BAC Information

Click to search

BAC

Clone NameB6Ng01-055J21
Chromosome16 (Build37)
Map Location 12,004,055 - 12,186,907
singlet/doubletdoublet
Overlap gene2700045P11Rik
Upstream geneLOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik
Downstream geneEG622509, LOC622553, Ercc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055J21.bB6Ng01-055J21.g
ACCDH878011DH878012
length1,186860
definitionDH878011|Mus musculus domesticus DNA, BAC clone: B6Ng01-055J21, 5' end.DH878012|Mus musculus domesticus DNA, BAC clone: B6Ng01-055J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,185,708 - 12,186,907)(12,004,055 - 12,004,911)
sequence
gaattcctgctgaagattcatacactggtcaactggcttctctgcctcaa
agaaaatcattatcaccctctgtttaaagcatttcgttcgcctcgcatca
gtctcttctagtaggctctgaattccagaaagatcagcaatacattatag
agtgatttatcattttcattgtcatgttacagcacgctaattggaataca
ctgagcagaaactgaggtcttccctccacctacacatgctgttaaagttc
atggccactgacttcaatatatcttctcccataaagcataaaaataggaa
gcaagtcccctctgaagaatttcctaacctacctgctactacatgctaat
gtgcttttgatgggttcaaatggtaagatttctgcatcacaatggaaaca
cccccctcagtgaaataatacagtaggaatagagtaaaggcaataatgag
gaggtaataaacgaatgaacctggggtaagcagaggcagaagcactttag
ccagatgatggtatttggcaagaagtgaggactgcacaggagaggttgag
ctaccacagttgactaatccttggaatcctgcagaccaccactgtataag
ccaagttttgcattgctaggataagagatctgactaactcacaggaagaa
gatttactcaggtttatatttcagagaatcccatatgctaggtgctaagt
ggggtagagcggttcatatcacagcagggagaaggggtggggctcatatt
cagttgagtttctttattttatttctttaatttgactgaggtcttcccag
tctatggagaggatctcctcactcttagagtgggttttgtccctcagtta
atctcgtgacacccacaaaggtgtcccactaatcttctaggtgattttga
tgcagtcaagtcatcaggaaagattaatttgtcacaggtctcattgtggt
tggccaattgaaggactgacatatagattctgataactcagtataaaata
aaacactgggaggagacttagatgctacaaggactattctaactaagtat
ttaaatatttaaaaaccttgaataactaacctagctggggttggcttgta
tcggtaagttgcctgcttgctaacgaagagatataatctatatacaatcc
tcagctcccatgggttaaaatggcctcttggtacat
gaattcatctaacatcttgcctgaatgagatttgccttaaaatactctag
aaaattggaaaggtttaggagatgaaaccaaattgacaaaacactgaaag
gcattgtgtctgggtggccaggtgcacagcgtttatccttttcccactgt
gcttgtgtgcatttggaagtgtataaatgaggagttaatggcaaagcacc
tgtctggggcagtgaataagcagagaacccagtattcacacctggggagg
tcacactctgtaagtcaagttcattatgtacatgctgccgactgcctcct
catgagaatcatatgtcaccaatgaggttgcattattgatttctgcatat
atgtgatcaacatacctgacagaagtgacattagagaagaataaaaaatt
tcctcgtggctacagagagttccagtccattgctgtaggcaaagcatgtg
gaaaggctcagtctgtggcagcaggagcacacaaccacaggggtgtatac
agcaggggctgttcacatcatggaccatgaagcagagagtgaggtaggaa
acaggggcagccttcctagccttcctctagctaggccctacttcctaaga
ttccacaaccttctcaaatagaatgttcagatatgaggccaagggggaca
gtgtgataccccagggagtagcagcagctcagggaagtgataggcggata
ggtaaagcctcattcttgatgggtgttggggagggagtggaaccatacac
aaaaatgttggtctctggtttctgactttttctccaaaccagctgtctga
attctagatcaatcggttgggcaagggagatggtatccttggattcttta
gaagtatagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_12185708_12186907
seq2: B6Ng01-055J21.b_50_1235 (reverse)

seq1  ATGTACCACAGAGCCCATTTTTTAACCATGGGAGCTGAAGATGTGAATTT  50
      |||||||| |||| ||| |||| | ||||||||||||| ||| || || |
seq2  ATGTACCA-AGAGGCCA-TTTTAACCCATGGGAGCTGAGGAT-TGTATAT  47

seq1  AG-CTATATC-CTTCTGTTTGCAAGGCAGGCACTTTACCGATAC-AGCCA  97
      ||  |||||| |||| ||| |||| |||||||  |||||||||| |||||
seq2  AGATTATATCTCTTC-GTTAGCAA-GCAGGCAACTTACCGATACAAGCCA  95

