BAC Information

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BAC

Clone NameB6Ng01-058H24
Chromosome16 (Build37)
Map Location 62,322,966 - 62,446,419
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058H24.bB6Ng01-058H24.g
ACCDH880061DH880062
length1,0981,088
definitionDH880061|Mus musculus domesticus DNA, BAC clone: B6Ng01-058H24, 5' end.DH880062|Mus musculus domesticus DNA, BAC clone: B6Ng01-058H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,445,301 - 62,446,419)(62,322,966 - 62,324,059)
sequence
gaattcatgattgttatttttatcttgtacttctgttatctattactggg
cctagtatatgctaagttcttcaccagtaagcaatatcctcacccccgac
atcacctttttggaaataattttgctttgtgtgccagtatggagtgggct
tacactctatgaacagctacttggctgaaatttgatttgataactctcac
gtgcttaatctccacttgtttcttttcaggagaagatcttaaatccaaag
gccactttgctatttgtgtcatatggatattggcaaatgctgagaaagtc
aaaaccatgtgtcctcatgggcactatgcccatgagaagtagaaaaaggg
atgcactgagagaccaaatcttttgaggtcagactccatcttagagaacc
taccctaaggttgaacttgaggttgctaacaacaacaaatctgcaccccc
gggttacaagcccaccccagcacttcacttcctgataaccaccaataaga
aaaaaatgcagaagttaagcttatggtttggcttcaagcaccagacaata
atgttaaaggttctaatggctccccagtcagatgtctatctggctagata
ccgacttattgcctctataaatgtttgcttaacactggattcagtgctcc
accttcctgctgtgtcagggtagcccaagcttgagcctgaataaagagac
cttaatggaattccatcaaaatcggcttcttggtggtctttatggggttc
ctgacccaacattctcaagttactgttcagaaatggggcagtagtggatg
tccacttaaagcaaacatttccaagtaccgtttcttcaaaaacatagggg
agaggtagctagctcagagtggagcacctctacaaaaacttaagccctgg
gcctgattcccagtcctggggagcagaattggagaaaaaaggaagggaag
tgagatagagaatttaatattgtcattttctgcttttattgttgatatct
agaacccagaaaagaagtgatagtgaccattacttttgagaccggaaaaa
aggaaataatcatggtctttttatctgctgcaatgaatctgtatgacc
gaattcatgcatccatgatcttggtgactgtaaaagactaggaagagtca
tctgcagttgtatccatgactgcatactcaaagatgagaaagggatatag
aaagattctgtgacaactcccaccctagcccaacacccacaaaagtaaca
acgtcaataggaagccatcaaagagaactcttaaaattggagataaggtt
gctgaagtgtaggtctctacaatagagggctgctaggggcactgggagtg
gagctggggaaaaacacactcctctttaaggggctggccactgggagttt
gaccatgctccagtgactaaaagaacaacacaaattggacgttcaaaatg
tttttttttttttttgtctgtggggagcaccacaagatttggtcagtgtg
cgaatcaagaaggcctgggaattaaaattgatcaggaaatatgtaaaatt
ccccaataatcaataaaagtattgtgattaaagaatgtagacatgcatac
aaagactaatataatattttctatactatacacacacacacacacacaca
cacacacacatatatatatgtgcatttacttctgtggtctatgacccctc
tgctcaaaaatgtacacactctatgaatatgtgaccaacagaagttgtaa
ggattttccctcttctagcttgcatttggtggggtagggcttgcatagct
atcacaatgtgaggaatcacaaacattctcagagcgagatttcaattttc
tatgtttccaaacttgatgaagcttactactaacaatcagtatcaaagag
agctgctttaaagtaaattcttaactctaaaagcacagtagtaaagcaga
ggatgaaagaactcttcaagccacaaatgactacagattccattttcaaa
gaggtatgctctgtgttaaaccaatagatttgggaagtttgtgtgtagcc
atagataactggaatgtgaaaaatccaaaatcagattataagactaccac
aaatatgaaagataatagtagggcttcttttttgattaaagggacagatg
taagggaaaaaaaaattataaatatctcacacaatcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62445301_62446419
seq2: B6Ng01-058H24.b_47_1144 (reverse)

seq1  GGTCACTACAGATTTCTATCTGCAGCAAGATAAAAAGAGCCATGATTTTA  50
      ||||| ||||||||  |   |||||| ||||||||||| ||||||  |||
seq2  GGTCA-TACAGATTCAT---TGCAGC-AGATAAAAAGA-CCATGA--TTA  42

seq1  TTTTCCTTTTTTTTCTGTCTCAAAAAGTAATTGGTTCACTATCAACTTCT  100
      |||  | |||||| | ||||| |||||||||  | |||||||| ||||||
seq2  TTT--CCTTTTTTCCGGTCTC-AAAAGTAAT--GGTCACTATC-ACTTCT  86

