BAC Information

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BAC

Clone NameB6Ng01-056M05
Chromosome16 (Build37)
Map Location 35,587,273 - 35,708,184
singlet/doubletdoublet
Overlap geneSema5b, Dirc2
Upstream geneRopn1, Ccdc14, Mylk, Ptplb, Adcy5, Sec22a, Pdia5, EG546663
Downstream geneHspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056M05.bB6Ng01-056M05.g
ACCDH878823DH878824
length1,079824
definitionDH878823|Mus musculus domesticus DNA, BAC clone: B6Ng01-056M05, 5' end.DH878824|Mus musculus domesticus DNA, BAC clone: B6Ng01-056M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,707,098 - 35,708,184)(35,587,273 - 35,588,092)
sequence
gaattcatcaacagtgtttgaccacaggaggactttacctttctggtgac
agctcttcagagactccttgtgagcgtgggccgagagagctgcttggttt
aagggttttctaacaaggtctgccttctccaaatgatgctctccaggtga
atcccagctctgcctttgtaccaagcttggtaaagatcagtggattctgt
tgtctccttccaagacctgtacccagtcccctctcgttagagtttcattt
gccctgttagttcttatgattattgtaaacattatattttaattcacctg
attataatttcatgtagggatatagagccccttcaaaaatataaacatag
atagtatttttggctctttgttttgtttttgttatagtttgatttgttct
gtcttgagacaggtctctagcccaaattgtgttgagaccctctatggagt
ccaggctggctttgaactcaaatctcctggctctacctcctgagtgccag
gtttacagtatgagccagaatgttaaagtggaaatatttctaattttgtt
tcctaaaaccatctaattccatcagtttgtggtcctagattaagtagtag
cacttgctggtccctgtgtgctggaattttttttttgtcatttatttaag
tacttttttgttctaaactcctagctgatgtgtgcttgggtctgtagttc
tttctgccctgattaccccggtggtaatctgaccagtcaataaatgattg
tacattggaaatagaatatactatagaagcttccagtaaccttccatccc
cagcacacacacatgagtcatgagtgagtaaagaatgttaacgcgtgtgt
gactgacatcaaccagtagatagtcaacacgggttgttatgacatccagc
cacagatagtcaacatgggtgctgtgacatccagccagtagatagccaca
cagtgcttgacattcagccaatagatagtaacacgggtgcattgttatgc
ttatttttacaagcttctgagtgtggggctgaagctggagagttgcttcg
tgtaaagattgcatgttgctctctgaaga
gaattctcacattctcctggaaagggccacaaagtttgggggtgtttttg
tagtgggtggagcgaattccgctgagagatttttctgacttgccctgagt
cagactggtttctgccccttccagtctgtttctggaggaggctgcagagg
tgtctccacaatagaatgaggcattgggggtatctagcgcttatagccac
ctgagagctgtgtagcctggcaggatgctccagtgtaaacactcctgccc
tttcagtgcctctggtaagacctgggcagggattttcctgttgcttcacc
tgggtctccagaggaacagaatgccctaacatctctctcctgctgctggc
atttagcccattgctgggttaattcaagcaatactaataacctgtttgca
gggaggagacctcttgcagacccttaaatcctgctctctggggcactgat
aacagactaagaatcctgtctggcccccctgcagccatcaaacagtgtgc
tcaagtctgtgtggctggatgctgcaaaaacacggaaagaaacagcattt
gtgtttatcccctgatactggcatccaggaggagggccgaagcgatggtt
tcagtgtttagaagggctccctctctcctaccgcctgcccccatggcttc
cctttcctgagtcttctgtctctttcctcctctgttagatgtagggcgtc
agtctccccgcagatcgtccaatgccagcccatctggatctatcagatca
ggctccccattccttttttggctgtctctgtgagggcctggggcctatgg
gagacctctccggggcctctgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_35707098_35708184
seq2: B6Ng01-056M05.b_46_1124 (reverse)

seq1  TCTTCAG-GAGCAACATGCACTCTTTACCACTGAGCCACCTCTCCAGCCT  49
      ||||||| |||||||||||| |||||| ||| ||  || ||||||||| |
seq2  TCTTCAGAGAGCAACATGCAATCTTTA-CAC-GAAGCAACTCTCCAGCTT  48

seq1  CAGCCCCACACTCAAGAGACTTGTAAAAATAAAGCATAACATAGCACCCG  99
      ||||||||||||| |||  ||||||||||| ||||||||||  |||||||
seq2  CAGCCCCACACTC-AGAAGCTTGTAAAAAT-AAGCATAACAATGCACCCG  96

