BAC Information

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BAC

Clone NameB6Ng01-058N06
Chromosome16 (Build37)
Map Location 19,029,207 - 19,030,253
singlet/doubletsinglet
Overlap geneIgl
Upstream geneDgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira
Downstream geneIgl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058N06.bB6Ng01-058N06.g
ACCDH880299DH880300
length1,1271,039
definitionDH880299|Mus musculus domesticus DNA, BAC clone: B6Ng01-058N06, 5' end.DH880300|Mus musculus domesticus DNA, BAC clone: B6Ng01-058N06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaatcctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttatcccctgtgcccatatcttcaaggcttttccccac
tttcttctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatgaatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcaaagatcaagg
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattctgccagaagtttttt
atccttgagaagactttttgctatcctaggttttttgttattccacacga
atttgcaaattgctccttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttgacaagatagccatttt
tacactgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagagacttgaagtttttatcatac
agatctttcacttccttagttagagtcacggcgagatttttatattactg
tgataatggagagggtgttgtttccctaatttctttctcaggcttgttta
ttcttgtgtagaggacggccattggactttgatgtgattttttatcatct
cttctcgcaagcagttatcaggtggtaggttcctggggagatatgtgggc
catattatatccattatccccgaagga
gaattcaggctttcaatacaaaagcatgacaaaagagtgtcagatggcca
tggaaacatctgtttttctggaaagtaaagtctcaagaagaacagaaatg
gcatgctttatcatatttagagctgcagttgaaattgtttaaaatagaag
atacaatgattagtcaacaattgtgttaattcttgaagtggtgtgggtgc
tgactactattagtcttaaacatatgttcaggattgttttgatacctgta
tttataataaaagatgtttggggttttgaatttctgttaaaagctgttcc
tatttgtaacatttgtaacagacatgataatttttttacagtctttgttt
agtaaaacatgcttagatgttttaagtggagttaacaaaaaggaaatcag
tgtatggatatgtgattttaatatgaaagttagtcttaaaatttaaataa
aatatggaatgtgtcttaaaaaaagatggataggagcccattctgcctga
ttctggagatttcactgcagtggaatgaaggtcctaggtattggcttcat
aggattactaaatgcctgttctgattttgaatgttccaagttttgtaaat
ggtatagaagacagtaaagctcaagacattgacacctttcaaattggtag
atatggccagaatgaaacttttattgcctctatttcaggccttttgatct
aggccctggtgtcacaaatatcctgggctgtgagatttgtaaatctctgg
ttcctgtcccaaactagaaattacattcaagatttagttcctcatcagta
gccaaacctcttccctggagctgcctcaaatgaagagcttttgctcagtc
tccctgtgcagactttaactgtgttgaattactctttctcttgcataggc
tcacatctctgctctctctcttcctttcccacatgtggcctagttctagc
accacccagccatagtacttcagagtttagggactttctgggtggagagt
aggtggtaggtcagaacagtggacataagattgtgggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_19029207_19030253
seq2: B6Ng01-058N06.g_66_1104

seq1  GAATTCAGGCTTTCAATACAAAAGCATGACAAAAGAGTGTCAGATGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTTTCAATACAAAAGCATGACAAAAGAGTGTCAGATGGCCA  50

seq1  TGGAAACATCTGTTTTTCTGGAAAGTAAAGTCTCAAGAAGAACAGAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACATCTGTTTTTCTGGAAAGTAAAGTCTCAAGAAGAACAGAAATG  100

seq1  GCATGCTTTATCATATTTAGAGCTGCAGTTGAAATTGTTTAAAATAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTTTATCATATTTAGAGCTGCAGTTGAAATTGTTTAAAATAGAAG  150

seq1  ATACAATGATTAGTCAACAATTGTGTTAATTCTTGAAGTGGTGTGGGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATGATTAGTCAACAATTGTGTTAATTCTTGAAGTGGTGTGGGTGC  200

