BAC Information

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BAC

Clone NameB6Ng01-059D03
Chromosome16 (Build37)
Map Location 17,922,271 - 18,065,996
singlet/doubletdoublet
Overlap geneSlc25a1, Vpreb2, Dgcr6
Upstream genePpm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl
Downstream geneProdh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059D03.bB6Ng01-059D03.g
ACCDH880545DH880546
length1,1291,018
definitionDH880545|Mus musculus domesticus DNA, BAC clone: B6Ng01-059D03, 5' end.DH880546|Mus musculus domesticus DNA, BAC clone: B6Ng01-059D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,064,845 - 18,065,996)(17,922,271 - 17,923,305)
sequence
gaattcatgctggctcaacagtcctttacctactgagccagccccagccc
ctgacagtgtccacattcataatttagtttgcagcatgaataagagaaat
gacaccttcctacagcgtttttttaaataaaaattacattccctgatgtg
ccatctttttcccttttattactattttaaaaatataactctgttgaatc
atcctggttactttctttttgttttcccttttgccacgataagctctgaa
gtagtgaattcagatctgggtaacataaattacagtgaagaaaccttgtg
aagtttgaatgcaaatgaccccatagcctcagatatttggaaacttggtc
cccagttggtggaattactaaggaaggattaggaggtgtggctttattgg
agaaagagtgtcactgagggctggttttgagattttaaaacatacaccat
ccatacattctctgtctgtctgtctgtctctgtatgtctgtctctgtatg
tctctctacctctgtctctgtgtctctctttgtctctctctctctctgtg
tctctgtctgtctctttctgactctctgtctctctgtgtgagtgtgtctg
tctgtctgtctgtctgtctgtctgtctctttctcttgtctcatcactacc
agcaccacctcatgcttttgaattaagatataagctatcagctacttccc
cagggccatacctgcctacctggctggtgccatgctctctaccatggtgg
tcctggagtcaccttctgaagctgtaagacccccaacaaacccttctgta
agttgccttgttcatggtgtcctcgcagcaatagaaaagcctctgaaaca
cctgtgcatggagaataatttgcatgaataaatatactccaaagtaactg
taatttaatgttgacagtatacaaattatggtgaatcattaaatcagaca
tttaaaagtcacgatttgcagctggggatgtagcttagtggtagagcgtt
gctagcattcaagatgcagtgggttctatgtgcagtatcaagaaacagca
tggtggggctgtcttgattcatactcagaattgtagcatggtcgattcca
ggcatctttgggtcatatggtccaggctg
gaattccaagagccctcgctcgcacaccaaacggtctgtgctctccatgc
tgcatgtcgaggcgggcacagcctctctcatgtgttcatctctgtccgga
tcagcttttggatcatggaggcaggcgtattgtttttccttttggaacac
cgggagaatctcccagacacctgaggagctggtgacttgatggagaggac
ctggcacgtggccagcctccgtaggtctgtgagggcctttgtgcaggctg
gccagacagtctgagctgtcctcttacgatccagtgcttgaaaaccttcc
caacgcctgggagcgttaggaggctgcgctgctctggtagtcaggctagt
gaggtaggtatttcagttaggctgaggaccaaagggtggcttgtctcctg
gggtcacttaagataatgcctttggagcatagtttacttaggccggtgac
atggaggataggtgactgacattccactgagaagacaaatgtgacatcgg
tgttaaaggccactctgggggctcagggcttgccacaaccagatcagaag
ggagaatgctcttcttgggtattgccaggacagagtaggacgttgtacgt
tacaggaccacgccccagtgcttttcccactgtccttttaggaggtgcag
tgccagtatctccattctttgtcctgtgtctaggtggtcccagatcttga
agaggctactaggtgttcctcagactctaattctatgctttagacctacg
aatttataagtccaagaatctgtgaaacaggaaattaaagccagcatcaa
aaaaaaaaattgaaatcttaaactgagactgttttctgagtgctgggagg
gatacaaaggaaagcaagaattcttttatttgcctaaatgagacagtcac
tgggctggggcacggctcagatatgcaagctgactctgatttctgatctc
tactaaagtttgggtttttttaggatgcagaacagcattttcactataaa
gtgtgatttctttgatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_18064845_18065996
seq2: B6Ng01-059D03.b_46_1174 (reverse)

seq1  CAGCCTGGAACTCACTATGTAGCCAAAGATGCCCCTGCGCATCCGACCAT  50
      |||||||||   |  |||| | |||||||||  |||| | || |||||||
seq2  CAGCCTGGA---CCATATG-ACCCAAAGATG--CCTG-GAAT-CGACCAT  42

seq1  GCCTACAATTCCTGAGTACTGGAATCACAGACATGCGCCACCATGCCTGG  100
      | |||||||| |||||||   |||||| ||||| || |||||||||   |
seq2  G-CTACAATT-CTGAGTA--TGAATCA-AGACA-GCCCCACCATGC--TG  84

