BAC Information

Click to search

BAC

Clone NameB6Ng01-057C22
Chromosome16 (Build37)
Map Location 66,273,950 - 66,389,696
singlet/doubletdoublet
Overlap genenone
Upstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057C22.bB6Ng01-057C22.g
ACCDH879128DH879129
length5191,100
definitionDH879128|Mus musculus domesticus DNA, BAC clone: B6Ng01-057C22, 5' end.DH879129|Mus musculus domesticus DNA, BAC clone: B6Ng01-057C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,389,172 - 66,389,696)(66,273,950 - 66,275,084)
sequence
ttaaaaggtataaatgtgatggtattaggtggtaggtttctttggaggtc
attggtttatcaagacccaggtggatggagatgagatccaagagcataaa
accatcatccctgttccctggagagaatccacagacaagatggcaaggta
gcagggtctcagcagtcactgaatgtgctcagatctctcgattttagact
ttccagacccaggtgtgagaaacaaacccctggttgttataaaccacccc
gctgatgttattttatttacgcagtacaaagaaacatttacttatgaaac
ctgaaaaaaaaaatggcttaattcttttataccttctagagtcagggatc
agtaaatagattagctgcattttctctcagatctcaatgtgtgaaatcaa
aatgctagacatgacccactgtcatctggagtttagtattctttttaaaa
tctttcatacaattggaaaactcttaaaggtttctatttttctagcttta
tttgtgtgtgtgtgtgtgt
gaattcccttctcagtacattcatggctatgttctctattttcatcatag
ccgtatattgtactttggcgcacaatattttcccttgtggttgaatgcaa
aacagctgtgtattctgccttctgttgttgggttgggtgctgactaaata
atctaagacagcctaaattttgagttgttcctcactaaaagggacaggca
gtgctaaaaaaggaatctatttaaaaaacaggtcttttgttttttggttt
tttgttctttttttgtttttgttttttgtttttatttttttcagtatatt
gagggtatagatgcagctggagattaagccagaggcttcagatatcctaa
gcacatattttaacattaaagccctaactcagtatttttaatgtctttga
aaacaagttttggttttacagatatttattcattcattttattttgtttg
catttgatcccttggaactgtagttactggtggttgtgagttaccatgtt
ggtactaggatctgaaaccagtttctattgcaagagctgtttgagatatt
tttctagactaagaaaacaaattctctaaataaatatagatatgaactct
cttaaacatttccatgcaatacttttttaagctagcagtatttatccagc
aaatgtccacaatttttaataaataagatgtcacaaaatagtataagact
tattaccattctctaattgttgagttggttgaatctaatttttaaatttg
gatataaagtatgtttcaaattttatccatgaatatgataaatcaataca
gttatcaacccaatacatttcttttacatttacattttatttcacctatt
atttatttgtctgtatgtgtgtgcatgtgtatgaatattgatacattttg
tcatgggggactttcagacatcttttttttaccctttgcacctggtgaat
caaccacatgttctcagtttagtgtcaacaacctttacccctaagcatct
caatccaaaggaataattatattcttacttttgttagaagaagttaatga
atgtctaaaataaatttaataaaagaagcactacctgttcttttctcact

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66389172_66389696
seq2: B6Ng01-057C22.b_43_567 (reverse)

seq1  ACACACACACACACACAAATAAAGCTAGAAAAATAGAAACCTTTAAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACAAATAAAGCTAGAAAAATAGAAACCTTTAAGAGT  50

seq1  TTTCCAATTGTATGAAAGATTTTAAAAAGAATACTAAACTCCAGATGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATTGTATGAAAGATTTTAAAAAGAATACTAAACTCCAGATGACA  100

seq1  GTGGGTCATGTCTAGCATTTTGATTTCACACATTGAGATCTGAGAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCATGTCTAGCATTTTGATTTCACACATTGAGATCTGAGAGAAAA  150

seq1  TGCAGCTAATCTATTTACTGATCCCTGACTCTAGAAGGTATAAAAGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTAATCTATTTACTGATCCCTGACTCTAGAAGGTATAAAAGAATT  200

seq1  AAGCCATTTTTTTTTTCAGGTTTCATAAGTAAATGTTTCTTTGTACTGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTTTTTTTTTCAGGTTTCATAAGTAAATGTTTCTTTGTACTGCG  250

seq1  TAAATAAAATAACATCAGCGGGGTGGTTTATAACAACCAGGGGTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAATAACATCAGCGGGGTGGTTTATAACAACCAGGGGTTTGTTT  300

seq1  CTCACACCTGGGTCTGGAAAGTCTAAAATCGAGAGATCTGAGCACATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACCTGGGTCTGGAAAGTCTAAAATCGAGAGATCTGAGCACATTCA  350

seq1  GTGACTGCTGAGACCCTGCTACCTTGCCATCTTGTCTGTGGATTCTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGCTGAGACCCTGCTACCTTGCCATCTTGTCTGTGGATTCTCTCC  400

seq1  AGGGAACAGGGATGATGGTTTTATGCTCTTGGATCTCATCTCCATCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAGGGATGATGGTTTTATGCTCTTGGATCTCATCTCCATCCACC  450

seq1  TGGGTCTTGATAAACCAATGACCTCCAAAGAAACCTACCACCTAATACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTTGATAAACCAATGACCTCCAAAGAAACCTACCACCTAATACCA  500

