BAC Information

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BAC

Clone NameB6Ng01-052N24
Chromosome16 (Build37)
Map Location 23,879,781 - 23,978,478
singlet/doubletdoublet
Overlap geneSst, Rtp2, Bcl6
Upstream geneAhsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023
Downstream geneEG433009, LOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052N24.bB6Ng01-052N24.g
ACCDH876096DH876097
length1,1431,094
definitionDH876096|Mus musculus domesticus DNA, BAC clone: B6Ng01-052N24, 5' end.DH876097|Mus musculus domesticus DNA, BAC clone: B6Ng01-052N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,879,781 - 23,880,709)(23,977,387 - 23,978,478)
sequence
gaattccaggtttgtgagtcccaagaagagctctttaacatggatctagc
ttatattttctttcctgttgcattttcaattagaagaaatagaaatatag
cacctgtttcatttttcccctttccatatttcctgccaaataagaggttc
acacagagatagaatctaggctgtttttcttttataatcccttccttagt
ggaacaagttctccctgggaattgaggctcagttgtacatcctattaccc
acaacacaggccatgcaaatgaagccacaatctgcttatgaccccttccc
atacatgctacttttaaaagttgtaatgtattctgtgcttcaccatatgg
tttggaggcttccttatattagcatgttgcctttcatttatcaaggagcc
gtgtcacccccatatcaaacagaggaagacagcctccttaggaactttcc
ttggagacactctactcccaaatgccttgaccttgcttgtgtgccccgcc
actcattgcagggagtaatgcaatcaccattaaagcaaggagacatacca
tccaatagcacatggggatgggcagcaatatctgcttgtctgtgcatatg
ctccaccctcataaaacgcagcttgggtttgatgtctaacatcatcacag
aagttatatgcttcgctccacctcaacacatccctagttatgtaagctcc
tactcagaatccaattgtgttgtgtaatcttccctgagaattaaaaatat
ctgctgtgcaccctcagagggtcccgatgacaaactaaagagacagtcct
atggaagtttagcttagtgaagcactgagttacaagagcatgagagtcaa
ctgcagccgcatgctgacagcttaccctaacagagatgcaaactcatgaa
agctgtatccctggaggtccttcaacagcttcaggcagaaaacttcctgc
ccccagccatagtgtatatagtgtattgcctctgtaaccttggggaagag
gcctttcaatacccgtgaattcaagttgcttttgggtctgcaagttggtt
taatttccttattcctgtcagtgccttccttctcttcccaagaggaatct
ttcaactcgaaggaagtaaacataaaagctaaaataagaaaag
gaattctctccatacaaatctcaggtttcacccctctggcccttcactaa
ctgacttcataccgttgtatgtatggtattatttgtccccgtactctttc
tcagttcaggctaacctggttgcctacagtgccaggattataagagtgct
aagtactcaaactattgaacgaaaaaactcacaatctcagagcatgggat
gaatagtgaaatgacattccgataaaaatagctacaccttttttttttta
agaacttattatggtgtaggcacatatttctaattttaaaaaccacatag
gtattgctgctcctattttggaaaatgaaagctcagaaacagtaccagca
cactccaagtaacagagctggtgaaaggaaaagcagcctgggtaactctc
caagagtggttttctccattgcaacacactcagggcctctcaatgcttgg
cagagtgtttagtatgcggaaaagcactttacaagcagcccttcccttcc
cctttcccccaaagagctttctacactggctttcattctccccatttgac
agctatgcaaagcaaagtccagaaatgggctatgaattgtccactatata
cctgagttgcatgcgatagcttatcaggctaagtcatctgcttggtcctc
ccggtaggcagggactaggttctcaaggagtaataggagttttaacgtct
gttcaggcaaacacaacatggcctccccggctgacagctgtatccagttt
acccggcacgctagtgatgttcttctcaaccttaatcgcctccggagtcg
ggacatcttgacggacgttgtcatcgtggtgagccgtgagcagtttagag
cccataagacagtgctcatggcctgcaggtgagtggtctcggcatgaagg
actgcagaaatggggatgcttggattgacagccagtgagacaatgtatag
ccattcctctatgtccgagatgacatttccctagtcctccagatctcagc
aatggcctgccattgtgggactcctcagaaacattgacgaactatccttg
ggaaaaccatggcttgtttctggaaggactagtggagtgaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_23879781_23880709
seq2: B6Ng01-052N24.b_264_1189

seq1  GGAATTGAGGCTCAGTTGTACATCCTATTACCCACAACACAGGCCATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGAGGCTCAGTTGTACATCCTATTACCCACAACACAGGCCATGCA  50

seq1  AATGAAGCCACAATCTGCTTATGACCCCTTCCCATACATGCTACTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCCACAATCTGCTTATGACCCCTTCCCATACATGCTACTTTTAA  100