seq1  TTTCTGTGATACTGCACATAGAACCCCACTGCATCTTGAATGCTAGGCAA  150
      ||||| ||||||||||||||||| ||||||||||||||||||||| ||||
seq2  TTTCT-TGATACTGCACATAGAA-CCCACTGCATCTTGAATGCTA-GCAA  131

seq1  CGCTCTACCAACTAAGCTACATCCCCAGCTGCAGATCGTGACTTTTAAAT  200
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  CGCTCTACC-ACTAAGCTACATCCCCAGCTGCAAATCGTGACTTTTAAAT  180

seq1  GTCTGATTTAAATGATTCACCATAATTTGGTATACTGTCAACATTAAATT  250
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  GTCTGATTT-AATGATTCACCATAATTT-GTATACTGTCAACATTAAATT  228

seq1  ACAGTTACTTTGGAGTATATTTATTCATGCAAATTATTTCTCCATGCACA  300
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAGTTACTTTGGAGTATATTTATTCATGCAAATTA-TTCTCCATGCACA  277

seq1  GGTGTTTCAGAGGCTTTTCTATTGCTGCGAGGACACCATGAACAAGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTCAGAGGCTTTTCTATTGCTGCGAGGACACCATGAACAAGGCAA  327

seq1  CTTACAGAAGGGTTTGTTGGGGGTCTTACAGCTTCAGAAGGTGACTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGAAGGGTTTGTTGGGGGTCTTACAGCTTCAGAAGGTGACTCCAG  377

seq1  GACCACCATGGTAGAGAGCATGGCACCAGCCAGGTAGGCAGGTATGGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCATGGTAGAGAGCATGGCACCAGCCAGGTAGGCAGGTATGGCCC  427

seq1  TGGGGAAGTAGCTGATAGCTTATATCTTAATTCAAAAGCATGAGGTGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGTAGCTGATAGCTTATATCTTAATTCAAAAGCATGAGGTGGTG  477

seq1  CTGGTAGTGATGAGACAAGAGAAAGAGACAGACAGACAGACAGACAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGTGATGAGACAAGAGAAAGAGACAGACAGACAGACAGACAGACA  527

seq1  GACAGACACACTCACACAGAGAGACAGAGAGTCAGAAAGAGACAGACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACACACTCACACAGAGAGACAGAGAGTCAGAAAGAGACAGACAGA  577

seq1  GACACAGAGAGAGAGAGAGACAAAGAGAGACACAGAGACAGAGGTAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAGAGAGAGAGAGACAAAGAGAGACACAGAGACAGAGGTAGAGA  627

seq1  GACATACAGAGACAGACATACAGAGACAGACAGACAGACAGAGAATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACAGAGACAGACATACAGAGACAGACAGACAGACAGAGAATGTAT  677

seq1  GGATGGTGTATGTTTTAAAATCTCAAAACCAGCCCTCAGTGACACTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTGTATGTTTTAAAATCTCAAAACCAGCCCTCAGTGACACTCTTT  727

seq1  CTCCAATAAAGCCACACCTCCTAATCCTTCCTTAGTAATTCCACCAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATAAAGCCACACCTCCTAATCCTTCCTTAGTAATTCCACCAACTG  777

seq1  GGGACCAAGTTTCCAAATATCTGAGGCTATGGGGTCATTTGCATTCAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCAAGTTTCCAAATATCTGAGGCTATGGGGTCATTTGCATTCAAAC  827

seq1  TTCACAAGGTTTCTTCACTGTAATTTATGTTACCCAGATCTGAATTCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGGTTTCTTCACTGTAATTTATGTTACCCAGATCTGAATTCACT  877

seq1  ACTTCAGAGCTTATCGTGGCAAAAGGGAAAACAAAAAGAAAGTAACCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGAGCTTATCGTGGCAAAAGGGAAAACAAAAAGAAAGTAACCAGG  927

seq1  ATGATTCAACAGAGTTATATTTTTAAAATAGTAATAAAAGGGAAAAAGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCAACAGAGTTATATTTTTAAAATAGTAATAAAAGGGAAAAAGAT  977

seq1  GGCACATCAGGGAATGTAATTTTTATTTAAAAAAACGCTGTAGGAAGGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATCAGGGAATGTAATTTTTATTTAAAAAAACGCTGTAGGAAGGTG  1027

seq1  TCATTTCTCTTATTCATGCTGCAAACTAAATTATGAATGTGGACACTGTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTCTTATTCATGCTGCAAACTAAATTATGAATGTGGACACTGTC  1077

seq1  AGGGGCTGGGGCTGGCTCAGTAGGTAAAGGACTGTTGAGCCAGCATGAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGGGGCTGGCTCAGTAGGTAAAGGACTGTTGAGCCAGCATGAAT  1127

seq1  TC  1152
      ||
seq2  TC  1129

seq1: chr16_17922271_17923305
seq2: B6Ng01-059D03.g_67_1084

seq1  GAATTCCAAGAGCCCTCGCTCGCACACCAAACGGTCTGTGCTCTCCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAGCCCTCGCTCGCACACCAAACGGTCTGTGCTCTCCATGC  50

