BAC Information

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BAC

Clone NameB6Ng01-054A13
Chromosome16 (Build37)
Map Location 23,487,385 - 23,599,800
singlet/doubletdoublet
Overlap geneMasp1, LOC100043018
Upstream geneDgkg, LOC671242, LOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1, Rtp1
Downstream geneRtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054A13.bB6Ng01-054A13.g
ACCDH876901DH876902
length1,1241,144
definitionDH876901|Mus musculus domesticus DNA, BAC clone: B6Ng01-054A13, 5' end.DH876902|Mus musculus domesticus DNA, BAC clone: B6Ng01-054A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,487,385 - 23,488,510)(23,598,645 - 23,599,800)
sequence
ggaattcttctggaagcaactacagctgtggagagggaaacagcccaggc
atgtgtggaagacactgtttggcaggagtccttccagacctctgttctca
caacccttccatcaccttttctgcagggttccttgaactctatgatgagg
ggtgtgatgtaggtgaccatttagggctgaggacagttcctcattttcta
cagtctggccggatgtgagtctatgtctttatcacagcccattgtaaaat
gacgcttctctgatacaggttgagagcttcatgaatctacgggtgtagaa
gagtttagaaggcggtttggcagtatatccatttgacaaaatgataccag
tggttctttcctgagttccatggccttcccaggcataggttcttcgccaa
atctacagggccaggcatgagtcctgtggtgtgagccttaaattcaatta
taaggcagttggtcactgaaggaggagtgggtcagcaagcgaagcaggtg
tttccacattcaccaaccctggaatatacctgacacccagaggtgaacaa
agacagagcatgtgactggggcagccaatcaactgagcgggacaaacagc
tggggacgaaggggaggcaagcccaaggtacatgccaaggcaccaatcat
tattttattcaaagagtctgcttctgcttcttaccgggctcccgggatct
gtgttgttgatttctgtttcttcttactccctaccctcaaggattgtctc
aggggctgatggctaaggcaaccggtcactctataacattaatgccacta
ttgcacccaagagcgtatcgtacaagaatactattatagatcacaaggct
cacacctgagtgtgcctgttggtgactgttctccctcagcagcctttatg
gcaccacaggtaccatgaaagctagccaaaggaaacaaactactaggtca
gaactgcttggcttcttcatgccctggggagtcagtgtagggtgtcttca
gcaataaagtcttaccatttagttatgatgggtggcaaggagcaaatgac
aataactggttttgtttatcaggttcgtggggatctctctgaccacaact
tgaaaggtagaatcctgcacctgc
gaattctaggctagggttccttcattattcatgatgataagtttgcagtt
ccttcctgacccagaggagtccgctaagctgtagagaagtgctcagattt
ctctgctgccatactctcagggaggtatgcacactctaagacaggacaag
ttggcagcagcaaccaaagcacgagaggcatggggaaatatcaatgggtg
tatttatactgcttccctgagaatcttttcgtgagccaccgagcatatcc
tcggcaggaccacagctctagttagcactgcctttcagccgaagatcagt
gtgaagggaaaggaagtgttgaaactataccaacaaggccagagggccac
agcgttgttatagatggccataacaagaaaccagtggattgaaggaaatg
aagaattaagagattggctttaaaagtccaatggtacattcagtcaaaac
ctataatcttctagtcccatcagacttccttcaggcaatgccaggtgggc
aaagaagacaaggctgatcccagagattcggtcctgctatgaactcctga
gaatcactttttctatcccctcatttttttcagagctgagcgtccctctc
ccttgctggatctctgctctttgaatctgtgtctccttcactctttctca
ccatggtccactcataacatcattggatccctgagctggagccaggctgg
ccattttgtgttctggctctaccatttgctaccacagtgaccttggtcag
gctccgaagcctttctgtgcctcagtttccctatctagacctgagataag
aatattaccatttcacagggctgcttgagaactcagtggttaaaatagtt
agcagcactggcatatagaagtatttacgttttttattgctgctgttcta
tggttctttgaagtactataaaaactttgttaaacaccttagactataac
atggcaaaatttcatattgtaaaataaggagaaaatcatgaatatgtagt
gaaagaattttataaaatgtctctacatttaaagagaacttaactttact
gacctcgagcaaactatacactgtacagtcatttcaagacttatcctgct
atccacgtgtattgccatttgttttttctgccctcaaagaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_23487385_23488510
seq2: B6Ng01-054A13.b_48_1170

