BAC Information

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BAC

Clone NameB6Ng01-056G11
Chromosome16 (Build37)
Map Location 37,709,772 - 37,784,425
singlet/doubletdoublet
Overlap geneFstl1
Upstream geneIldr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709
Downstream geneLOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056G11.bB6Ng01-056G11.g
ACCDH878569DH878570
length3581,093
definitionDH878569|Mus musculus domesticus DNA, BAC clone: B6Ng01-056G11, 5' end.DH878570|Mus musculus domesticus DNA, BAC clone: B6Ng01-056G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,709,772 - 37,710,129)(37,783,317 - 37,784,425)
sequence
acttgagtggtacaattagattacatggtaattctattttcaaactctct
gaggaagctcttcactgatttccatagtggctgcaccagtttagagtcca
ttagtcgtaggtaaagggtactctttgtacacatcttcccagcattcttt
gtttcttttctcagtgatagccttatgcagtgaaatgtaatctcaaaaca
cattacaactgtttctgactactttctctctctctctctttctctctctc
tctctcccccccctctctctctcccgccctccctccctccctccccctct
cttcattcttttctctccctctatctctgaggcagcttatgtatgtcatc
ttattcca
gaattcagatgcatataaatgctagacaggcatggcggtctccctacagc
cctgtactttgaaggcagagacaggaaacccttagagtaagatcactgtc
tagtcatatctctgagctctgggtgtaactgagactccttggctagaaag
gtggagaaggatagaggaaggcattcaacatcaaccttgggacgccacat
acatttacatacatgcccatgatgccccattaagtatccacacacatgtc
aatattgacccatacacataggtcacatgaccatacacatgagaaaaaag
ttaggattttgttctcatgcgacatgaagctaagatacattcaaaaaagc
ttagaaaatacagaaaagactggaacaaagaataaaattacccctatggg
taaggttttccaattcagcccagagtggtacccatggctgtgccctccct
tcttcaactacatgtctaggtagttctaattttacagctcttctaaataa
cataattggtatcttatgaagactctccttaaatgtaacaattagctaca
catccaaatacttacataacatctaaatcacgagactcctggagagagtg
agttaaccttttcactaatttgtaaaaattcattattgctaaaacatgga
ctaagaatctgccaaatgtcactagacaccaagatactgactaaaaactc
tctcttcaccaaggaatgatgaaatgcatgctggagcaaaccctttgaca
cacagttccactatgtgacatttttgccttgaactcagagcctttcctca
ccagctccctctgtcttcactgggggagtggctacctgagaatatcccac
tgtaaaaggtcatcaagctacatattataaatgtatggattttattaact
tagagacatttgagagctgggaaatggctcaaagttagagcacttgtctt
gtagagacgcagtttgattccagcacccacatggacgatacaccattcta
aactcctgttccaggggcaatttaccctttccggacttctaaggaaaagt
cacaagaactacatgcccgtgaatattcctagaattaaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_37709772_37710129
seq2: B6Ng01-056G11.b_50_407

seq1  ACTTGAGTGGTACAATTAGATTACATGGTAATTCTATTTTCAAACTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGTGGTACAATTAGATTACATGGTAATTCTATTTTCAAACTCTCT  50

seq1  GAGGAAGCTCTTCACTGATTTCCATAGTGGCTGCACCAGTTTAGAGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGCTCTTCACTGATTTCCATAGTGGCTGCACCAGTTTAGAGTCCA  100

seq1  TTAGTCGTAGGTAAAGGGTACTCTTTGTACACATCTTCCCAGCATTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCGTAGGTAAAGGGTACTCTTTGTACACATCTTCCCAGCATTCTTT  150

seq1  GTTTCTTTTCTCAGTGATAGCCTTATGCAGTGAAATGTAATCTCAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTCTCAGTGATAGCCTTATGCAGTGAAATGTAATCTCAAAACA  200

seq1  CATTACAACTGTTTCTGACTACTTTCTCTCTCTCTCTCTTTCTCTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAACTGTTTCTGACTACTTTCTCTCTCTCTCTCTTTCTCTCTCTC  250

seq1  TCTCTCCCCCCCCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCCCCCC  300
      ||||||||||||||||||||||||| ||||||||||||||||||||| | 
seq2  TCTCTCCCCCCCCTCTCTCTCTCCCGCCCTCCCTCCCTCCCTCCCCCTCT  300

seq1  CATCATTCTTTTTTCACCAAGCCACCATGAGGCAGCTCATGTATGTCATC  350
      | |||||||||| || ||      |  |||||||||| ||||||||||||
seq2  CTTCATTCTTTTCTCTCCCTCTATCTCTGAGGCAGCTTATGTATGTCATC  350

seq1  TTACTCCA  358
      ||| ||||
seq2  TTATTCCA  358

seq1: chr16_37783317_37784425
seq2: B6Ng01-056G11.g_69_1161 (reverse)

seq1  TTTATTTTATGTCTATGAATATTCTACCTGCATGTATGTCTTGTGTACTT  50
      ||||||| || |||| |||||||| ||  |||||||  ||||||| ||||
seq2  TTTATTTAAT-TCTAGGAATATTC-ACGGGCATGTAGTTCTTGTG-ACTT  47

