BAC Information

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BAC

Clone NameB6Ng01-056N04
Chromosome16 (Build37)
Map Location 76,246,228 - 76,376,730
singlet/doubletdoublet
Overlap geneLOC100039457, Nrip1
Upstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik
Downstream geneLOC100039316, 1700063K16Rik, LOC665120, Usp25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056N04.bB6Ng01-056N04.g
ACCDH878866DH878867
length1,1441,096
definitionDH878866|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N04, 5' end.DH878867|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,246,228 - 76,247,389)(76,375,645 - 76,376,730)
sequence
gaattcaaaatcttaggaagctgtttctggtgatgctctgaacgtgaaaa
ccatacatcacctttagaggcatggttctgctcatttgaatacagagatg
ttgtcatcttaaactcaagctgggtcatctggctctgtttcttctgcggg
gtctgaatcagtgccatattcttctcagaatcaatatcagaagacatttc
caaggcaccacagaattatgttggttcttgtttatctctacatatgtgtc
catgtcaacatgattaccggcagagtggcaaggagccttgggtctttaaa
cacacccaagaaaggcatgtggtatggtataaaaattggtttaaggcata
aactagtgtggttagaaaagtaccggaaattcacccattttagtgtttgg
ttttcttcaaactctccatgcaggacactgaggtcttgtcttaagaaggc
taccacagatcaaaacatcattttgaattctttggaaagacaatcttcac
ttcctgtggcgcactctttcactatgtggtaagacatctgcattgtttaa
gtctcaattttatttgcaaacaatgaacagaggttggctatgactcgcag
gaacaacacaaatacgaaacagggtaacagcatgaagtagacactatagg
tgctttctctgagtgtttactttcaaaggcactaatactttgtaagcttt
caatatcattaggtcttacactttgaagaatttgagatgaactctccatc
ttctatatctaagtttaacaagtgattgtcacgtgccagttatatttgct
atgtatttgtatatttcattaccaaatgaaaatagctccacagaacttaa
tcatttatgtttagcaggaaacatcgctgttcaacatttagtttatcaga
aagtaatgaataaaatacggctaacccccttataaactcaagagatatca
tattatggtataaaactttacagttctttcatcttaggaaagttcaactg
cagatacatgacagaattttatttcttatattattacatcatctctgtct
actgaaatatactattttacactcatgatatatactgtggactacttgta
tttcttaatttctcatgatcttaatggactttcatttaatttat
gaattccagtggcctgagaaacattaagaaagtttgtttgtttgtttgtt
tgtttgtttatttatattttatttgccttggtgttttgcctgcatgtatg
tctgtgtaagggtgtcagatccaggagttacagacagatagatgtgaact
gccatgtgggtgctgggaattgatcccgagtcctctgacagagtagacgg
tgttcttaagcactgagccatgtctctagagccaagtgatagactttgta
taacacataggtttaggtctataaaccgaatgacatcttttccattacac
acgcttcttatgagaactggcctccaaataacaaatcactgcagagacat
ttgtacattccctatactccaatatccacataatgattccccttagcctg
gacacttgtatttttataaatataaaattattaaatacacagtaggagct
gggagagaccagtcagcatgtatgcgactccattcctgggaacagagaaa
agttgtgtgtatttgtgtggctgtatgtgctgtgcacacgtgcagagttc
agaggataactttatggagcgtgtttccaaggatcagattcaggtagcca
ggcttatgcgctaagtgcttttacctttgagccatcttactgtctcagta
ctgattttctttctaacagaaagaataaactcaaaatgatcttctcacaa
ttagcaattctacataagctatgcagttcattcaacacacgtgtgttatc
aagaagagtccaggattttacttattacattgggtgggggtggtctgctt
tggtatatcgtctaatatatagctgttggagttttagcactgatactggg
caagcagaacaaacgagatttagcttgctggggcaatctcggagatctaa
acctccttaaaaagtgagaatgtttttcaagtgacactgagtgggcttca
aatatctgtctccacgtctgtcactgcagccctcatgggagctcacttct
cctacaggcatttattacttagcttaccttaatttatgtgacaagctact
ggattctcatttgtgttccataaagaacgtgccatctaagaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_76246228_76247389
seq2: B6Ng01-056N04.b_47_1190

seq1  GAATTCAAAATCTTAGGAAGCTGTTTCTGGTGATGCTCTGAACGTGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATCTTAGGAAGCTGTTTCTGGTGATGCTCTGAACGTGAAAA  50

seq1  CCATACATCACCTTTAGAGGCATGGTTCTGCTCATTTGAATACAGAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACATCACCTTTAGAGGCATGGTTCTGCTCATTTGAATACAGAGATG  100

seq1  TTGTCATCTTAAACTCAAGCTGGGTCATCTGGCTCTGTTTCTTCTGCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATCTTAAACTCAAGCTGGGTCATCTGGCTCTGTTTCTTCTGCGGG  150

seq1  GTCTGAATCAGTGCCATATTCTTCTCAGAATCAATATCAGAAGACATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAATCAGTGCCATATTCTTCTCAGAATCAATATCAGAAGACATTTC  200