seq1  TGACTACTATTAGTCTTAAACATATGTTCAGGATTGTTTTGATACCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACTATTAGTCTTAAACATATGTTCAGGATTGTTTTGATACCTGTA  250

seq1  TTTATAATAAAAGATGTTTGGGGTTTTGAATTTCTGTTAAAAGCTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATAAAAGATGTTTGGGGTTTTGAATTTCTGTTAAAAGCTGTTCC  300

seq1  TATTTGTAACATTTGTAACAGACATGATAATTTTTTTACAGTCTTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAACATTTGTAACAGACATGATAATTTTTTTACAGTCTTTGTTT  350

seq1  AGTAAAACATGCTTAGATGTTTTAAGTGGAGTTAACAAAAAGGAAATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACATGCTTAGATGTTTTAAGTGGAGTTAACAAAAAGGAAATCAG  400

seq1  TGTATGGATATGTGATTTTAATATGAAAGTTAGTCTTAAAATTTAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGATATGTGATTTTAATATGAAAGTTAGTCTTAAAATTTAAATAA  450

seq1  AATATGGAATGTGTCTTAAAAAAAGATGGATAGGAGCCCATTCTGCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGAATGTGTCTTAAAAAAAGATGGATAGGAGCCCATTCTGCCTGA  500

seq1  TTCTGGAGATTTCACTGCAGTGGAATGAAGGTCCTAGGTATTGGCTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGATTTCACTGCAGTGGAATGAAGGTCCTAGGTATTGGCTTCAT  550

seq1  AGGATTACTAAATGCCTGTTCTGATTTTGAATGTTCCAAGTTTTGTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTACTAAATGCCTGTTCTGATTTTGAATGTTCCAAGTTTTGTAAAT  600

seq1  GGTATAGAAGACAGTAAAGCTCAAGACATTGACACCTTTCAAATTGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGAAGACAGTAAAGCTCAAGACATTGACACCTTTCAAATTGGTAG  650

seq1  ATATGGCCAGAATGAAACTTTTATTGCCTCTATTTCAGGCCTTTTGATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCCAGAATGAAACTTTTATTGCCTCTATTTCAGGCCTTTTGATCT  700

seq1  AGGCCCTGGTGTCACAAATATCCTGGGCTGTGAGATTTGTAAATCTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGGTGTCACAAATATCCTGGGCTGTGAGATTTGTAAATCTCTGG  750

seq1  TTCCTGTCCCAAACTAGAAATTACATTCAAGATTTAGTTCCTCATCAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCCCAAACTAGAAATTACATTCAAGATTTAGTTCCTCATCAGTA  800

seq1  GCCAAACCTCTTCCCTGGAGCTGCCTCAAATGAAGAGCTTTTGCTCAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACCTCTTCCCTGGAGCTGCCTCAAATGAAGAGCTTTTGCTCAGTC  850

seq1  TCCCTGTGCAGACTTTAACTGTGTTGAATTACTCTTTCTCCTTGCAATAG  900
      ||||||||||||||||||||||||||||||||||||||| ||||| ||| 
seq2  TCCCTGTGCAGACTTTAACTGTGTTGAATTACTCTTTCT-CTTGC-ATA-  897

seq1  GGCTCACATCTCTGCTCTCCTCTCTTTCCTTTCCCACATGTGGCCTAGTT  950
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  GGCTCACATCTCTGCTCT-CTCTC-TTCCTTTCCCACATGTGGCCTAGTT  945

seq1  CTTAGCACCACCCAGCCATAGTAC-TCAGAGTTTAGGGACTTTCTGTGTG  999
      | |||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  C-TAGCACCACCCAGCCATAGTACTTCAGAGTTTAGGGACTTTCTGGGTG  994

seq1  GAGAGTAGGGTGGTAGGTCAGGAACAGTGGGACATAAGATTGTGGGAT  1047
      ||||||| |||||||||||| ||||||| |||||||||||||||||||
seq2  GAGAGTA-GGTGGTAGGTCA-GAACAGT-GGACATAAGATTGTGGGAT  1039