seq1  AACCCCCAGCTAGTTTAGTTATTTTAAAGGTTTTTAAATATTTTTAAATT  147
      |  |||||||||| |||||||  || ||||||||||||||  ||||||| 
seq2  A--CCCCAGCTAGGTTAGTTA--TTCAAGGTTTTTAAATA--TTTAAAT-  138

seq1  AACTTTAGTTAGATTAGTTCTTTGTAGCATCTAAGTCT-CTTCCAGTGTT  196
       || ||||||||| ||| || ||||||||||||||||| || ||||||||
seq2  -AC-TTAGTTAGAATAG-TCCTTGTAGCATCTAAGTCTCCTCCCAGTGTT  185

seq1  TTTATTTTTATACTGAGTTATCAGAATCTATATTGTCATGTCCTTC-AGT  245
      ||   ||||||||||||||||||||||||||| ||||| ||||||| | |
seq2  TT--ATTTTATACTGAGTTATCAGAATCTATA-TGTCA-GTCCTTCAATT  231

seq1  GGCCAACCACAATGAGACCTTGTGAC-AATTAATCTTTCCTGATGACTTG  294
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  GGCCAACCACAATGAGACC-TGTGACAAATTAATCTTTCCTGATGACTTG  280

seq1  ACTGCATCAAAATCACCTAGAAGATTAGTGGGACACCTTTGTGGGTGTCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATCAAAATCACCTAGAAGATTAGTGGGACACCTTTGTGGGTGTCA  330

seq1  CGAGATTAACTGAGGGACAAAACCCACTCTAAGAGTGAGGAGATCCTCTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATTAACTGAGGGACAAAACCCACTCTAAGAGTGAGGAGATCCTCTC  380

seq1  CATAGACTGGGAAGACCTCAGTCAAATTAAAGAAATAAAATAAAGAAACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACTGGGAAGACCTCAGTCAAATTAAAGAAATAAAATAAAGAAACT  430

seq1  CAACTGAATATGAGCCCCACCCCTTCTCCCTGCTGTGATATGAACCGCTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAATATGAGCCCCACCCCTTCTCCCTGCTGTGATATGAACCGCTC  480

seq1  TACCCCACTTAGCACCTAGCATATGGGATTCTCTGAAATATAAACCTGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCACTTAGCACCTAGCATATGGGATTCTCTGAAATATAAACCTGAG  530

seq1  TAAATCTTCTTCCTGTGAGTTAGTCAGATCTCTTATCCTAGCAATGCAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTCTTCCTGTGAGTTAGTCAGATCTCTTATCCTAGCAATGCAAA  580

seq1  ACTTGGCTTATACAGTGGTGGTCTGCAGGATTCCAAGGATTAGTCAACTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCTTATACAGTGGTGGTCTGCAGGATTCCAAGGATTAGTCAACTG  630

seq1  TGGTAGCTCAACCTCTCCTGTGCAGTCCTCACTTCTTGCCAAATACCATC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCTCAACCTCTCCTGTGCAGTCCTCACTTCTTGCCAAATACCATC  680

seq1  ATCTGGCTAAAGTGCTTCTGCCTCTGCTTACCCCAGGTTCATTCGTTTAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTAAAGTGCTTCTGCCTCTGCTTACCCCAGGTTCATTCGTTTAT  730

seq1  TACCTCCTCATTATTGCCTTTACTCTATTCCTACTGTATTATTTCACTGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCTCATTATTGCCTTTACTCTATTCCTACTGTATTATTTCACTGA  780

seq1  GGGGGGTGTTTCCATTGTGATGCAGAAATCTTACCATTTGAACCCATCAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTGTTTCCATTGTGATGCAGAAATCTTACCATTTGAACCCATCAA  830

seq1  AAGCACATTAGCATGTAGTAGCAGGTAGGTTAGGAAATTCTTCAGAGGGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATTAGCATGTAGTAGCAGGTAGGTTAGGAAATTCTTCAGAGGGG  880

seq1  ACTTGCTTCCTATTTTTATGCTTTATGGGAGAAGATATATTGAAGTCAGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTCCTATTTTTATGCTTTATGGGAGAAGATATATTGAAGTCAGT  930

seq1  GGCCATGAACTTTAACAGCATGTGTAGGTGGAGGGAAGACCTCAGTTTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGAACTTTAACAGCATGTGTAGGTGGAGGGAAGACCTCAGTTTCT  980

seq1  GCTCAGTGTATTCCAATTAGCGTGCTGTAACATGACAATGAAAATGATAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGTATTCCAATTAGCGTGCTGTAACATGACAATGAAAATGATAA  1030

seq1  ATCACTCTATAATGTATTGCTGATCTTTCTGGAATTCAGAGCCTACTAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCTATAATGTATTGCTGATCTTTCTGGAATTCAGAGCCTACTAGA  1080