seq1  GAATTCTTCTGGAAGCAACTACAGCTGTGGAGAGGGAAACAGCCCAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGGAAGCAACTACAGCTGTGGAGAGGGAAACAGCCCAGGCA  50

seq1  TGTGTGGAAGACACTGTTTGGCAGGAGTCCTTCCAGACCTCTGTTCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGAAGACACTGTTTGGCAGGAGTCCTTCCAGACCTCTGTTCTCAC  100

seq1  AACCCTTCCATCACCTTTTCTGCAGGGTTCCTTGAACTCTATGATGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTCCATCACCTTTTCTGCAGGGTTCCTTGAACTCTATGATGAGGG  150

seq1  GTGTGATGTAGGTGACCATTTAGGGCTGAGGACAGTTCCTCATTTTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATGTAGGTGACCATTTAGGGCTGAGGACAGTTCCTCATTTTCTAC  200

seq1  AGTCTGGCCGGATGTGAGTCTATGTCTTTATCACAGCCCATTGTAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGCCGGATGTGAGTCTATGTCTTTATCACAGCCCATTGTAAAATG  250

seq1  ACGCTTCTCTGATACAGGTTGAGAGCTTCATGAATCTACGGGTGTAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTCTCTGATACAGGTTGAGAGCTTCATGAATCTACGGGTGTAGAAG  300

seq1  AGTTTAGAAGGCGGTTTGGCAGTATATCCATTTGACAAAATGATACCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGAAGGCGGTTTGGCAGTATATCCATTTGACAAAATGATACCAGT  350

seq1  GGTTCTTTCCTGAGTTCCATGGCCTTCCCAGGCATAGGTTCTTCGCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTCCTGAGTTCCATGGCCTTCCCAGGCATAGGTTCTTCGCCAAA  400

seq1  TCTACAGGGCCAGGCATGAGTCCTGTGGTGTGAGCCTTAAATTCAATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGGGCCAGGCATGAGTCCTGTGGTGTGAGCCTTAAATTCAATTAT  450

seq1  AAGGCAGTTGGTCACTGAAGGAGGAGTGGGTCAGCAAGCGAAGCAGGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGTTGGTCACTGAAGGAGGAGTGGGTCAGCAAGCGAAGCAGGTGT  500

seq1  TTCCACATTCACCAACCCTGGAATATACCTGACACCCAGAGGTGAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATTCACCAACCCTGGAATATACCTGACACCCAGAGGTGAACAAA  550

seq1  GACAGAGCATGTGACTGGGGCAGCCAATCAACTGAGCGGGACAAACAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCATGTGACTGGGGCAGCCAATCAACTGAGCGGGACAAACAGCT  600

seq1  GGGGACGAAGGGGAGGCAAGCCCAAGGTACATGCCAAGGCACCAATCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACGAAGGGGAGGCAAGCCCAAGGTACATGCCAAGGCACCAATCATT  650

seq1  ATTTTATTCAAAGAGTCTGCTTCTGCTTCTTACCGGGCTCCCGGGATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTCAAAGAGTCTGCTTCTGCTTCTTACCGGGCTCCCGGGATCTG  700

seq1  TGTTGTTGATTTCTGTTTCTTCTTACTCCCTACCCTCAAGGATTGTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGATTTCTGTTTCTTCTTACTCCCTACCCTCAAGGATTGTCTCA  750