seq1  TGCATGTCGAGGCGGGCACAGCCTCTCTCATGTGTTCATCTCTGTCCGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTCGAGGCGGGCACAGCCTCTCTCATGTGTTCATCTCTGTCCGGA  100

seq1  TCAGCTTTTGGATCATGGAGGCAGGCGTATTGTTTTTCCTTTTGGAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTTGGATCATGGAGGCAGGCGTATTGTTTTTCCTTTTGGAACAC  150

seq1  CGGGAGAATCTCCCAGACACCTGAGGAGCTGGTGACTTGATGGAGAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGAATCTCCCAGACACCTGAGGAGCTGGTGACTTGATGGAGAGGAC  200

seq1  CTGGCACGTGGCCAGCCTCCGTAGGTCTGTGAGGGCCTTTGTGCAGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACGTGGCCAGCCTCCGTAGGTCTGTGAGGGCCTTTGTGCAGGCTG  250

seq1  GCCAGACAGTCTGAGCTGTCCTCTTACGATCCAGTGCTTGAAAACCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACAGTCTGAGCTGTCCTCTTACGATCCAGTGCTTGAAAACCTTCC  300

seq1  CAACGCCTGGGAGCGTTAGGAGGCTGCGCTGCTCTGGTAGTCAGGCTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCCTGGGAGCGTTAGGAGGCTGCGCTGCTCTGGTAGTCAGGCTAGT  350

seq1  GAGGTAGGTATTTCAGTTAGGCTGAGGACCAAAGGGTGGCTTGTCTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGTATTTCAGTTAGGCTGAGGACCAAAGGGTGGCTTGTCTCCTG  400

seq1  GGGTCACTTAAGATAATGCCTTTGGAGCATAGTTTACTTAGGCCGGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACTTAAGATAATGCCTTTGGAGCATAGTTTACTTAGGCCGGTGAC  450

seq1  ATGGAGGATAGGTGACTGACATTCCACTGAGAAGACAAATGTGACATCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGATAGGTGACTGACATTCCACTGAGAAGACAAATGTGACATCGG  500

seq1  TGTTAAAGGCCACTCTGGGGGCTCAGGGCTTGCCACAACCAGATCAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGGCCACTCTGGGGGCTCAGGGCTTGCCACAACCAGATCAGAAG  550

seq1  GGAGAATGCTCTTCTTGGGTATTGCCAGGACAGAGTAGGACGTTGTACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATGCTCTTCTTGGGTATTGCCAGGACAGAGTAGGACGTTGTACGT  600

seq1  TACAGGACCACGCCCCAGTGCTTTTCCCACTGTCCTTTTAGGAGGTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGACCACGCCCCAGTGCTTTTCCCACTGTCCTTTTAGGAGGTGCAG  650

seq1  TGCCAGTATCTCCATTCTTTGTCCTGTGTCTAGGTGGTCCCAGATCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTATCTCCATTCTTTGTCCTGTGTCTAGGTGGTCCCAGATCTTGA  700

seq1  AGAGGCTACTAGGTGTTCCTCAGACTCTAATTCTATGCTTTAGACCTACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTACTAGGTGTTCCTCAGACTCTAATTCTATGCTTTAGACCTACG  750

seq1  AATTTATAAGTCCAAGAATCTGTGAAACAGGAAATTAAAAGCCAGCATCA  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATTTATAAGTCCAAGAATCTGTGAAACAGGAAATT-AAAGCCAGCATCA  799

seq1  AAAAAAAAAATTGAAATCTTAAACTGAGACTGTTTTCTGAGTGCTGGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATTGAAATCTTAAACTGAGACTGTTTTCTGAGTGCTGGGAG  849

seq1  GGATACAAAGGAAAGCAAGAATTCTTTTATTTGCCTAAAATGAGACAGTC  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGATACAAAGGAAAGCAAGAATTCTTTTATTTGCCT-AAATGAGACAGTC  898

seq1  ACTGGGCTGGGGCACGGCTCAGATATGCAAGCTTGGACTCTGAATTTCTT  950
      |||||||||||||||||||||||||||||||||  ||||||| ||||| |
seq2  ACTGGGCTGGGGCACGGCTCAGATATGCAAGCT--GACTCTG-ATTTC-T  944

seq1  GATTCTCTACTTAAAGTTTGGGGTTTTTTTTAGAATGCAGGAAACAAGCA  1000
      || ||||||| |||||||||||  ||||||||| ||||||  ||| ||||
seq2  GA-TCTCTAC-TAAAGTTTGGG--TTTTTTTAGGATGCAG--AAC-AGCA  987

seq1  TTTTTCAACTATTAAAGTGTGATTTCTTTGGATAT  1035
      ||||   |||| ||||||||||||||||| |||||
seq2  TTTT--CACTA-TAAAGTGTGATTTCTTT-GATAT  1018