seq1  AGAGACTGATGCGAGGCGAACGAAATGCTTTAAACAGAGGGTGATAATGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGATGCGAGGCGAACGAAATGCTTTAAACAGAGGGTGATAATGA  1130

seq1  TTTTCTTTGAGGCAGAGAAGCCAGTTGACCAGTGTATGAATCTTCAGCAG  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGAGGCAGAGAAGCCAGTTGACCAGTGTATGAATCTTCAGCAG  1180

seq1  GAATTC  1200
      ||||||
seq2  GAATTC  1186

seq1: chr16_12004055_12004911
seq2: B6Ng01-055J21.g_68_927

seq1  GAATTCATCTAACATCTTGCCTGAATGAGATTTGCCTTAAAATACTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTAACATCTTGCCTGAATGAGATTTGCCTTAAAATACTCTAG  50

seq1  AAAATTGGAAAGGTTTAGGAGATGAAACCAAATTGACAAAACACTGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGAAAGGTTTAGGAGATGAAACCAAATTGACAAAACACTGAAAG  100

seq1  GCATTGTGTCTGGGTGGCCAGGTGCACAGCGTTTATCCTTTTCCCACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGTCTGGGTGGCCAGGTGCACAGCGTTTATCCTTTTCCCACTGT  150

seq1  GCTTGTGTGCATTTGGAAGTGTATAAATGAGGAGTTAATGGCAAAGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTGCATTTGGAAGTGTATAAATGAGGAGTTAATGGCAAAGCACC  200

seq1  TGTCTGGGGCAGTGAATAAGCAGAGAACCCAGTATTCACACCTGGGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGGGCAGTGAATAAGCAGAGAACCCAGTATTCACACCTGGGGAGG  250

seq1  TCACACTCTGTAAGTCAAGTTCATTATGTACATGCTGCCGACTGCCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTCTGTAAGTCAAGTTCATTATGTACATGCTGCCGACTGCCTCCT  300

seq1  CATGAGAATCATATGTCACCAATGAGGTTGCATTATTGATTTCTGCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAATCATATGTCACCAATGAGGTTGCATTATTGATTTCTGCATAT  350

seq1  ATGTGATCAACATACCTGACAGAAGTGACATTAGAGAAGAATAAAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATCAACATACCTGACAGAAGTGACATTAGAGAAGAATAAAAAATT  400

seq1  TCCTCGTGGCTACAGAGAGTTCCAGTCCATTGCTGTAGGCAAAGCATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGTGGCTACAGAGAGTTCCAGTCCATTGCTGTAGGCAAAGCATGTG  450

seq1  GAAAGGCTCAGTCTGTGGCAGCAGGAGCACACAACCACAGGGGTGTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTCAGTCTGTGGCAGCAGGAGCACACAACCACAGGGGTGTATAC  500

seq1  AGCAGGGGCTGTTCACATCATGGACCATGAAGCAGAGAGTGAGGTAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGCTGTTCACATCATGGACCATGAAGCAGAGAGTGAGGTAGGAA  550

seq1  ACAGGGGCAGCCTTCCTAGCCTTCCTCTAGCTAGGCCCTACTTCCTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGCAGCCTTCCTAGCCTTCCTCTAGCTAGGCCCTACTTCCTAAGA  600

seq1  TTCCACAACCTTCTCAAATAGAATGTTCAGATATGAGGCCAAGGGGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAACCTTCTCAAATAGAATGTTCAGATATGAGGCCAAGGGGGACA  650

seq1  GTGTGATACCCCAGGGAGTAGCAGCAGCTCAGGGAAGTGATAGGCGGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATACCCCAGGGAGTAGCAGCAGCTCAGGGAAGTGATAGGCGGATA  700

seq1  GGTAAAGCCTCATTCTTGATGGGTGTTGGGGAGGGAGTGGAACCATACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGCCTCATTCTTGATGGGTGTTGGGGAGGGAGTGGAACCATACAC  750

seq1  AAAAATGTTGGTCTCTGGTTTCTGAC-TTTTCTCCAAACCAGCTGTCTG-  798
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  AAAAATGTTGGTCTCTGGTTTCTGACTTTTTCTCCAAACCAGCTGTCTGA  800

seq1  ATTCTAGATCAATCGGTTGGGCAAGGTAGATGGTATTCTTGGATCCTTT-  847
      |||||||||||||||||||||||||| ||||||||| ||||||| |||| 
seq2  ATTCTAGATCAATCGGTTGGGCAAGGGAGATGGTATCCTTGGATTCTTTA  850

seq1  GAAGTATAGT  857
      ||||||||||
seq2  GAAGTATAGT  860