seq1  TGTTTACTATCTATTGGCTGGATGTCACAGCACCTGTGTTGACTATCTAC  149
      || ||||||||||||||||| |||||| |||| ||||| || ||||||||
seq2  TG-TTACTATCTATTGGCTGAATGTCA-AGCA-CTGTG-TGGCTATCTAC  142

seq1  TGGCTGGATGTCACAGCACCCATGTTGACTATCTGTTGGCTGGATGTCAT  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGCTGGATGTCACAGCACCCATGTTGACTATCTG-TGGCTGGATGTCAT  191

seq1  AAC-ACCCGTGTTGACTATCTACTGGCTGGATGTCAGTCACACACGCGTT  248
      ||| |||||||||||||||||||||| | |||||||||||||||||||||
seq2  AACAACCCGTGTTGACTATCTACTGG-TTGATGTCAGTCACACACGCGTT  240

seq1  AAGCATTCTTTACTCACTCATGACTCATGTGTGGTGTGCTGGGGATGGAA  298
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AA-CATTCTTTACTCACTCATGACTCATGTGT-GTGTGCTGGGGATGGAA  288

seq1  GGTTACTGGAAGCTTCTATAGTATATTCTATTTCCAATGTACAATCATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTGGAAGCTTCTATAGTATATTCTATTTCCAATGTACAATCATTT  338

seq1  ATTGACTGGTCAGATTACCACC-GGGTAATCAGGGCAGAAAGAACTACAG  397
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTGACTGGTCAGATTACCACCGGGGTAATCAGGGCAGAAAGAACTACAG  388

seq1  ACCCAAGCACACATCAGCTAGGAGTTTAGAACAAAAAAGTACTTAAATAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGCACACATCAGCTAGGAGTTTAGAACAAAAAAGTACTTAAATAA  438

seq1  ATGAC-AAGAAAAAATTCCAGCACACAGGGACCAGCAAGTGCTACTACTT  496
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAAAAAAAATTCCAGCACACAGGGACCAGCAAGTGCTACTACTT  488

seq1  AATCTAGGACCACAAACTGATGGAATTAGATGGTTTTAGGAAACAAAATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGGACCACAAACTGATGGAATTAGATGGTTTTAGGAAACAAAATT  538

seq1  AGAAATATTTCCACTTTAACATTCTGGCTCATACTGTAAACCTGGCACTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTTCCACTTTAACATTCTGGCTCATACTGTAAACCTGGCACTC  588

seq1  AGGAGGTAGAGCCAGGAGATTTGAGTTCAAAGCCAGCCTGGACTCCATAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTAGAGCCAGGAGATTTGAGTTCAAAGCCAGCCTGGACTCCATAG  638

seq1  AGGGTCTCAACACAATTTGGGCTAGAGACCTGTCTCAAGACAGAACAAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCAACACAATTTGGGCTAGAGACCTGTCTCAAGACAGAACAAAT  688

seq1  CAAACTATAACAAAAACAAAACAAAGAGCCAAAAATACTATCTATGTTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTATAACAAAAACAAAACAAAGAGCCAAAAATACTATCTATGTTTA  738

seq1  TATTTTTGAAGGGGCTCTATATCCCTACATGAAATTATAATCAGGTGAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGAAGGGGCTCTATATCCCTACATGAAATTATAATCAGGTGAAT  788

seq1  TAAAATATAATGTTTACAATAATCATAAGAACTAACAGGGCAAATGAAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATAATGTTTACAATAATCATAAGAACTAACAGGGCAAATGAAAC  838

seq1  TCTAACGAGAGGGGACTGGGTACAGGTCTTGGAAGGAGACAACAGAATCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACGAGAGGGGACTGGGTACAGGTCTTGGAAGGAGACAACAGAATCC  888

seq1  ACTGATCTTTACCAAGCTTGGTACAAAGGCAGAGCTGGGATTCACCTGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCTTTACCAAGCTTGGTACAAAGGCAGAGCTGGGATTCACCTGGA  938

seq1  GAGCATCATTTGGAGAAGGCAGACCTTGTTAGAAAACCCTTAAACCAAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCATTTGGAGAAGGCAGACCTTGTTAGAAAACCCTTAAACCAAGC  988