seq1  CAAGGCACCACAGAATTATGTTGGTTCTTGTTTATCTCTACATATGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCACCACAGAATTATGTTGGTTCTTGTTTATCTCTACATATGTGTC  250

seq1  CATGTCAACATGATTACCGGCAGAGTGGCAAGGAGCCTTGGGTCTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAACATGATTACCGGCAGAGTGGCAAGGAGCCTTGGGTCTTTAAA  300

seq1  CACACCCAAGAAAGGCATGTGGTATGGTATAAAAATTGGTTTAAGGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCAAGAAAGGCATGTGGTATGGTATAAAAATTGGTTTAAGGCATA  350

seq1  AACTAGTGTGGTTAGAAAAGTACCGGAAATTCACCCATTTTAGTGTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTGTGGTTAGAAAAGTACCGGAAATTCACCCATTTTAGTGTTTGG  400

seq1  TTTTCTTCAAACTCTCCATGCAGGACACTGAGGTCTTGTCTTAAGAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCAAACTCTCCATGCAGGACACTGAGGTCTTGTCTTAAGAAGGC  450

seq1  TACCACAGATCAAAACATCATTTTGAATTCTTTGGAAAGACAATCTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGATCAAAACATCATTTTGAATTCTTTGGAAAGACAATCTTCAC  500

seq1  TTCCTGTGGCGCACTCTTTCACTATGTGGTAAGACATCTGCATTGTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGGCGCACTCTTTCACTATGTGGTAAGACATCTGCATTGTTTAA  550

seq1  GTCTCAATTTTATTTGCAAACAATGAACAGAGGTTGGCTATGACTCGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAATTTTATTTGCAAACAATGAACAGAGGTTGGCTATGACTCGCAG  600

seq1  GAACAACACAAATACGAAACAGGGTAACAGCATGAAGTAGACACTATAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACACAAATACGAAACAGGGTAACAGCATGAAGTAGACACTATAGG  650

seq1  TGCTTTCTCTGAGTGTTTACTTTCAAAGGCACTAATACTTTGTAAGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTCTGAGTGTTTACTTTCAAAGGCACTAATACTTTGTAAGCTTT  700

seq1  CAATATCATTAGGTCTTACACTTTGAAGAATTTGAGATGAACTCTCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCATTAGGTCTTACACTTTGAAGAATTTGAGATGAACTCTCCATC  750

seq1  TTCTATATCTAAGTTTAACAAGTGATTGTCACGTGCCAGTTATATTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATCTAAGTTTAACAAGTGATTGTCACGTGCCAGTTATATTTGCT  800

seq1  ATGTATTTGTATATTTCATTACCAAATGAAAATAGCTCCACAGAACTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTGTATATTTCATTACCAAATGAAAATAGCTCCACAGAACTTAA  850

seq1  TCATTTATGTTTAGCAGGAAACATCGCTGTTCAACATTTAGTTTATCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATGTTTAGCAGGAAACATCGCTGTTCAACATTTAGTTTATCAGA  900

seq1  AAGTAATGAATAAAAATACGGCTAACCCCCTTATAAACTCAAGAGATATC  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGAAT-AAAATACGGCTAACCCCCTTATAAACTCAAGAGATATC  949

seq1  ATATTATGGTATAAAACTTTAACAAGTTCTTTCAATCCTTTAAGGGAAAG  1000
      |||||||||||||||||||||   ||||||||| |||  |||  ||||||
seq2  ATATTATGGTATAAAACTTTA--CAGTTCTTTC-ATC--TTA--GGAAAG  992

seq1  TTCAAACTGCAGATACATTGACAAGAATTTTTAATTTTCTTTATATTATT  1050
      ||| ||||||||||||| |||| ||||||||  ||||   ||||||||||
seq2  TTC-AACTGCAGATACA-TGAC-AGAATTTT--ATTT--CTTATATTATT  1035

seq1  ACATCATCTTCTGTCTACTGAAATATACTATTTTACAACTCATGATATAT  1100
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  ACATCATC-TCTGTCTACTGAAATATACTATTTTAC-ACTCATGATATAT  1083

seq1  AACTGT-GACTACTTGTATTTCTATATTTCTCTATGATCTATATGGGACT  1149
       ||||| ||||||||||||||||  ||||||| ||||||| ||  |||| 
seq2  -ACTGTGGACTACTTGTATTTCTTAATTTCTC-ATGATCT-TAATGGAC-  1129

seq1  TTTCATTT--TTTAT  1162
      ||||||||  |||||
seq2  TTTCATTTAATTTAT  1144

seq1: chr16_76375645_76376730
seq2: B6Ng01-056N04.g_68_1163 (reverse)

seq1  ------------------TTTCTTCTCTGGAACAC-ATTGAGAGTCCAGA  31
                         ||||| | |||||||| | ||||| ||||| 
seq2  TTTCTTCTTAGATGGCACGTTCTT-TATGGAACACAAATGAGAATCCAG-  48