seq1  GGGGCTGATGGCTAAGGCAACCGGTCACTCTATAACATTAATGCCACTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGATGGCTAAGGCAACCGGTCACTCTATAACATTAATGCCACTAT  800

seq1  TGCACCCAAGAGCGTATCGTACAAGAATACTATTATAGATCACAAGGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCAAGAGCGTATCGTACAAGAATACTATTATAGATCACAAGGCTC  850

seq1  ACACCTGAGTGTGCCTGTTGGTGACTGTTCTCCCTCAGCAGCCTTTATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGAGTGTGCCTGTTGGTGACTGTTCTCCCTCAGCAGCCTTTATGG  900

seq1  CACCACAGGTACCATGAAAGCTAGCCAAAGGAAACAAACTACTAGGTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAGGTACCATGAAAGCTAGCCAAAGGAAACAAACTACTAGGTCAG  950

seq1  AACCTGCTTGGCTTCTCCATGCCCT-GGGAGTCAAGTGTAGGGTGTCTTC  999
      || ||||||||||||| |||||||| ||||||| ||||||||||||||||
seq2  AA-CTGCTTGGCTTCTTCATGCCCTGGGGAGTC-AGTGTAGGGTGTCTTC  998

seq1  AGCAATAGAGTCTTACCATTTAGTTATGATGGGTGGCAAGGAGCAAATGA  1049
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAAAGTCTTACCATTTAGTTATGATGGGTGGCAAGGAGCAAATGA  1048

seq1  CAATAACCTGTTTTGTTTATCAGGGTTCTGTGGGATCTCTCTGACCAACA  1099
      |||||||  ||||||||||||| |||||   ||||||||||||||| |||
seq2  CAATAACTGGTTTTGTTTATCA-GGTTCGTGGGGATCTCTCTGACC-ACA  1096

seq1  ACTTGAAGGGTAGTATCCTGCACCTGC  1126
      ||||||| ||||| |||||||||||||
seq2  ACTTGAAAGGTAGAATCCTGCACCTGC  1123

seq1: chr16_23598645_23599800
seq2: B6Ng01-054A13.g_70_1213 (reverse)

seq1  TTGTTCTTTTGAAGGCAGAACAAACAAATGGGCAGAATACACGGTGGGAT  50
      |||||| ||||| ||||||| ||||||||||    ||||||||   ||||
seq2  TTGTTC-TTTGAGGGCAGAAAAAACAAATGG---CAATACACG--TGGAT  44

seq1  AGCAGGATAAGTC-TGAAATGACTGTACAGTGTATTAGTTTTGCTCGAGG  99
      ||||||||||||| |||||||||||||||||||| ||| |||||||||||
seq2  AGCAGGATAAGTCTTGAAATGACTGTACAGTGTA-TAG-TTTGCTCGAGG  92

seq1  TCCAGTAAAAGTTAG-TCTCTTTAAATGTAGGAGACATTTTTATAAAATT  148
      | |||||||  | || |||||||||||||| |||||| ||||||||||||
seq2  T-CAGTAAAGTTAAGTTCTCTTTAAATGTA-GAGACA-TTTTATAAAATT  139

seq1  CTATCACCTACATATTCATGATTTTTCTCCTTATTTTACAATATTGAAAT  198
      || ||| |||||||||||||| ||||||||||||||||||||| ||||||
seq2  CTTTCA-CTACATATTCATGA-TTTTCTCCTTATTTTACAATA-TGAAAT  186

seq1  TTTGCCATGTTATAGTCCTAAGGTGTTTAACAAAGTTTTTATAGTACTTC  248
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTGCCATGTTATAGT-CTAAGGTGTTTAACAAAGTTTTTATAGTACTTC  235

seq1  AAAGAACCATAGAACAGCAGCAAT-AAAAACGTAAATACTTCTATATGCC  297
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAGAACCATAGAACAGCAGCAATAAAAAACGTAAATACTTCTATATGCC  285

