaagatgac
ttacagttaaaacgttcttcacaactttagtgttgtgaaaaaattgccaa
tattgcagtttcctgccaggcagcaactatagccaaactgattgtttgag
ggtctaatctattcacaaagacaaacataactagataactttgtcacagt
tttgtatgaagtgagctgtattagtgctttcaaaagataattactcttat
aattatcttaattaacaatatatggtgagtagaaaatcttaaatttgcaa
tcaaactgcaagctgcagtcaatggaacaatggcagttttaaccataatt
tttaagttttcgttgcaatattagaatatatctataacttttggaaagca
aaacccaagtctaaaacaatttatcatctttaaaataatattagaagcat
tactatcatattacaagtttggctgccaattaatacctatgatacctatt
aaagcaagctttaatgctttataaagagcactgctttaaatctatcttaa
atttactattagatagaaccacatttattattatctaactagaaatatct
ttaaagacccagcttcttgcctgccttatgccacgtttcagagacctcta
acttgattatcaatttaacctaacatcgtgcatgtacaattattatttac
aaacttttaccgaagtgaaacacgtgcagcattccataaaggacaatgag
cgttcttgaccatcagagttaattttgtggcta
gaattctaatccagcctggtttacatgagagcctttctaaaaaaggaaaa
tcacaaggctttgtggggcacatcttttatcccagcacttggaggcaagg
acagggacttctctgtgagtttgaggctagcctaatcacagtgtgaggct
gaagacatccagggctatccagagaaaccttgtctcaaaaaacaaaacca
aacaacaacaaagcaaaaagataaaacaagagaatcaaaagcagcagaag
aaatgagagtgtttgccatcttattcttcatgtttgtggaaaaacatatt
aaaaactgcaagtaaaaatcaccatagacagttttattatccctataaag
ttgggaagatcctgtgcaaccagccttgatattattaggtattttcttta
aagatctctttaagcgttaacttatttagaaacacaggttattcgtgccc
ttcctcatatgacacaatatgatggcattattggcacagagactgcaggg
aggagccatgcttaccacacctgagtcctgggcacacatgcttgctcacg
tcccccaccacatttacccccaactccactcagcatttcctgtaagggat
gcagtaagacttgcctaaggccacactcatttccccattccctcagatat
ttcggagataagacactagaggaggagtttacagatacctttaaaacccc
gagtctcagtgctttgcaggatcatttcttctcagtgtccaagccagcaa
agaagcaactcatcaagatgagtctcggaggtgtttcagaggcaagccgt
gccacaccagaaatccagaagattgctgacaaggtgagtcgatgtacttc
aggaaaagatgtgatcccaaccaaacttccaacatttgattttatagttg
gccctgcgttaagactgtggaaatgacagaatcagaaatacatgattctg
ttcagacatttatacagataatgaccattgcacttcagagaatttttaaa
acccaaaataatcaactatcacactttttactggagctcagttcccagta
gctgaagtgaatcatactggatcacccctataccttccacgtctgatcca
ggagctctaggactggagtgatttcagtcactctagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36367199_36368354
seq2: B6Ng01-052J17.g_66_1202 (reverse)

seq1  ACTAGAGTGACTGGAAAATTCCATCAGTCCTTAGAGCTCCTGGGATCAGA  50
      |||||||||||||  ||||  |  |||||| |||||||||| ||||||||
seq2  ACTAGAGTGACTG--AAATCACTCCAGTCC-TAGAGCTCCT-GGATCAGA  46

seq1  CGTGTGAGGTATAGAGATGATCCAGTATGAATTCACCTTCAGCTACTGGG  100
      ||||  |||||||| | |||||||||||| ||||| ||||||||||||||
seq2  CGTGGAAGGTATAGGGGTGATCCAGTATG-ATTCA-CTTCAGCTACTGGG  94

seq1  GAAACTGAGGCTCCAGTAAAAAGTGTGATTAGGTTGATTTTATTTTTGGG  150
        |||||| ||||||||||||||||||||   |||||||    |||||||
seq2  --AACTGA-GCTCCAGTAAAAAGTGTGAT--AGTTGATT---ATTTTGGG  136

seq1  TTTTTAAAAATTTCTCTGAAGTGCATTGTTCATTATCTGTATAAATGTCT  200
      ||||  |||| |||||||||||||| || |||||||||||||||||||||
seq2  TTTT--AAAAATTCTCTGAAGTGCAATGGTCATTATCTGTATAAATGTCT  184

