BAC Information

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BAC

Clone NameB6Ng01-058P16
Chromosome16 (Build37)
Map Location 44,401,458 - 44,507,545
singlet/doubletdoublet
Overlap geneWdr52, Boc
Upstream geneZbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52
Downstream geneLOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058P16.bB6Ng01-058P16.g
ACCDH880408DH880409
length1,060489
definitionDH880408|Mus musculus domesticus DNA, BAC clone: B6Ng01-058P16, 5' end.DH880409|Mus musculus domesticus DNA, BAC clone: B6Ng01-058P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,401,458 - 44,402,523)(44,507,051 - 44,507,545)
sequence
gaattcataatggggagagatctgttaatttctgtgttccggccttatgt
ctttctctctcattttgtacttacagacaatatgaaggagccagatgacc
aagacacttctgatggggggagatcgggatcaaggaatgagggaaagctg
gctcataagtccattttgaaatgtgagtaggggtaataacatacacacag
agttctttgttatcagctttgggtaagatcatttaaaaagaggaccatct
ggacttacagacagaaatgcttggcctgtttccatactctcttacaaact
cacctgttccataaaagtagcatctatgctttaattttttaaccccagct
cctagctcatctctctgtacttagctcagtgggttgaaggctggcctaaa
gtaccagaggtcttgggttcaattcctggcactgcttgacgtggaagtgt
aaatcctagccagtccagaggtaaaaactggaggattaggattttgggct
cattctcagccttagccagccaccaccttgagacccactgggttacatta
gaccctgggtcaaaacaaccaaagaaatgtcagctgtctatgttgatagc
aagctgcatgaatatcttgctctccatttcctctgcgatctctgtctttg
acggacaatcggatacagcagaatggaaagcagtttggctttaagccccg
agtccaccacttggaggtgctttgccaaggaccaccccaatcgggtatgg
gggctcctgggatgaggatcgtcaaaggctaggtgggtaaggattcggcg
gcgacaaacagaaacaagctcagaggcagtttgaatctgagtgtattttt
gcagctctcaaacaagggtttttatgcataaagaaactgtattacaattc
taaaaaatatattccatgagcagtcaggtagaacagatattataatcatt
ttggcaccataaaatacaaaatcatctaaggctagtgacaaatttccaag
acaaggtattaaaattttttgtcacgttactgttgacaccggattttctg
taatcttcaa
ttaccgcagccgccaaactgagaggaatagaaatggcagctaagacctaa
gcttaggaggcacaaggaggggacagcagcaaagaccaaactgccgctta
tttgttttgaagccaagaagccttgcctgccagtcagcccttgtgaggag
tggggcacccagatggggtgtccagggtcctgcccacacgggctgttgtg
cacatgttggcatcagaacaaagggagagttgggttgcatggctgaccag
tgcccagcttcatgcctgcctgaatgctcagccttctgtttgtgctctag
cggttgtcagagggtgtattgagagccaagaggggtgtaaggaggaccca
gtgttctagtacttggtggtgaggtgggggatgcttggtggatggagcac
atacttcacatccggatgagccttcctgtattggaggcagaagcctgggg
acattatgatggaggtggctttctggtgccaagctcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_44401458_44402523
seq2: B6Ng01-058P16.b_47_1106

seq1  GAATTCATAATGGGGAGAGATCTGTTAATTTCTGTGTTCCGGCCTTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATGGGGAGAGATCTGTTAATTTCTGTGTTCCGGCCTTATGT  50

seq1  CTTTCTCTCTCATTTTGTACTTACAGACAATATGAAGGAGCCAGATGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCTCATTTTGTACTTACAGACAATATGAAGGAGCCAGATGACC  100

seq1  AAGACACTTCTGATGGGGGGAGATCGGGATCAAGGAATGAGGGAAAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACTTCTGATGGGGGGAGATCGGGATCAAGGAATGAGGGAAAGCTG  150

seq1  GCTCATAAGTCCATTTTGAAATGTGAGTAGGGGTAATAACATACACACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAAGTCCATTTTGAAATGTGAGTAGGGGTAATAACATACACACAG  200

seq1  AGTTCTTTGTTATCAGCTTTGGGTAAGATCATTTAAAAAGAGGACCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTGTTATCAGCTTTGGGTAAGATCATTTAAAAAGAGGACCATCT  250

seq1  GGACTTACAGACAGAAATGCTTGGCCTGTTTCCATACTCTCTTACAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTACAGACAGAAATGCTTGGCCTGTTTCCATACTCTCTTACAAACT  300

seq1  CACCTGTTCCATAAAAGTAGCATCTATGCTTTAATTTTTTAACCCCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTTCCATAAAAGTAGCATCTATGCTTTAATTTTTTAACCCCAGCT  350

seq1  CCTAGCTCATCTCTCTGTACTTAGCTCAGTGGGTTGAAGGCTGGCCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTCATCTCTCTGTACTTAGCTCAGTGGGTTGAAGGCTGGCCTAAA  400

seq1  GTACCAGAGGTCTTGGGTTCAATTCCTGGCACTGCTTGACGTGGAAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGAGGTCTTGGGTTCAATTCCTGGCACTGCTTGACGTGGAAGTGT  450