seq1  TTTCTGGGTTTCTAGATATCAAACAAATAAAAGCAGGAAAATGGCAATTA  150
      |||||||| |||||||||||||   |||||||||| ||||||| ||| ||
seq2  TTTCTGGG-TTCTAGATATCAA--CAATAAAAGCA-GAAAATGACAA-TA  131

seq1  TTAAATTCTCTATCTCACTTCCCCTTCCTTTATTTCTCCAATTCTGCT-C  199
      |||||||||||||||||||| |||||||||| |||||||||||||||| |
seq2  TTAAATTCTCTATCTCACTT-CCCTTCCTTT-TTTCTCCAATTCTGCTCC  179

seq1  CCAGGACTGGGAATCAGGCCCAGGGCCTTAAGTTTTTGTAGAGGTGCTCC  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCAGGACTGGGAATCAGGCCCAGGG-CTTAAGTTTTTGTAGAGGTGCTCC  228

seq1  ACTCTGAGCTAGCTACCTCTCCCCTATGTTTTTGAAGAAACGGTACTTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGCTAGCTACCTCTCCCCTATGTTTTTGAAGAAACGGTACTTGG  278

seq1  AAATGTTTGCTTTAAGTGGACATCCACTACTGCCCCATTTCTGAACAGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGCTTTAAGTGGACATCCACTACTGCCCCATTTCTGAACAGTA  328

seq1  ACTTGAGAATGTTGGGTCAGGAACCCCATAAAGACCACCAAGAAGCCGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAATGTTGGGTCAGGAACCCCATAAAGACCACCAAGAAGCCGAT  378

seq1  TTTGATGGAATTCCATTAAGGTCTCTTTATTCAGGCTCAAGCTTGGGCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGGAATTCCATTAAGGTCTCTTTATTCAGGCTCAAGCTTGGGCTA  428

seq1  CCCTGACACAGCAGGAAGGTGGAGCACTGAATCCAGTGTTAAGCAAACAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACACAGCAGGAAGGTGGAGCACTGAATCCAGTGTTAAGCAAACAT  478

seq1  TTATAGAGGCAATAAGTCGGTATCTAGCCAGATAGACATCTGACTGGGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAGGCAATAAGTCGGTATCTAGCCAGATAGACATCTGACTGGGGA  528

seq1  GCCATTAGAACCTTTAACATTATTGTCTGGTGCTTGAAGCCAAACCATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTAGAACCTTTAACATTATTGTCTGGTGCTTGAAGCCAAACCATAA  578

seq1  GCTTAACTTCTGCATTTTTTTCTTATTGGTGGTTATCAGGAAGTGAAGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAACTTCTGCATTTTTTTCTTATTGGTGGTTATCAGGAAGTGAAGTG  628

seq1  CTGGGGTGGGCTTGTAACCCGGGGGTGCAGATTTGTTGTTGTTAGCAACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTGGGCTTGTAACCCGGGGGTGCAGATTTGTTGTTGTTAGCAACC  678

seq1  TCAAGTTCAACCTTAGGGTAGGTTCTCTAAGATGGAGTCTGACCTCAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCAACCTTAGGGTAGGTTCTCTAAGATGGAGTCTGACCTCAAAA  728

seq1  GATTTGGTCTCTCAGTGCATCCCTTTTTCTACTTCTCATGGGCATAGTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGTCTCTCAGTGCATCCCTTTTTCTACTTCTCATGGGCATAGTGC  778

seq1  CCATGAGGACACATGGTTTTGACTTTCTCAGCATTTGCCAATATCCATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGGACACATGGTTTTGACTTTCTCAGCATTTGCCAATATCCATAT  828

seq1  GACACAAATAGCAAAGTGGCCTTTGGATTTAAGATCTTCTCCTGAAAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAATAGCAAAGTGGCCTTTGGATTTAAGATCTTCTCCTGAAAAGA  878

seq1  AACAAGTGGAGATTAAGCACGTGAGAGTTATCAAATCAAATTTCAGCCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTGGAGATTAAGCACGTGAGAGTTATCAAATCAAATTTCAGCCAA  928

seq1  GTAGCTGTTCATAGAGTGTAAGCCCACTCCATACTGGCACACAAAGCAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGTTCATAGAGTGTAAGCCCACTCCATACTGGCACACAAAGCAAA  978

seq1  ATTATTTCCAAAAAGGTGATGTCGGGGGTGAGGATATTGCTTACTGGTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCCAAAAAGGTGATGTCGGGGGTGAGGATATTGCTTACTGGTGA  1028

seq1  AGAACTTAGCATATACTAGGCCCAGTAATAGATAACAGAAGTACAAGATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTAGCATATACTAGGCCCAGTAATAGATAACAGAAGTACAAGATA  1078

seq1  AAAATAACAATCATGAATTC  1119
      ||||||||||||||||||||
seq2  AAAATAACAATCATGAATTC  1098

seq1: chr16_62322966_62324059
seq2: B6Ng01-058H24.g_68_1155

seq1  GAATTCATGCATCCATGATCTTGGTGACTGTAAAAGACTAGGAAGAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCATCCATGATCTTGGTGACTGTAAAAGACTAGGAAGAGTCA  50