seq1  AAGTTGTAATGTATTCTGTGCTTCACCATATGGTTTGGAGGCTTCCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTAATGTATTCTGTGCTTCACCATATGGTTTGGAGGCTTCCTTAT  150

seq1  ATTAGCATGTTGCCTTTCATTTATCAAGGAGCCGTGTCACCCCCATATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATGTTGCCTTTCATTTATCAAGGAGCCGTGTCACCCCCATATCA  200

seq1  AACAGAGGAAGACAGCCTCCTTAGGAACTTTCCTTGGAGACACTCTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGAAGACAGCCTCCTTAGGAACTTTCCTTGGAGACACTCTACTC  250

seq1  CCAAATGCCTTGACCTTGCTTGTGTGCCCCGCCACTCATTGCAGGGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCCTTGACCTTGCTTGTGTGCCCCGCCACTCATTGCAGGGAGTA  300

seq1  ATGCAATCACCATTAAAGCAAGGAGACATACCATCCAATAGCACATGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATCACCATTAAAGCAAGGAGACATACCATCCAATAGCACATGGGG  350

seq1  ATGGGCAGCAATATCTGCTTGTCTGTGCATATGCTCCACCCTCATAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAGCAATATCTGCTTGTCTGTGCATATGCTCCACCCTCATAAAAC  400

seq1  GCAGCTTGGGTTTGATGTCTAACATCATCACAGAAGTTATATGCTTCGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTGGGTTTGATGTCTAACATCATCACAGAAGTTATATGCTTCGCT  450

seq1  CCACCTCAACACATCCCTAGTTATGTAAGCTCCTACTCAGAATCCAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCAACACATCCCTAGTTATGTAAGCTCCTACTCAGAATCCAATTG  500

seq1  TGTTGTGTAATCTTCCCTGAGAATTAAAAATATCTGCTGTGCACCCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTAATCTTCCCTGAGAATTAAAAATATCTGCTGTGCACCCTCAG  550

seq1  AGGGTCCCGATGACAAACTAAAGAGACAGTCCTATGGAAGTTTAGCTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCCGATGACAAACTAAAGAGACAGTCCTATGGAAGTTTAGCTTAG  600

seq1  TGAAGCACTGAGTTACAAGAGCATGAGAGTCAACTGCAGCCGCATGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACTGAGTTACAAGAGCATGAGAGTCAACTGCAGCCGCATGCTGA  650

seq1  CAGCTTACCCTAACAGAGATGCAAACTCATGAAAGCTGTATCCCTGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTACCCTAACAGAGATGCAAACTCATGAAAGCTGTATCCCTGGAGG  700

seq1  TCCTTCAACAGCTTCAGGCAGATAACTTCCTGCCCCCAGCCATAGTGTAT  750
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCCTTCAACAGCTTCAGGCAGAAAACTTCCTGCCCCCAGCCATAGTGTAT  750

seq1  ATAGTGTATTGCCTCTGTAACCTTGGGG-AGAGGCCTTTCAATACCCGTG  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATAGTGTATTGCCTCTGTAACCTTGGGGAAGAGGCCTTTCAATACCCGTG  800

seq1  AATTTCAGTTGCTTTTGGGTCTTGCAAGTTGTGTTTATTTCCTTATCCCT  849
      ||||  ||||||||||||||| |||||||||  || |||||||||| |||
seq2  AATTCAAGTTGCTTTTGGGTC-TGCAAGTTGGTTTAATTTCCTTATTCCT  849

seq1  GTCAGTGCCTT-CTTCTCTCACCAAGAGGGATTCTTTCAACTCAGAGGAA  898
      ||||||||||| |||||||  |||||| ||| |||||||||||  |||||
seq2  GTCAGTGCCTTCCTTCTCTTCCCAAGA-GGAATCTTTCAACTCGAAGGAA  898

seq1  GTAAACATAAAATAGCATAAAATAAGAAAAG  929
      |||||||||||  ||| ||||||||||||||
seq2  GTAAACATAAA--AGC-TAAAATAAGAAAAG  926

seq1: chr16_23977387_23978478
seq2: B6Ng01-052N24.g_67_1160 (reverse)

seq1  TTCTTCACT-CACTAGTCCTT-CAGAA--CAGCAATGGTTTTCCAAAGGT  46
      ||||||||| ||||||||||| |||||   ||| |||||||||| |||| 
seq2  TTCTTCACTCCACTAGTCCTTCCAGAAACAAGCCATGGTTTTCCCAAGGA  50

seq1  ATGTTCGTTCAATTGTTTCTGA-GAGT-CCACAATGGCAGGCCATTTGCT  94
        ||||| |||| ||||||||| |||| |||||||||||||||| |||||
seq2  TAGTTCG-TCAA-TGTTTCTGAGGAGTCCCACAATGGCAGGCCA-TTGCT  97