seq1  GAACAGAATCATGTATTTCTGATTTCTGTCATTTCCCACAGTCTTAACGC  250
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  GAACAGAATCATGTATTTCTGA-TTCTGTCATTT-CCACAGTCTTAACGC  232

seq1  AGGGCCAACTTATAAATCAAATGTTGGAAGTTTGGTTTGGGATCACATCT  300
      ||||||||||   |||||||||||||||||||||| ||||||||||||||
seq2  AGGGCCAACTATAAAATCAAATGTTGGAAGTTTGG-TTGGGATCACATCT  281

seq1  TTTCCTGAAGTACATCGACTCACCTTGTCAGCAATCTTCTGGATTTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAAGTACATCGACTCACCTTGTCAGCAATCTTCTGGATTTCTGG  331

seq1  TGTGGCACGGCTTGCCTCTGAAACACCTCCGAGACTCATCTTGATGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCACGGCTTGCCTCTGAAACACCTCCGAGACTCATCTTGATGAGTT  381

seq1  GCTTCTTTGCTGGCTTGGACACTGAGAAGAAATGATCCTGCAAAGCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTGCTGGCTTGGACACTGAGAAGAAATGATCCTGCAAAGCACTG  431

seq1  AGACTCGGGGTTTTAAAGGTATCTGTAAACTCCTCCTCTAGTGTCTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCGGGGTTTTAAAGGTATCTGTAAACTCCTCCTCTAGTGTCTTATC  481

seq1  TCCGAAATATCTGAGGGAATGGGGAAATGAGTGTGGCCTTAGGCAAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAAATATCTGAGGGAATGGGGAAATGAGTGTGGCCTTAGGCAAGTCT  531

seq1  TACTGCATCCCTTACAGGAAATGCTGAGTGGAGTTGGGGGTAAATGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCATCCCTTACAGGAAATGCTGAGTGGAGTTGGGGGTAAATGTGGT  581

seq1  GGGGGACGTGAGCAAGCATGTGTGCCCAGGACTCAGGTGTGGTAAGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACGTGAGCAAGCATGTGTGCCCAGGACTCAGGTGTGGTAAGCATG  631

seq1  GCTCCTCCCTGCAGTCTCTGTGCCAATAATGCCATCATATTGTGTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCCCTGCAGTCTCTGTGCCAATAATGCCATCATATTGTGTCATAT  681

seq1  GAGGAAGGGCACGAATAACCTGTGTTTCTAAATAAGTTAACGCTTAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGGCACGAATAACCTGTGTTTCTAAATAAGTTAACGCTTAAAGA  731

seq1  GATCTTTAAAGAAAATACCTAATAATATCAAGGCTGGTTGCACAGGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTAAAGAAAATACCTAATAATATCAAGGCTGGTTGCACAGGATCT  781

seq1  TCCCAACTTTATAGGGATAATAAAACTGTCTATGGTGATTTTTACTTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTTTATAGGGATAATAAAACTGTCTATGGTGATTTTTACTTGCA  831

seq1  GTTTTTAATATGTTTTTCCACAAACATGAAGAATAAGATGGCAAACACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAATATGTTTTTCCACAAACATGAAGAATAAGATGGCAAACACTC  881

seq1  TCATTTCTTCTGCTGCTTTTGATTCTCTTGTTTTATCTTTTTGCTTTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTTCTGCTGCTTTTGATTCTCTTGTTTTATCTTTTTGCTTTGTT  931

seq1  GTTGTTTGGTTTTGTTTTTTGAGACAAGGTTTCTCTGGATAGCCCTGGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGGTTTTGTTTTTTGAGACAAGGTTTCTCTGGATAGCCCTGGAT  981

seq1  GTCTTCAGCCTCACACTGTGATTAGGCTAGCCTCAAACTCACAGAGAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGCCTCACACTGTGATTAGGCTAGCCTCAAACTCACAGAGAAGT  1031

seq1  CCCTGTCCTTGCCTCCAAGTGCTGGGATAAAAGATGTGCCCCACAAAGCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCTTGCCTCCAAGTGCTGGGATAAAAGATGTGCCCCACAAAGCC  1081

seq1  TTGTGATTTTCCTTTTTTAGAAAGGCTCTCATGTAAACCAGGCTGGATTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTTTCCTTTTTTAGAAAGGCTCTCATGTAAACCAGGCTGGATTA  1131

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1137