seq1  TCTGCAGTTGTATCCATGACTGCATACTCAAAGATGAGAAAGGGATATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGTTGTATCCATGACTGCATACTCAAAGATGAGAAAGGGATATAG  100

seq1  AAAGATTCTGTGACAACTCCCACCCTAGCCCAACACCCACAAAAGTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCTGTGACAACTCCCACCCTAGCCCAACACCCACAAAAGTAACA  150

seq1  ACGTCAATAGGAAGCCATCAAAGAGAACTCTTAAAATTGGAGATAAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAATAGGAAGCCATCAAAGAGAACTCTTAAAATTGGAGATAAGGTT  200

seq1  GCTGAAGTGTAGGTCTCTACAATAGAGGGCTGCTAGGGGCACTGGGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGTGTAGGTCTCTACAATAGAGGGCTGCTAGGGGCACTGGGAGTG  250

seq1  GAGCTGGGGAAAAACACACTCCTCTTTAAGGGGCTGGCCACTGGGAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGGGAAAAACACACTCCTCTTTAAGGGGCTGGCCACTGGGAGTTT  300

seq1  GACCATGCTCCAGTGACTAAAAGAACAACACAAATTGGACGTTCAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGCTCCAGTGACTAAAAGAACAACACAAATTGGACGTTCAAAATG  350

seq1  TTTTTTTTTTTTTTTGTCTGTGGGGAGCACCACAAGATTTGGTCAGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTGTCTGTGGGGAGCACCACAAGATTTGGTCAGTGTG  400

seq1  CGAATCAAGAAGGCCTGGGAATTAAAATTGATCAGGAAATATGTAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATCAAGAAGGCCTGGGAATTAAAATTGATCAGGAAATATGTAAAATT  450

seq1  CCCCAATAATCAATAAAAGTATTGTGATTAAAGAATGTAGACATGCATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATAATCAATAAAAGTATTGTGATTAAAGAATGTAGACATGCATAC  500

seq1  AAAGACTAATATAATATTTTCTATACTATACACACACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTAATATAATATTTTCTATACTATACACACACACACACACACACA  550

seq1  CACACACACATATATATATGTGCATTTACTTCTGTGGTCTATGACCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATATATATATGTGCATTTACTTCTGTGGTCTATGACCCCTC  600

seq1  TGCTCAAAAATGTACACACTCTATGAATATGTGACCAACAGAAGTTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAAAATGTACACACTCTATGAATATGTGACCAACAGAAGTTGTAA  650

seq1  GGATTTTCCCTCTTCTAGCTTGCATTTGGTGGGGTAGGGCTTGCATAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCCCTCTTCTAGCTTGCATTTGGTGGGGTAGGGCTTGCATAGCT  700

seq1  ATCACAATGTGAGGAATCACAAACATTCTCAGAGCGAGATTTCAATTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAATGTGAGGAATCACAAACATTCTCAGAGCGAGATTTCAATTTTC  750

seq1  TATGTTTCCAAACTTGATGAAGCTTACTACTAACAATCAGTATCAAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCCAAACTTGATGAAGCTTACTACTAACAATCAGTATCAAAGAG  800

seq1  AGCTGCTTTAAAGTAAATTCTTAACTCTAAAAGCACAGTAGTAAAAGCAG  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCTGCTTTAAAGTAAATTCTTAACTCTAAAAGCACAGTAGT-AAAGCAG  849

seq1  A-GATGAAAGAACTCTTCAAGCCACAAATGACTACAGATTCCATTTTCAA  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAAAGAACTCTTCAAGCCACAAATGACTACAGATTCCATTTTCAA  899

seq1  AGAGGTTATTGCTCTGTGTTAAACCAATAGATTTGGGAAGTTTGTGTGTA  949
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGT--ATGCTCTGTGTTAAACCAATAGATTTGGGAAGTTTGTGTGTA  947

seq1  GCCATAGATAACTGGAATGTGAGAGATTCAAAATCAGATTTATAAGAACT  999
      |||||||||||||||||||||| | || |||||||||| ||||||| |||
seq2  GCCATAGATAACTGGAATGTGAAAAATCCAAAATCAGA-TTATAAG-ACT  995

seq1  ACCACAAATATGATAGATAATAGTAGGGCTTCTTTATTTGATTAGAGGGA  1049
      ||||||||||||| ||||||||||||||||||||| |||||||| |||||
seq2  ACCACAAATATGAAAGATAATAGTAGGGCTTCTTT-TTTGATTAAAGGGA  1044

seq1  CAGATGATAAGGGAAGAGAAAATTATTAAATATCACACA-AATCAT  1094
      |||||| |||||||| | ||||||| |||||||| |||| ||||||
seq2  CAGATG-TAAGGGAAAAAAAAATTA-TAAATATCTCACACAATCAT  1088