seq1  GAGATCTGGA-GACTAAGGAAATGTCATCTCGGACATAGA-GAATGGCCT  142
      |||||||||| ||||| ||||||||||||||||||||||| |||||| ||
seq2  GAGATCTGGAGGACTAGGGAAATGTCATCTCGGACATAGAGGAATGG-CT  146

seq1  ATACATTTGTCTCACTGGCTGTCAATCCAAGCATCCCCATTTCTGCAGTC  192
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATACA-TTGTCTCACTGGCTGTCAATCCAAGCATCCCCATTTCTGCAGT-  194

seq1  CCTTCATGCCGAGACCACTCACCTGCAGGCCATGAGCACTGTCTTATGGG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGCCGAGACCACTCACCTGCAGGCCATGAGCACTGTCTTATGGG  244

seq1  CTCTAAACTGCTCACGGCTCACCACGATGACAACGTCCGTCAAGATGTCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACTGCTCACGGCTCACCACGATGACAACGTCCGTCAAGATGTCC  294

seq1  CGACTCCGGAGGCGATTAAGGTTGAGAAGAACATCACTAGCGTGCCGGGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCCGGAGGCGATTAAGGTTGAGAAGAACATCACTAGCGTGCCGGGT  344

seq1  AAACTGGATACAGCTGTCAGCCGGGGAGGCCATGTTGTGTTTGCCTGAAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGATACAGCTGTCAGCCGGGGAGGCCATGTTGTGTTTGCCTGAAC  394

seq1  AGACGTTAAAACTCCTATTACTCCTTGAGAACCTAGTCCCTGCCTACCGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTTAAAACTCCTATTACTCCTTGAGAACCTAGTCCCTGCCTACCGG  444

seq1  GAGGACCAAGCAGATGACTTAGCCTGATAAGCTATCGCATGCAACTCAGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCAAGCAGATGACTTAGCCTGATAAGCTATCGCATGCAACTCAGG  494

seq1  TATATAGTGGACAATTCATAGCCCATTTCTGGACTTTGCTTTGCATAGCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTGGACAATTCATAGCCCATTTCTGGACTTTGCTTTGCATAGCT  544

seq1  GTCAAATGGGGAGAATGAAAGCCAGTGTAGAAAGCTCTTTGGGGGAAAGG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATGGGGAGAATGAAAGCCAGTGTAGAAAGCTCTTTGGGGGAAAGG  594

seq1  GGAAGGGAAGGGCTGCTTGTAAAGTGCTTTTCCGCATACTAAACACTCTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGAAGGGCTGCTTGTAAAGTGCTTTTCCGCATACTAAACACTCTG  644

seq1  CCAAGCATTGAGAGGCCCTGAGTGTGTTGCAATGGAGAAAACCACTCTTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATTGAGAGGCCCTGAGTGTGTTGCAATGGAGAAAACCACTCTTG  694

seq1  GAGAGTTACCCAGGCTGCTTTTCCTTTCACCAGCTCTGTTACTTGGAGTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTACCCAGGCTGCTTTTCCTTTCACCAGCTCTGTTACTTGGAGTG  744

seq1  TGCTGGTACTGTTTCTGAGCTTTCATTTTCCAAAATAGGAGCAGCAATAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTACTGTTTCTGAGCTTTCATTTTCCAAAATAGGAGCAGCAATAC  794

seq1  CTATGTGGTTTTTAAAATTAGAAATATGTGCCTACACCATAATAAGTTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGGTTTTTAAAATTAGAAATATGTGCCTACACCATAATAAGTTCT  844

seq1  TAAAAAAAAAAAGGTGTAGCTATTTTTATCGGAATGTCATTTCACTATTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAGGTGTAGCTATTTTTATCGGAATGTCATTTCACTATTC  894

seq1  ATCCCATGCTCTGAGATTGTGAGTTTTTTCGTTCAATAGTTTGAGTACTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATGCTCTGAGATTGTGAGTTTTTTCGTTCAATAGTTTGAGTACTT  944

seq1  AGCACTCTTATAATCCTGGCACTGTAGGCAACCAGGTTAGCCTGAACTGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCTTATAATCCTGGCACTGTAGGCAACCAGGTTAGCCTGAACTGA  994

seq1  GAAAGAGTACGGGGACAAATAATACCATACATACAACGGTATGAAGTCAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTACGGGGACAAATAATACCATACATACAACGGTATGAAGTCAG  1044

seq1  TTAGTGAAGGGCCAGAGGGGTGAAACCTGAGATTTGTATGGAGAGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAAGGGCCAGAGGGGTGAAACCTGAGATTTGTATGGAGAGAATTC  1094