seq1  AAATCCTAGCCAGTCCAGAGGTAAAAACTGGAGGATTAGGATTTTGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTAGCCAGTCCAGAGGTAAAAACTGGAGGATTAGGATTTTGGGCT  500

seq1  CATTCTCAGCCTTAGCCAGCCACCACCTTGAGACCCACTGGGTTACATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCAGCCTTAGCCAGCCACCACCTTGAGACCCACTGGGTTACATTA  550

seq1  GACCCTGGGTCAAAACAACCAAAGAAATGTCAGCTGTCTATGTTGATAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGGGTCAAAACAACCAAAGAAATGTCAGCTGTCTATGTTGATAGC  600

seq1  AAGCTGCATGAATATCTTGCTCTCCATTTCCTCTGCGATCTCTGTCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCATGAATATCTTGCTCTCCATTTCCTCTGCGATCTCTGTCTTTG  650

seq1  ACGGACAATCGGATACAGCAGAATGGAAAGCAGTTTGGCTTTAAGCCCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACAATCGGATACAGCAGAATGGAAAGCAGTTTGGCTTTAAGCCCCG  700

seq1  AGTCCACCACTTGGAGGTGCTTTGCCAAGGACCACCCCAATCGGGTATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACCACTTGGAGGTGCTTTGCCAAGGACCACCCCAATCGGGTATGG  750

seq1  GGGCTCCTGGGATGAGGATCGTCAAAGGCTAGGTGGGTAAGGATTCGGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCTGGGATGAGGATCGTCAAAGGCTAGGTGGGTAAGGATTCGGCG  800

seq1  GCGACAAACAGAAACAAGCTCAGAGGCAGTTTGAATCTGAGTGTA-TTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCGACAAACAGAAACAAGCTCAGAGGCAGTTTGAATCTGAGTGTATTTTT  850

seq1  GCAGCTCTCAAACAAGGGTTTTTATGCATAAAGAAACAGGTATTACAATT  899
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  GCAGCTCTCAAACAAGGGTTTTTATGCATAAAGAAAC-TGTATTACAATT  899

seq1  CTAAAAAATATATTCAATGAAGCAGTCAGGTAGAACAGATATTATAATCA  949
      ||||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  CTAAAAAATATATTCCATG-AGCAGTCAGGTAGAACAGATATTATAATCA  948

seq1  -TTTGGCACAATAAAATACAAAAATCATCTAAGGCTAGTGACAAATTTCC  998
       |||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTGGCACCATAAAATAC-AAAATCATCTAAGGCTAGTGACAAATTTCC  997

seq1  AAGAACAAGGTAATAAAATTTTTATGGTCA-GTTACTGTTTAACAACCTG  1047
      ||| |||||||| |||||||||  | |||| ||||||||| |   ||| |
seq2  AAG-ACAAGGTATTAAAATTTT--TTGTCACGTTACTGTTGA--CACCGG  1042

seq1  ATTTTCTGTAAATCTTCAA  1066
      ||||||||| |||||||||
seq2  ATTTTCTGT-AATCTTCAA  1060

seq1: chr16_44507051_44507545
seq2: B6Ng01-058P16.g_69_563 (reverse)

seq1  AAGGAGCTTGGCACCAGAAAGCCAACTCCATCATAATGTCCCCAGGCTTC  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGGAGCTTGGCACCAGAAAGCCACCTCCATCATAATGTCCCCAGGCTTC  50

seq1  TGCCTCCACTACAGGAAGGCTCATCCGGATGTGAAGTATGTGCTCCATCC  100
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCAATACAGGAAGGCTCATCCGGATGTGAAGTATGTGCTCCATCC  100

seq1  ACCAAGCATCCCCCACCTCACCACCAAGTACTAGAACACTGGGTCCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCATCCCCCACCTCACCACCAAGTACTAGAACACTGGGTCCTCCT  150

seq1  TACACCCCTCTTGGCTCTCAATACACCCTCTGACAACCGCTAGAGCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCCTCTTGGCTCTCAATACACCCTCTGACAACCGCTAGAGCACAA  200

seq1  ACAGAAGGCTGAGCATTCAGGCAGGCATGAAGCTGGGCACTGGTCAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGCTGAGCATTCAGGCAGGCATGAAGCTGGGCACTGGTCAGCCA  250

seq1  TGCAACCCAACTCTCCCTTTGTTCTGATGCCAACATGTGCACAACAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCCAACTCTCCCTTTGTTCTGATGCCAACATGTGCACAACAGCCC  300

seq1  GTGTGGGCAGGACCCTGGACACCCCATCTGGGTGCCCCACTCCTCACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGCAGGACCCTGGACACCCCATCTGGGTGCCCCACTCCTCACAAG  350

seq1  GGCTGACTGGCAGGCAAGGCTTCTTGGCTTCAAAACAAATAAGCGGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACTGGCAGGCAAGGCTTCTTGGCTTCAAAACAAATAAGCGGCAGT  400

seq1  TTGGTCTTTGCTGCTGTCCCCTCCTTGTGCCTCCTAAGCTTAGGTCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTTGCTGCTGTCCCCTCCTTGTGCCTCCTAAGCTTAGGTCTTAG  450

seq1  CTGCCATTTCTATTCCTCTCAGTTTGGCGGCTGCGGTAAGAATTC  495
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTTCTATTCCTCTCAGTTTGGCGGCTGCGGTAAGAATTC  495