BAC Information

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BAC

Clone NameB6Ng01-054G09
Chromosome16 (Build37)
Map Location 74,030,392 - 74,142,297
singlet/doubletdoublet
Overlap geneRobo2
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneLOC665042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054G09.bB6Ng01-054G09.g
ACCDH877151DH877152
length1,0981,119
definitionDH877151|Mus musculus domesticus DNA, BAC clone: B6Ng01-054G09, 5' end.DH877152|Mus musculus domesticus DNA, BAC clone: B6Ng01-054G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,141,191 - 74,142,297)(74,030,392 - 74,031,542)
sequence
gaattctgtgagtatctgatggtaggttacatgcaaagaagagaagtgtt
ggctgatgagaatcatgactctcaatagcagagtagcagcatctacaaaa
gacacatactacacagctgagagaacgaaaatatacactaatagcagaaa
tatgctaagaaacttatggtagacctaatttattaaaacctcactcatgt
tgactaacatatatatatatatatatatatatatatatatatatatatat
atataaaatggtattctttcattttgcatgtctgtggtgtacatgcgtat
atttgttctcatgcagatgcatccccaaatatctgcaattatagggacat
gtgtgcctctgtatgattgtgtaggccagagttaagcatctttctcaagc
actccccactttatacatcgagatagggccgctgatttgaatccagagct
tggaagctagcaacccagcttcctttgaagcccacatgtcctgcctgtag
tgatccgccttgcaaggcatctgcttaattcattggcccatctcctcagg
gcttacactatttttatggggaaacagaagagtggtcaaggctgagaatt
accagaattgctgaaaactcttacatctgcctttaatagtcttgattttt
gcctataacttatttgagagattatcctccatgttgttggagcaccagcc
atcaaagctccatcgggtatgtatctttctgtggctgacattttcggggt
cctctagtctaggcgttctgtgtggggaatgtgctttctttgtgaaggtg
gccatacagctagatgaggaaaatgtctaagatgaatttgcttgcctgaa
tcgatttgcatatgattcctcacaaaaatctttagtagtttctatttatc
tcaagagactattatctagatcatgcttttgtttcgttaactcctcagag
tagaattctttcaaagtggtttgtttaatactctaatgaagaaacaatca
taactgggtcaagcttgcacagagcctatcaaaatctatttgtgctgcta
gaaaaaaagaaaaaactttatggatcctgagattcgatcatactaaaa
gaattctagaaaaatctcacttaaaatagactttagaaaagggacttgtc
agtgggctgagggaaattgatagaattttacactatatttcttaaaatgc
ttattctgtaggcccctttctgttttatgaaatattcatgaattacctac
actatatggaagctatcaactgcatttagaagtagcaggcatacataaga
atgtaaatggcatattttatttcttctctccccccctccccacagaaaag
ctattatgaacattccattctactagagacccttattgcagaagttggtc
tcactttagaatcagtttagaaacaaaataaataaaaatgaaaaaaaaaa
aaaactgggacgctaaataatggtgacatagtaaaaatcatacaagtgat
gaaatatactaaatgttcagtttgcagtattttgctaacaacgtgaagca
cagtcagtgcttttatgattagaaatgagacaataattaatataatgtct
cttctgtttacccaagttctaagaagcttattttaaggtctccatcccac
tactagattaaataggacgttttagtgaatgcttgtcaattttgctctta
tttctttgtacatagcaggtaatatttactcctttatgttaacttataat
attttgatagagtcagcagcatatggattttttgatgtactcttttgata
atccccttgaatgctgcccctttcattagaacttcaagcaccttctatca
cataaagtacttgtgaaaacatatcataaatcacttgatcttcaaagatc
actaacaagcacaagcgtctagggtcagctgacacacaaggatgcagagc
tgagaaaaaaagagttctacctcagctttttgtctttgatgtattcagta
tgtaaatggatgtccatatagcttctctcattaacctacactcaaagata
aaacaaaaaaaaaacactacttgcactttcctttaagatacttttgcaac
tggtgatgagaactgaagagctttcataatgatcttctattaggtccaca
gtgcaatgtgttattagataaacattcgactcgaaagttcttcttttgca
cactttttttttgttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_74141191_74142297
seq2: B6Ng01-054G09.b_47_1144 (reverse)

