BAC Information

Click to search

BAC

Clone NameB6Ng01-057N16
Chromosome16 (Build37)
Map Location 89,468,978 - 89,626,654
singlet/doubletdoublet
Overlap gene5430433J05Rik
Upstream geneCldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2
Downstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057N16.bB6Ng01-057N16.g
ACCDH879592DH879593
length1,0811,042
definitionDH879592|Mus musculus domesticus DNA, BAC clone: B6Ng01-057N16, 5' end.DH879593|Mus musculus domesticus DNA, BAC clone: B6Ng01-057N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,468,978 - 89,470,072)(89,625,608 - 89,626,654)
sequence
gaattcttttctttaaactttgcatgataagaagtatcattgccttccga
ggtgacatttgtataaactttccacacctccaatttacatgtatgcatac
tagattcagcatcttttctagaagagaaagagcaatacaatcaatgacct
acattcatacatttggttactttaaccgctgattcccacaagtagattag
atatcagatatctattcaattagtattacctatcaaataaaacatcagca
tctttaagtaccatttaattgtgataaattttattgagtctagtttgaat
catcatatataagcatgacaaaaaagttccaaaatttcttttgtccttgg
ttaagaatattgacttaattaaatcactatttctttgattacagcaaatg
attctgttattctagtatgtactgcaattatgacctgaacaaaaatctaa
agggtaagaacaaaaatcacaatgcgaataattgcttaatcactctgatg
ctctatcatgttggtgacaacggcaattgcaatggtgatcacttgtcttt
actaattctactttctacaaagagatttttctgaacagactcataatgtt
gctaattgtacgtgacccagaaatttctcaaatgaagagaaaagtagaat
cacagattttcatcattaattcaacatcattgtttctgtatgtctaaatg
tcagttattcactctgtaggagtagtatattgtgttgaatcatgaagtct
ttggcaaacagaaaaatataatctagaaccttttataggatttaaaactg
taagtattgtctagaaggaaatgtgtgccttggattgaagcagaagtctc
tcaaaggaacagtacctaaccacaacccagacatctgattctaaagaaac
tccatgatttcaatttagcttaaagtttcagaatattggtctatacagtc
tcaagatatttaaatgaatcattggtgtatttttcctctgtgcttaatat
ttggaaattttaacactttgtaaccaaaaatcagagatttaaaatcatca
ctataagcatatgcctaggataataaattct
ggtatgatggcaacacactgagaaaaagaacattcaggaaagagaactga
ggccaacttccaacactaaaaatgatcactacaaagagaaagctcggtgt
cttggggataagcctttctaattaatacaagagtattggtatcttcttgg
gagtggtgttcggatgtatattaaattgtagataaattactaaaaaaata
gagtctgtaaaacctagaacaaactgttagaacaaagggaaatgtagctg
agttctgtaatccattcaagaagcatgtttggatatttgatgggtacatc
atgataacctgattcatgtatgagtgtgtaatcaaagtgggacggtgggt
ctgtgtctcttcagacattaatcactgggacatgcgcacccttccagttt
cattttgaaacacaccatcggtgtcttcctcctgcacttacccaacggag
tcgttggaaaacacactaccttctcagctctgtggttttggtgccaccat
cgattgtctcatttccccttctcagccctagtgaaggctcctccctccta
tctatagaacgagcctctcagtgcccttctgtgctggcttatttcactta
gcacaatgctctctggtcccacccatgttggtgctaacagaaagattctg
tcacatacgtgcgcaacgcttcatgaatcctccgaaggacccctgagccg
agtccagattgtacacaactcatcgctgctacagtaagcatcagggtaca
agtatctcttcagtataaggttttcatttcctttggaaatgtacccactg
tgtaattgctgattttagtttttcatgagatctttatgtcgtcttacatc
aaggaggtacacgtgcactcctggtaacagcatgtaagactccttcccct
ctgcacactcaccggcacttcattattcgttttttatgcctgttgaggat
agctgtaaaaggggaaatagactgtgggtaagcggcaaaggaaactgact
ctttaggttatggaggaataaatggagaatggttcattagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89468978_89470072
seq2: B6Ng01-057N16.b_48_1128

seq1  GAATTCTTTTCTTTAAACTTTGCATGATAAGAAGTATCATTGCCTTCCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTTTAAACTTTGCATGATAAGAAGTATCATTGCCTTCCGA  50

seq1  GGTGACATTTGTATAAACTTTCCACACCTCCAATTTACATGTATGCATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATTTGTATAAACTTTCCACACCTCCAATTTACATGTATGCATAC  100