seq1  AGCTCTCTCGGCCCACGCTCACAAGGAGTCTCTGAAGAGCTGTCACCAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCTCGGCCCACGCTCACAAGGAGTCTCTGAAGAGCTGTCACCAGA  1038

seq1  AAGGTAAAGTCCTCCTGTGGTCAAACACTGTTGATGAATTC  1087
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAAGTCCTCCTGTGGTCAAACACTGTTGATGAATTC  1079

seq1: chr16_35587273_35588092
seq2: B6Ng01-056M05.g_71_894

seq1  GAATTCTCACATTCTCCTGGAAAGGGCCACAAAGTTTGGGGGTGTTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACATTCTCCTGGAAAGGGCCACAAAGTTTGGGGGTGTTTTTG  50

seq1  TAGTGGGTGGAGCGAATTCCGCTGAGAGATTTTTCTGACTTGCCCTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGTGGAGCGAATTCCGCTGAGAGATTTTTCTGACTTGCCCTGAGT  100

seq1  CAGACTGGTTTCTGCCCCTTCCAGTCTGTTTCTGGAGGAGGCTGCAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGTTTCTGCCCCTTCCAGTCTGTTTCTGGAGGAGGCTGCAGAGG  150

seq1  TGTCTCCACAATAGAATGAGGCATTGGGGGTATCTAGCGCTTATAGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCACAATAGAATGAGGCATTGGGGGTATCTAGCGCTTATAGCCAC  200

seq1  CTGAGAGCTGTGTAGCCTGGCAGGATGCTCCAGTGTAAACACTCCTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCTGTGTAGCCTGGCAGGATGCTCCAGTGTAAACACTCCTGCCC  250

seq1  TTTCAGTGCCTCTGGTAAGACCTGGGCAGGGATTTTCCTGTTGCTTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGCCTCTGGTAAGACCTGGGCAGGGATTTTCCTGTTGCTTCACC  300

seq1  TGGGTCTCCAGAGGAACAGAATGCCCTAACATCTCTCTCCTGCTGCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCCAGAGGAACAGAATGCCCTAACATCTCTCTCCTGCTGCTGGC  350

seq1  ATTTAGCCCATTGCTGGGTTAATTCAAGCAATACTAATAACCTGTTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCCCATTGCTGGGTTAATTCAAGCAATACTAATAACCTGTTTGCA  400

seq1  GGGAGGAGACCTCTTGCAGACCCTTAAATCCTGCTCTCTGGGGCACTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGACCTCTTGCAGACCCTTAAATCCTGCTCTCTGGGGCACTGAT  450

seq1  AACAGACTAAGAATCCTGTCTGGCCCCCCTGCAGCCATCAAACAGTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACTAAGAATCCTGTCTGGCCCCCCTGCAGCCATCAAACAGTGTGC  500

seq1  TCAAGTCTGTGTGGCTGGATGCTGCAAAAACACGGAAAGAAACAGCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTGTGTGGCTGGATGCTGCAAAAACACGGAAAGAAACAGCATTT  550

seq1  GTGTTTATCCCCTGATACTGGCATCCAGGAGGAGGGCCGAAGCGATGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATCCCCTGATACTGGCATCCAGGAGGAGGGCCGAAGCGATGGTT  600

seq1  TCAGTGTTTAGAAGGGCTCCCTCTCTCCTACCGCCTGCCCCCATGGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTTAGAAGGGCTCCCTCTCTCCTACCGCCTGCCCCCATGGCTTC  650

seq1  CCTTTCCTGAGTCTTCTGTCTCTTTCCTCCTCTGTTAGATGTAGGGCGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTGAGTCTTCTGTCTCTTTCCTCCTCTGTTAGATGTAGGGCGTC  700

seq1  AGTCT-CCCGCAGATCGTCCAATGCCAGCCCATCTGGATCTATCAGATCA  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCCGCAGATCGTCCAATGCCAGCCCATCTGGATCTATCAGATCA  750

seq1  GGCTCCCCATTCC-TTTTTGGCTGCCTCTGTGAGGGCCT-GGGCCCAGTG  797
      ||||||||||||| |||||||||| |||||||||||||| ||||| |  |
seq2  GGCTCCCCATTCCTTTTTTGGCTGTCTCTGTGAGGGCCTGGGGCCTATGG  800

seq1  GAGACCTCTCC-GGGCCTCTGTGC  820
      ||||||||||| ||||||||||||
seq2  GAGACCTCTCCGGGGCCTCTGTGC  824