seq1  TTTTAAGTATGATCGAAGTCCAGGGATCATAAAAGTTATTTCTTTTTTTT  50
       ||| |||||||||||| ||   |||||   |||||| ||||   |||||
seq2  -TTTTAGTATGATCGAA-TCTCAGGATCCATAAAGTTTTTTC---TTTTT  45

seq1  TTCTAGCAGCAACAAAATAGAATATTGATAAGGCTCTGTGACAAGCTTGA  100
      |||||||||||   |||||| || ||||| |||||||||| |||||||||
seq2  TTCTAGCAGCA--CAAATAG-ATTTTGAT-AGGCTCTGTG-CAAGCTTGA  90

seq1  GCCAGTTATGATTTGTTTCTTCATTAGAGTATTTAAACAAACCACTCTGA  150
       |||||||||| ||||||||||||||||||| |||||||||||||| || 
seq2  CCCAGTTATGA-TTGTTTCTTCATTAGAGTA-TTAAACAAACCACTTTG-  137

seq1  AAAGAAGTCTACTCTGA-GAGTTAACGAAACAAAAGCAATGATCTAGATT  199
      |||||| |||||||||| ||||||||||||||||||| |||||||||| |
seq2  AAAGAATTCTACTCTGAGGAGTTAACGAAACAAAAGC-ATGATCTAGA-T  185

seq1  AATAGGTCTCTTGAGATAAATAGAAACTACTTAAAGAATTTTTGTGAGGA  249
      |||| ||||||||||||||||||||||||| ||||| |||||||||||||
seq2  AATA-GTCTCTTGAGATAAATAGAAACTAC-TAAAG-ATTTTTGTGAGGA  232

seq1  ATCATATGCAAATCGATTCAGGCAAGCAAATTCATCTTAGACATTTTCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGCAAATCGATTCAGGCAAGCAAATTCATCTTAGACATTTTCCT  282

seq1  CATCTAGCTGTATGGCCACCTTCACAAAGAAAGCACATTCCCCACACAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGCTGTATGGCCACCTTCACAAAGAAAGCACATTCCCCACACAGA  332

seq1  ACGCCTAGACTAGAGGACCCCGAAAATGTCAGCCACAGAAAGATACATAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTAGACTAGAGGACCCCGAAAATGTCAGCCACAGAAAGATACATAC  382

seq1  CCGATGGAGCTTTGATGGCTGGTGCTCCAACAACATGGAGGATAATCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGGAGCTTTGATGGCTGGTGCTCCAACAACATGGAGGATAATCTCT  432

seq1  CAAATAAGTTATAGGCAAAAATCAAGACTATTAAAGGCAGATGTAAGAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGTTATAGGCAAAAATCAAGACTATTAAAGGCAGATGTAAGAGT  482

seq1  TTTCAGCAATTCTGGTAATTCTCAGCCTTGACCACTCTTCTGTTTCCCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAATTCTGGTAATTCTCAGCCTTGACCACTCTTCTGTTTCCCCA  532

seq1  TAAAAATAGTGTAAGCCCTGAGGAGATGGGCCAATGAATTAAGCAGATGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAGTGTAAGCCCTGAGGAGATGGGCCAATGAATTAAGCAGATGC  582

seq1  CTTGCAAGGCGGATCACTACAGGCAGGACATGTGGGCTTCAAAGGAAGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAGGCGGATCACTACAGGCAGGACATGTGGGCTTCAAAGGAAGCT  632