seq1  TAGATTCAGCATCTTTTCTAGAAGAGAAAGAGCAATACAATCAATGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCAGCATCTTTTCTAGAAGAGAAAGAGCAATACAATCAATGACCT  150

seq1  ACATTCATACATTTGGTTACTTTAACCGCTGATTCCCACAAGTAGATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATACATTTGGTTACTTTAACCGCTGATTCCCACAAGTAGATTAG  200

seq1  ATATCAGATATCTATTCAATTAGTATTACCTATCAAATAAAACATCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGATATCTATTCAATTAGTATTACCTATCAAATAAAACATCAGCA  250

seq1  TCTTTAAGTACCATTTAATTGTGATAAATTTTATTGAGTCTAGTTTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGTACCATTTAATTGTGATAAATTTTATTGAGTCTAGTTTGAAT  300

seq1  CATCATATATAAGCATGACAAAAAAGTTCCAAAATTTCTTTTGTCCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATATATAAGCATGACAAAAAAGTTCCAAAATTTCTTTTGTCCTTGG  350

seq1  TTAAGAATATTGACTTAATTAAATCACTATTTCTTTGATTACAGCAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATATTGACTTAATTAAATCACTATTTCTTTGATTACAGCAAATG  400

seq1  ATTCTGTTATTCTAGTATGTACTGCAATTATGACCTGAACAAAAATCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTATTCTAGTATGTACTGCAATTATGACCTGAACAAAAATCTAA  450

seq1  AGGGTAAGAACAAAAATCACAATGCGAATAATTGCTTAATCACTCTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAGAACAAAAATCACAATGCGAATAATTGCTTAATCACTCTGATG  500

seq1  CTCTATCATGTTGGTGACAACGGCAATTGCAATGGTGATCACTTGTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCATGTTGGTGACAACGGCAATTGCAATGGTGATCACTTGTCTTT  550

seq1  ACTAATTCTACTTTCTACAAAGAGATTTTTCTGAACAGACTCATAATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTCTACTTTCTACAAAGAGATTTTTCTGAACAGACTCATAATGTT  600

seq1  GCTAATTGTACGTGACCCAGAAATTTCTCAAATGAAGAGAAAAGTAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTGTACGTGACCCAGAAATTTCTCAAATGAAGAGAAAAGTAGAAT  650

seq1  CACAGATTTTCATCATTAATTCAACATCATTGTTTCTGTATGTCTAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTTTCATCATTAATTCAACATCATTGTTTCTGTATGTCTAAATG  700

seq1  TCAGTTATTCACTCTGTAGGAGTAGTATATTGTGTTGAATCATGAAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTATTCACTCTGTAGGAGTAGTATATTGTGTTGAATCATGAAGTCT  750

seq1  TTGGCAAACAGAAAAATATAATCTAGAACCTTTTATAGGATTTAAAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAACAGAAAAATATAATCTAGAACCTTTTATAGGATTTAAAACTG  800

seq1  TAAGTATTGTCTAGAAGGAAATGTGTGCCTTGGATTGAAGCAGAAGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTGTCTAGAAGGAAATGTGTGCCTTGGATTGAAGCAGAAGTCTC  850

seq1  TCAAAGGAACAGTACCTAACCACAACCCAGACATCTGATTTCTAAAGAAA  900
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  TCAAAGGAACAGTACCTAACCACAACCCAGACATCTGA-TTCTAAAG-AA  898

seq1  ACTCCATGATTTCAATTTAGCTTAAAGTTTCAGAAATATTGGTCTAATAC  950
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  ACTCCATGATTTCAATTTAGCTTAAAGTTTCAG-AATATTGGTCT-ATAC  946

seq1  AGTCTCAAGATATTTAAATGAATCATTGGTGTATTTTTTTCCTCTGTGCT  1000
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  AGTCTCAAGATATTTAAATGAATCATTGGTGTA--TTTTTCCTCTGTGCT  994

seq1  TAAATATTTGGAAATTTTAACACTTTGTACACCAAAAATCAAGAGTATTT  1050
      | ||||||||||||||||||||||||||| |||||||||| |||| ||||
seq2  T-AATATTTGGAAATTTTAACACTTTGTA-ACCAAAAATC-AGAG-ATTT  1040

seq1  AAAATCATCACTAATAGGCATATTGCCCTTATGATTATAAATTCT  1095
      |||||||||||| ||| ||||| ||||  || ||| |||||||||
seq2  AAAATCATCACT-ATAAGCATA-TGCC--TAGGATAATAAATTCT  1081

seq1: chr16_89625608_89626654
seq2: B6Ng01-057N16.g_75_1116 (reverse)