seq1  TAGCTTGTCACAATTAATATAAAGGTAAGCTAAGTAATAAATGGCCTGTA  81
      ||||||||||||  ||| || ||||||||||||||||||||| |||||||
seq2  TAGCTTGTCACA--TAA-ATTAAGGTAAGCTAAGTAATAAAT-GCCTGTA  94

seq1  GGAG-AGTGAAGCTCCCATGGAGGGCTGCAGTGACAGACGTGGAGACAGA  130
      |||| |||| ||||||||| ||||||||||||||||||||||||||||||
seq2  GGAGAAGTG-AGCTCCCAT-GAGGGCTGCAGTGACAGACGTGGAGACAGA  142

seq1  TATTTG-AGCCCACTCAAGTGTCACTCTGAAAAACATTCTCACTTTTTAA  179
      |||||| ||||||||| ||||||||| |||||||||||||||||||||||
seq2  TATTTGAAGCCCACTC-AGTGTCACT-TGAAAAACATTCTCACTTTTTAA  190

seq1  GGAGGTTTTAGATCTCCGAGATTGCCCCAGCAAGCTAAATCTCGTTTGTT  229
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGG-TTTAGATCTCCGAGATTGCCCCAGCAAGCTAAATCTCGTTTGTT  239

seq1  CTGCTTGCCCAGTATCAGTGCTAAAACTCCAACAGCTATATATTAGACGA  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCCCAGTATCAGTGCTAAAACTCCAACAGCTATATATTAGACGA  289

seq1  TATACCAAAGCAGACCACCCCCACCCAATGTAATAAGTAAAATCCTGGAC  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAAAGCAGACCACCCCCACCCAATGTAATAAGTAAAATCCTGGAC  339

seq1  TCTTCTTGATAACACACGTGTGTTGAATGAACTGCATAGCTTATGTAGAA  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGATAACACACGTGTGTTGAATGAACTGCATAGCTTATGTAGAA  389

seq1  TTGCTAATTGTGAGAAGATCATTTTGAGTTTATTCTTTCTGTTAGAAAGA  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAATTGTGAGAAGATCATTTTGAGTTTATTCTTTCTGTTAGAAAGA  439

seq1  AAATCAGTACTGAGACAGTAAGATGGCTCAAAGGTAAAAGCACTTAGCGC  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGTACTGAGACAGTAAGATGGCTCAAAGGTAAAAGCACTTAGCGC  489

seq1  ATAAGCCTGGCTACCTGAATCTGATCCTTGGAAACACGCTCCATAAAGTT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCTGGCTACCTGAATCTGATCCTTGGAAACACGCTCCATAAAGTT  539

seq1  ATCCTCTGAACTCTGCACGTGTGCACAGCACATACAGCCACACAAATACA  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGAACTCTGCACGTGTGCACAGCACATACAGCCACACAAATACA  589

seq1  CACAACTTTTCTCTGTTCCCAGGAATGGAGTCGCATACATGCTGACTGGT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTTTCTCTGTTCCCAGGAATGGAGTCGCATACATGCTGACTGGT  639

seq1  CTCTCCCAGCTCCTACTGTGTATTTAATAATTTTATATTTATAAAAATAC  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCAGCTCCTACTGTGTATTTAATAATTTTATATTTATAAAAATAC  689

seq1  AAGTGTCCAGGCTAAGGGGAATCATTATGTGGATATTGGAGTATAGGGAA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCCAGGCTAAGGGGAATCATTATGTGGATATTGGAGTATAGGGAA  739

seq1  TGTACAAATGTCTCTGCAGTGATTTGTTATTTGGAGGCCAGTTCTCATAA  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAATGTCTCTGCAGTGATTTGTTATTTGGAGGCCAGTTCTCATAA  789

seq1  GAAGCGTGTGTAATGGAAAAGATGTCATTCGGTTTATAGACCTAAACCTA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGTGTGTAATGGAAAAGATGTCATTCGGTTTATAGACCTAAACCTA  839

seq1  TGTGTTATACAAAGTCTATCACTTGGCTCTAGAGACATGGCTCAGTGCTT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTATACAAAGTCTATCACTTGGCTCTAGAGACATGGCTCAGTGCTT  889

seq1  AAGAACACCGTCTACTCTGTCAGAGGACTCGGGATCAATTCCCAGCACCC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACCGTCTACTCTGTCAGAGGACTCGGGATCAATTCCCAGCACCC  939

seq1  ACATGGCAGTTCACATCTATCTGTCTGTAACTCCTGGATCTGACACCCTT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCAGTTCACATCTATCTGTCTGTAACTCCTGGATCTGACACCCTT  989

seq1  ACACAGACATACATGCAGGCAAAACACCAAGGCAAATAAAATATAAATAA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACATACATGCAGGCAAAACACCAAGGCAAATAAAATATAAATAA  1039

seq1  ACAAACAAACAAACAAACAAACAAACTTTCTTAATGTTTCTCAGGCCACT  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAACAAACAAACTTTCTTAATGTTTCTCAGGCCACT  1089

seq1  GGAATTC  1086
      |||||||
seq2  GGAATTC  1096