seq1  GGGTTGCTAGCTTCCAAGCTCTGGATTCAAATCAGCGGCCCTATCTCGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCTAGCTTCCAAGCTCTGGATTCAAATCAGCGGCCCTATCTCGAT  682

seq1  GTATAAAGTGGGGAGTGCTTGAGAAAGATGCTTAACTCTGGCCTACACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAGTGGGGAGTGCTTGAGAAAGATGCTTAACTCTGGCCTACACAA  732

seq1  TCATACAGAGGCACACATGTCCCTATAATTGCAGATATTTGGGGATGCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAGAGGCACACATGTCCCTATAATTGCAGATATTTGGGGATGCAT  782

seq1  CTGCATGAGAACAAATATACGCATGTACACCACAGACATGCAAAATGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGAGAACAAATATACGCATGTACACCACAGACATGCAAAATGAAA  832

seq1  GAATACCATTT--------TATATATATATATATATATATATATATATAT  891
      |||||||||||        |||||||||||||||||||||||||||||||
seq2  GAATACCATTTTATATATATATATATATATATATATATATATATATATAT  882

seq1  ATATATATGTTAGTCAACATGAGTGAGGTTTTAATAAATTAGGTCTACCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATGTTAGTCAACATGAGTGAGGTTTTAATAAATTAGGTCTACCA  932

seq1  TAAGTTTCTTAGCATATTTCTGCTATTAGTGTATATTTTCGTTCTCTCAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCTTAGCATATTTCTGCTATTAGTGTATATTTTCGTTCTCTCAG  982

seq1  CTGTGTAGTATGTGTCTTTTGTAGATGCTGCTACTCTGCTATTGAGAGTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGTATGTGTCTTTTGTAGATGCTGCTACTCTGCTATTGAGAGTC  1032

seq1  ATGATTCTCATCAGCCAACACTTCTCTTCTTTGCATGTAACCTACCATCA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTCATCAGCCAACACTTCTCTTCTTTGCATGTAACCTACCATCA  1082

seq1  GATACTCACAGAATTC  1107
      ||||||||||||||||
seq2  GATACTCACAGAATTC  1098

seq1: chr16_74030392_74031542
seq2: B6Ng01-054G09.g_66_1184

seq1  GAATTCTAGAAAAATCTCACTTAAAATAGACTTTAGAAAAGGGACTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAAAATCTCACTTAAAATAGACTTTAGAAAAGGGACTTGTC  50

seq1  AGTGGGCTGAGGGAAATTGATAGAATTTTACACTATATTTCTTAAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCTGAGGGAAATTGATAGAATTTTACACTATATTTCTTAAAATGC  100

seq1  TTATTCTGTAGGCCCCTTTCTGTTTTATGAAATATTCATGAATTACCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGTAGGCCCCTTTCTGTTTTATGAAATATTCATGAATTACCTAC  150

seq1  ACTATATGGAAGCTATCAACTGCATTTAGAAGTAGCAGGCATACATAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATGGAAGCTATCAACTGCATTTAGAAGTAGCAGGCATACATAAGA  200

seq1  ATGTAAATGGCATATTTTATTTCTTCTCTCCCCCCCTCCCCACAGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATGGCATATTTTATTTCTTCTCTCCCCCCCTCCCCACAGAAAAG  250

seq1  CTATTATGAACATTCCATTCTACTAGAGACCCTTATTGCAGAAGTTGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATGAACATTCCATTCTACTAGAGACCCTTATTGCAGAAGTTGGTC  300

seq1  TCACTTTAGAATCAGTTTAGAAACAAAATAAATAAAAATG-AAAAAAAAA  349
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCACTTTAGAATCAGTTTAGAAACAAAATAAATAAAAATGAAAAAAAAAA  350

seq1  AAAACTGGGACGCTAAATAATGGTGACATAGTAAAAATCATACAAGTGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGGACGCTAAATAATGGTGACATAGTAAAAATCATACAAGTGAT  400