seq1  TCACATTTATACCTTTTAAGAATTC  525
      |||||||||||||||||||||||||
seq2  TCACATTTATACCTTTTAAGAATTC  525

seq1: chr16_66273950_66275084
seq2: B6Ng01-057C22.g_69_1168

seq1  GAATTCCCTTCTCAGTACATTCATGGCTATGTTCTCTATTTTCATCATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCTCAGTACATTCATGGCTATGTTCTCTATTTTCATCATAG  50

seq1  CCGTATATTGTACTTTGGCGCACAATATTTTCCCTTGTGGTTGAATGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATATTGTACTTTGGCGCACAATATTTTCCCTTGTGGTTGAATGCAA  100

seq1  AACAGCTGTGTATTCTGCCTTCTGTTGTTGGGTTGGGTGCTGACTAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGTGTATTCTGCCTTCTGTTGTTGGGTTGGGTGCTGACTAAATA  150

seq1  ATCTAAGACAGCCTAAATTTTGAGTTGTTCCTCACTAAAAGGGACAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGACAGCCTAAATTTTGAGTTGTTCCTCACTAAAAGGGACAGGCA  200

seq1  GTGCTAAAAAAGGAATCTATTTAAAAAACAGGTCTTTTGTTTTTTGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAAAAAGGAATCTATTTAAAAAACAGGTCTTTTGTTTTTTGGTTT  250

seq1  TTTGTTCTTTTTTTGTTTTTGTTTTTTGTTTTTATTTTTTTCAGTATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTTTTTTGTTTTTGTTTTTTGTTTTTATTTTTTTCAGTATATT  300

seq1  GAGGGTATAGATGCAGCTGGAGATTAAGCCAGAGGCTTCAGATATCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTATAGATGCAGCTGGAGATTAAGCCAGAGGCTTCAGATATCCTAA  350

seq1  GCACATATTTTAACATTAAAGCCCTAACTCAGTATTTTTAATGTCTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATATTTTAACATTAAAGCCCTAACTCAGTATTTTTAATGTCTTTGA  400

seq1  AAACAAGTTTTGGTTTTACAGATATTTATTCATTCATTTTATTTTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTTTTGGTTTTACAGATATTTATTCATTCATTTTATTTTGTTTG  450

seq1  CATTTGATCCCTTGGAACTGTAGTTACTGGTGGTTGTGAGTTACCATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGATCCCTTGGAACTGTAGTTACTGGTGGTTGTGAGTTACCATGTT  500

seq1  GGTACTAGGATCTGAAACCAGTTTCTATTGCAAGAGCTGTTTGAGATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTAGGATCTGAAACCAGTTTCTATTGCAAGAGCTGTTTGAGATATT  550

seq1  TTTCTAGACTAAGAAAACAAATTCTCTAAATAAATATAGATATGAACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGACTAAGAAAACAAATTCTCTAAATAAATATAGATATGAACTCT  600

seq1  CTTAAACATTTCCATGCAATACTTTTTTAAGCTAGCAGTATTTATCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACATTTCCATGCAATACTTTTTTAAGCTAGCAGTATTTATCCAGC  650

seq1  AAATGTCCACAATTTTTAATAAATAAGATGTCACAAAATAGTATAAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCACAATTTTTAATAAATAAGATGTCACAAAATAGTATAAGACT  700

seq1  TATTACCATTCTCTAATTGTTGAGTTGGTTGAATCTAATTTTTAAATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCATTCTCTAATTGTTGAGTTGGTTGAATCTAATTTTTAAATTTG  750

seq1  GATATAAAGTATG-TTCAAATTTTATCCATGAATATGATAAATCAATACA  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATATAAAGTATGTTTCAAATTTTATCCATGAATATGATAAATCAATACA  800

seq1  GTTATCAACCCAATACATTTCTTTTACATTTACA-TTTATTTCACCTATT  848
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  GTTATCAACCCAATACATTTCTTTTACATTTACATTTTATTTCACCTA-T  849

seq1  TATTTATTTGTCTGTATGTGTGTGCATGTGTATGAATATTGATACATTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTGTCTGTATGTGTGTGCATGTGTATGAATATTGATACATTTT  899

seq1  GTCATGGGGGACTTTCAGACATCTTTTTTTTACCCTTTGCACCATGTGAA  948
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  GTCATGGGGGACTTTCAGACATCTTTTTTTTACCCTTTGCACCTGGTGAA  949

seq1  TCAAACACATGTCCTCAGTTTTAGTGTCAAACACCTTTACCCACTAAGCA  998
      |||| ||||||| ||||| |||||||||||  |||||||||| |||||| 
seq2  TCAACCACATGTTCTCAG-TTTAGTGTCAACAACCTTTACCC-CTAAGC-  996

seq1  ATCTCAAATCCAAAGG-ATAAATATATTTCTAACTATGTTAGAAGAAAGT  1047
      ||||| |||||||||| |||| ||||||  ||  | |||||||||||  |
seq2  ATCTC-AATCCAAAGGAATAATTATATTCTTACTTTTGTTAGAAGAAGTT  1045

seq1  AATGAATTGCTAAAATAAAATTAAATAAAAGAACAATTACATGTTCTTTT  1097
      |||||||  ||||||| ||||| ||||||||||  | ||| |||||||||
seq2  AATGAATGTCTAAAAT-AAATTTAATAAAAGAAGCACTACCTGTTCTTTT  1094

seq1  CT-ACTATGGTAATGTGGTGTTTATCTTTTTTTCTCACT  1135
      || |||                                 
seq2  CTCACT---------------------------------  1100