seq1  TTTCCCTTTAGAAGTCAGAAAAGGGTATA-TGCCCCTGGAACAGGAGTTT  99
      ||   | ||||||||| | |||||||| | ||||||||||||||||||||
seq2  TT---CCTTAGAAGTCCGGAAAGGGTAAATTGCCCCTGGAACAGGAGTTT  94

seq1  AGAGATGGTTGTAATCGTCCATGTGGGTGCTGGGAATCAAACCTGCGTCT  149
      ||| |||| ||| |||||||||||||||||| ||||||||| ||||||| 
seq2  AGA-ATGG-TGT-ATCGTCCATGTGGGTGCT-GGAATCAAA-CTGCGTC-  138

seq1  TCTACAAGAACAAGTGCTCTTAACCTCTGAGCCATTTCCCCAGCTCTCAA  199
      |||||||| |||||||||||  | || |||||||||| ||||||||||||
seq2  TCTACAAG-ACAAGTGCTCT--AACTTTGAGCCATTT-CCCAGCTCTCAA  184

seq1  ATTGTCTCTAAGTTAATAAAATCCATACATTTATAATATGTAGCTTGATG  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TGTCTCTAAGTTAATAAAATCCATACATTTATAATATGTAGCTTGATG  233

seq1  ACCTTTTACAGTGGGATATTCTCAGGTAGCCACTCCCCCAGTGAAGACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTACAGTGGGATATTCTCAGGTAGCCACTCCCCCAGTGAAGACAG  283

seq1  AGGGAGCTGGTGAGGAAAGGCTCTGAGTTCAAGGCAAAAATGTCACATAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCTGGTGAGGAAAGGCTCTGAGTTCAAGGCAAAAATGTCACATAG  333

seq1  TGGAACTGTGTGTCAAAGGGTTTGCTCCAGCATGCATTTCATCATTCCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGTGTGTCAAAGGGTTTGCTCCAGCATGCATTTCATCATTCCTT  383

seq1  GGTGAAGAGAGAGTTTTTAGTCAGTATCTTGGTGTCTAGTGACATTTGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGAGAGAGTTTTTAGTCAGTATCTTGGTGTCTAGTGACATTTGGC  433

seq1  AGATTCTTAGTCCATGTTTTAGCAATAATGAATTTTTACAAATTAGTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTAGTCCATGTTTTAGCAATAATGAATTTTTACAAATTAGTGAA  483

seq1  AAGGTTAACTCACTCTCTCCAGGAGTCTCGTGATTTAGATGTTATGTAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAACTCACTCTCTCCAGGAGTCTCGTGATTTAGATGTTATGTAAG  533

seq1  TATTTGGATGTGTAGCTAATTGTTACATTTAAGGAGAGTCTTCATAAGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGATGTGTAGCTAATTGTTACATTTAAGGAGAGTCTTCATAAGAT  583

seq1  ACCAATTATGTTATTTAGAAGAGCTGTAAAATTAGAACTACCTAGACATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTATGTTATTTAGAAGAGCTGTAAAATTAGAACTACCTAGACATG  633

seq1  TAGTTGAAGAAGGGAGGGCACAGCCATGGGTACCACTCTGGGCTGAATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGAAGAAGGGAGGGCACAGCCATGGGTACCACTCTGGGCTGAATTG  683

seq1  GAAAACCTTACCCATAGGGGTAATTTTATTCTTTGTTCCAGTCTTTTCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTTACCCATAGGGGTAATTTTATTCTTTGTTCCAGTCTTTTCTG  733

seq1  TATTTTCTAAGCTTTTTTGAATGTATCTTAGCTTCATGTCGCATGAGAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTAAGCTTTTTTGAATGTATCTTAGCTTCATGTCGCATGAGAAC  783

seq1  AAAATCCTAACTTTTTTCTCATGTGTATGGTCATGTGACCTATGTGTATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTAACTTTTTTCTCATGTGTATGGTCATGTGACCTATGTGTATG  833

seq1  GGTCAATATTGACATGTGTGTGGATACTTAATGGGGCATCATGGGCATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATATTGACATGTGTGTGGATACTTAATGGGGCATCATGGGCATGT  883

seq1  ATGTAAATGTATGTGGCGTCCCAAGGTTGATGTTGAATGCCTTCCTCTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATGTATGTGGCGTCCCAAGGTTGATGTTGAATGCCTTCCTCTAT  933

seq1  CCTTCTCCACCTTTCTAGCCAAGGAGTCTCAGTTACACCCAGAGCTCAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCACCTTTCTAGCCAAGGAGTCTCAGTTACACCCAGAGCTCAGA  983

seq1  GATATGACTAGACAGTGATCTTACTCTAAGGGTTTCCTGTCTCTGCCTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGACTAGACAGTGATCTTACTCTAAGGGTTTCCTGTCTCTGCCTTC  1033

seq1  AAAGTACAGGGCTGTAGGGAGACCGCCATGCCTGTCTAGCATTTATATGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACAGGGCTGTAGGGAGACCGCCATGCCTGTCTAGCATTTATATGC  1083

seq1  ATCTGAATTC  1109
      ||||||||||
seq2  ATCTGAATTC  1093