seq1  AGTGCTGCTAACTATTTTAACCACTGAGTTCTCAAGCAGCCCTGTGAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGCTAACTATTTTAACCACTGAGTTCTCAAGCAGCCCTGTGAAAT  335

seq1  GGTAATATTCTTATCTCAGGTCTAGATAGGGAAACTGAGGCACAGAAAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATATTCTTATCTCAGGTCTAGATAGGGAAACTGAGGCACAGAAAGG  385

seq1  CTTCGGAGCCTGACCAAGGTCACTGTGGTAGCAAATGGTAGAGCCAGAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGAGCCTGACCAAGGTCACTGTGGTAGCAAATGGTAGAGCCAGAAC  435

seq1  ACAAAATGGCCAGCCTGGCTCCAGCTCAGGGATCCAATGATGTTATGAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGGCCAGCCTGGCTCCAGCTCAGGGATCCAATGATGTTATGAGT  485

seq1  GGACCATGGTGAGAAAGAGTGAAGGAGACACAGATTCAAAGAGCAGAGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATGGTGAGAAAGAGTGAAGGAGACACAGATTCAAAGAGCAGAGAT  535

seq1  CCAGCAAGGGAGAGGGACGCTCAGCTCTGAAAAAAATGAGGGGATAGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAGGGAGAGGGACGCTCAGCTCTGAAAAAAATGAGGGGATAGAAA  585

seq1  AAGTGATTCTCAGGAGTTCATAGCAGGACCGAATCTCTGGGATCAGCCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTCTCAGGAGTTCATAGCAGGACCGAATCTCTGGGATCAGCCTT  635

seq1  GTCTTCTTTGCCCACCTGGCATTGCCTGAAGGAAGTCTGATGGGACTAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTTGCCCACCTGGCATTGCCTGAAGGAAGTCTGATGGGACTAGA  685

seq1  AGATTATAGGTTTTGACTGAATGTACCATTGGACTTTTAAAGCCAATCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATAGGTTTTGACTGAATGTACCATTGGACTTTTAAAGCCAATCTC  735

seq1  TTAATTCTTCATTTCCTTCAATCCACTGGTTTCTTGTTATGGCCATCTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTTCATTTCCTTCAATCCACTGGTTTCTTGTTATGGCCATCTAT  785

seq1  AACAACGCTGTGGCCCTCTGGCCTTGTTGGTATAGTTTCAACACTTCCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACGCTGTGGCCCTCTGGCCTTGTTGGTATAGTTTCAACACTTCCTT  835

seq1  TCCCTTCACACTGATCTTCGGCTGAAAGGCAGTGCTAACTAGAGCTGTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCACACTGATCTTCGGCTGAAAGGCAGTGCTAACTAGAGCTGTGG  885

seq1  TCCTGCCGAGGATATGCTCGGTGGCTCACGAAAAGATTCTCAGGGAAGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCGAGGATATGCTCGGTGGCTCACGAAAAGATTCTCAGGGAAGCA  935

seq1  GTATAAATACACCCATTGATATTTCCCCATGCCTCTCGTGCTTTGGTTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATACACCCATTGATATTTCCCCATGCCTCTCGTGCTTTGGTTGC  985

seq1  TGCTGCCAACTTGTCCTGTCTTAGAGTGTGCATACCTCCCTGAGAGTATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCAACTTGTCCTGTCTTAGAGTGTGCATACCTCCCTGAGAGTATG  1035

seq1  GCAGCAGAGAAATCTGAGCACTTCTCTACAGCTTAGCGGACTCCTCTGGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAGAAATCTGAGCACTTCTCTACAGCTTAGCGGACTCCTCTGGG  1085

seq1  TCAGGAAGGAACTGCAAACTTATCATCATGAATAATGAAGGAACCCTAGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGGAACTGCAAACTTATCATCATGAATAATGAAGGAACCCTAGC  1135

seq1  CTAGAATTC  1156
      |||||||||
seq2  CTAGAATTC  1144