seq1  TCCTAATGTACCATCTTCCATTTATTCCTTCATAACCCTAAAGGAGTCAG  50
      |||||||| |||||  ||||||||||||| ||||| |||||| |||||||
seq2  TCCTAATGAACCATTCTCCATTTATTCCTCCATAA-CCTAAA-GAGTCAG  48

seq1  TTTCCTCTGCCGCTTACCCACAGTCTATTTCCCCTTTTACAGCTATCCTC  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGCCGCTTACCCACAGTCTATTTCCCCTTTTACAGCTATCCTC  98

seq1  AAACAGGCATAAAAAAACGAATAATGAAGTGCCGGTGAGTGTGCAGAGGG  150
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  -AACAGGCAT-AAAAAACGAATAATGAAGTGCCGGTGAGTGTGCAGAGGG  146

seq1  GAAGGAGTCCTTACATGCTGTTACCAGGAGTGCACGTGTACCTCCTTGAT  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGT-CTTACATGCTGTTACCAGGAGTGCACGTGTACCTCCTTGAT  195

seq1  GTAAGACGACATAAAGATCTCATGAAAAACTAAAATCAGCAATTACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACGACATAAAGATCTCATGAAAAACTAAAATCAGCAATTACACAG  245

seq1  TGGGTACATTTCCAAAGGAAATGAAAACCTTATACTGAAGAGATACTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACATTTCCAAAGGAAATGAAAACCTTATACTGAAGAGATACTTGT  295

seq1  ACCCTGATGCTTACTGTAGCAGCGATGAGTTGTGTACAATCTGGACTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGATGCTTACTGTAGCAGCGATGAGTTGTGTACAATCTGGACTCGG  345

seq1  CTCAGGGGTCCTTCGGAGGATTCATGAAGCGTTGCGCACGTATGTGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGTCCTTCGGAGGATTCATGAAGCGTTGCGCACGTATGTGACAG  395

seq1  AATCTTTCTGTTAGCACCAACATGGGTGGGACCAGAGAGCATTGTGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCTGTTAGCACCAACATGGGTGGGACCAGAGAGCATTGTGCTAA  445

seq1  GTGAAATAAGCCAGCACAGAAGGGCACTGAGAGGCTCGTTCTATAGATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATAAGCCAGCACAGAAGGGCACTGAGAGGCTCGTTCTATAGATAG  495

seq1  GAGGGAGGAGCCTTCACTAGGGCTGAGAAGGGGAAATGAGACAATCGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGAGCCTTCACTAGGGCTGAGAAGGGGAAATGAGACAATCGATG  545

seq1  GTGGCACCAAAACCACAGAGCTGAGAAGGTAGTGTGTTTTCCAACGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACCAAAACCACAGAGCTGAGAAGGTAGTGTGTTTTCCAACGACTC  595

seq1  CGTTGGGTAAGTGCAGGAGGAAGACACCGATGGTGTGTTTCAAAATGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGGTAAGTGCAGGAGGAAGACACCGATGGTGTGTTTCAAAATGAAA  645

seq1  CTGGAAGGGTGCGCATGTCCCAGTGATTAATGTCTGAAGAGACACAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGGTGCGCATGTCCCAGTGATTAATGTCTGAAGAGACACAGACC  695

seq1  CACCGTCCCACTTTGATTACACACTCATACATGAATCAGGTTATCATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTCCCACTTTGATTACACACTCATACATGAATCAGGTTATCATGAT  745

seq1  GTACCCATCAAATATCCAAACATGCTTCTTGAATGGATTACAGAACTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCATCAAATATCCAAACATGCTTCTTGAATGGATTACAGAACTCAG  795

seq1  CTACATTTCCCTTTGTTCTAACAGTTTGTTCTAGGTTTTACAGACTCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTCCCTTTGTTCTAACAGTTTGTTCTAGGTTTTACAGACTCTAT  845

seq1  TTTTTTAGTAATTTATCTACAATTTAATATACATCCGAACACCACTCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGTAATTTATCTACAATTTAATATACATCCGAACACCACTCCCA  895

seq1  AGAAGATACCAATACTCTTGTATTAATTAGAAAGGCTTATCCCCAAGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATACCAATACTCTTGTATTAATTAGAAAGGCTTATCCCCAAGACA  945

seq1  CCGAGCTTTCTCTTTGTAGTGATCATTTTTAGTGTTGGAAGTTGGCCTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCTTTCTCTTTGTAGTGATCATTTTTAGTGTTGGAAGTTGGCCTCA  995

seq1  GTTCTCTTTCCTGAATGTTCTTTTTCTCAGTGTGTTGCCATCATACC  1047
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTTCCTGAATGTTCTTTTTCTCAGTGTGTTGCCATCATACC  1042