seq1  GAAATATACTAAATGTTCAGTTTGCAGTATTTTGCTAACAACGTGAAGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATACTAAATGTTCAGTTTGCAGTATTTTGCTAACAACGTGAAGCA  450

seq1  CAGTCAGTGCTTTTATGATTAGAAATGAGACAATAATTAATATAATGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTGCTTTTATGATTAGAAATGAGACAATAATTAATATAATGTCT  500

seq1  CTTCTGTTTACCCAAGTTCTAAGAAGCTTATTTTAAGGTCTCCATCCCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTTACCCAAGTTCTAAGAAGCTTATTTTAAGGTCTCCATCCCAC  550

seq1  TACTAGATTAAATAGGACGTTTTAGTGAATGCTTGTCAATTTTGCTCTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGATTAAATAGGACGTTTTAGTGAATGCTTGTCAATTTTGCTCTTA  600

seq1  TTTCTTTGTACATAGCAGGTAATATTTACTCCTTTATGTTAACTTATAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTACATAGCAGGTAATATTTACTCCTTTATGTTAACTTATAAT  650

seq1  ATTTTGATAGAGTCAGCAGCATATGGATTTTTTGATGTACTCTTTTGATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATAGAGTCAGCAGCATATGGATTTTTTGATGTACTCTTTTGATA  700

seq1  ATCCCCTTGAATGCTGCCCCTTTCATTAGAACTTCAAGCACCTTCTATCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTTGAATGCTGCCCCTTTCATTAGAACTTCAAGCACCTTCTATCA  750

seq1  CATAAAGTACTTGTGAAAACATATCATAAATCACTTGATCTTCAAAGATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGTACTTGTGAAAACATATCATAAATCACTTGATCTTCAAAGATC  800

seq1  ACTAACAAGCACAAGCGTCTAGGGTCAGCTGACACACAAGGATGCAGAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAAGCACAAGCGTCTAGGGTCAGCTGACACACAAGGATGCAGAGC  850

seq1  TGAGAAAAAAAGAGTTCTACCTCAGCTTTTTGTCTTTGATGTATTCAGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAAAAGAGTTCTACCTCAGCTTTTTGTCTTTGATGTATTCAGTA  900

seq1  TGTAAATGGATGTCCATATAGCCTTCTCTCATTAACCTACAACTCAAAGA  949
      ||||||||||||||||||||| |||||||||||||||||| |||||||| 
seq2  TGTAAATGGATGTCCATATAG-CTTCTCTCATTAACCTAC-ACTCAAAG-  947

seq1  ATAAAAACAAAAAAAAAAAACACTACTTGCACTTTCCTTTAAAGAATTAC  999
      |||||   | |||||||||||||||||||||||||||||| ||||  |||
seq2  ATAAA---ACAAAAAAAAAACACTACTTGCACTTTCCTTT-AAGA--TAC  991

seq1  TTTTGCAAACTGGTGATGAGAACTG-AGAGCTTTCAATAAATTGATCCTT  1048
      |||||| |||||||||||||||||| ||||||||| ||||  |||| |||
seq2  TTTTGC-AACTGGTGATGAGAACTGAAGAGCTTTC-ATAA--TGAT-CTT  1036

seq1  CTATTTAAGTTCCACAGGTGCAAATGTGTTATTAGAAATTAAAACCATTT  1098
      |||||  || |||||| |||| ||||||||||||||   ||||  |||| 
seq2  CTATT--AGGTCCACA-GTGC-AATGTGTTATTAGA---TAAA--CATT-  1076

seq1  CGGACTCGAAAGTTCCTTCCTTTTTTGCCAACACTTTTTTTTTTTTGTTG  1148
        |||||||||||| ||||   ||||||  ||||   |||||||||||||
seq2  -CGACTCGAAAGTT-CTTC---TTTTGC--ACAC---TTTTTTTTTGTTG  1116

seq1  TTT  1151
      |||
seq2  TTT  1119