BAC Information

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BAC

Clone NameB6Ng01-059G10
Chromosome16 (Build37)
Map Location 48,368,486 - 48,369,733
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628776, EG667741, EG639644, EG637273, Dppa4, Dppa2
Downstream geneEG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059G10.b
ACCDH880695
length1,204
definitionDH880695|Mus musculus domesticus DNA, BAC clone: B6Ng01-059G10, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatcatttccaagtaaatccttagtaaaaactccactgagctgg
aaagttttgctgataatattctagacaaaactccaaacaacaaaaacaaa
acttctttatatcagagatcaaactttccaccccatttggacacacatga
ggagtcccaagggaacgctggtaatcggtgacacagctcctggggtcagc
agtttgtgtgcagggaacactccgaagctcagacatgacgcagttctttc
tcagatgactgctctctcaagataagactgagaaggatggggagaaactt
aaaaaaaaaattctaataaaaagccaattcttttaaattatactttgact
gattttgtgctataaggggcagctgatttctaaagatcatatttcttttc
aaagagttttatcgaaaggaagactaattgtaatgtgcttttcctcatag
tccaggaaaacaactgatacttcaaaagttataaaaacatctactttcat
gaaatagttactatttcactacaaaccaatttttcactaaatacacgctt
cctaatccaggagcttcctgggaaaagcaatggtctctccctgggtccta
aagactccggtgttcatggagagtatgggaaggtctgcacccccatctcc
taggatgggccaggtcagaggtcacgtgtggagatgctgccaggctccca
gcaggcacagtaagtcatcaccttgctttagcagttatgacttcctctgc
ctccaaacacatccctagttagccaggcacaagaggaacagaaaaggaag
tgtgcccacattcctggtttccatggtctcaaaccaggagaatgtgcagg
agagcccagcgatgttaggaccttgggagtttggattcgtgggccatgag
agtgccaacagcatctttcactgcgaggtatatgatgttcttcacctgta
gcttatcctcatgatggtgtgagtgtatatcatcatttgttataggaaag
ataagaaacagaaatcaatgcaggtcttatgagatcaagctccacatcag
gaaagaatgagggtcagggaacctggaagcttaaaaattgttccgatcct
ggactgaaaattgcttattactgtggatggagcaccagcttgcaatcagc
agatctcggcacacacagccaatgaccaccgcagcaagacacatgtgatg
ggca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_48368486_48369733
seq2: B6Ng01-059G10.b_45_1248 (reverse)

seq1  TGCCCATCAACATGTGTGTCTTTTGCCTGCCCGTGTGTGGTCCATTTGCG  50
      |||||||| |||  ||||||||    ||||      ||||| |||| || 
seq2  TGCCCATC-ACA--TGTGTCTT---GCTGC-----GGTGGT-CATTGGC-  37

seq1  CTGTGGTGTGTGCCTGAGTACCTGCTGGGATTGGCAAGCTTGGTGGCCTC  100
           ||||||||| ||| | |||||  |||| |||||| |||||  |||
seq2  ----TGTGTGTGCC-GAG-ATCTGCT--GATT-GCAAGC-TGGTG--CTC  75

seq1  CATCCACAGTAAATAAAGCAAATGTTATCAGTCCAGGGATCTGAACAATC  150
      ||||||||||||   ||||||   || |||||||| ||||| ||||||  
seq2  CATCCACAGTAA--TAAGCAA---TTTTCAGTCCA-GGATCGGAACAA--  117

seq1  TCTTTAAGCTTCCAGGTTCCCTTGACCCTCATCTTTTCCTGATGTTGGAG  200
      | ||||||||||||||||||| ||||||||||  |||||||||| |||||
seq2  TTTTTAAGCTTCCAGGTTCCC-TGACCCTCATTCTTTCCTGATG-TGGAG  165

seq1  CTTGGATCTCATAAGACCCTGCATTGGATTTCTGTTTCTTATCTTTCCTA  250
      ||| |||||||||||| |||||||| ||||||||||||||||||||||||
seq2  CTT-GATCTCATAAGA-CCTGCATT-GATTTCTGTTTCTTATCTTTCCTA  212

seq1  ATTAACAAATGATGGATATAACACTCACACCAATCATGAGGATAAGCTAC  300
        ||||||||||| ||||| ||||||||||| ||||||||||||||||||
seq2  --TAACAAATGAT-GATAT-ACACTCACACC-ATCATGAGGATAAGCTAC  257

seq1  AGGTGAAGAACATCATATACCTCGCAGTGAAAGATGCTGTTGGCACTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAGAACATCATATACCTCGCAGTGAAAGATGCTGTTGGCACTCTC  307

seq1  ATGGCCCACGAATCCAAACTCCCAAGGTCCTAACATCGCTGGGCTCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCACGAATCCAAACTCCCAAGGTCCTAACATCGCTGGGCTCTCCT  357

seq1  GCACATTCTCCTGGTTTGAGACCATGGAAACCAGGAATGTGGGCACACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCACATTCTCCTGGTTTGAGACCATGGAAACCAGGAATGTGGGCACA-CT  406

seq1  TCCTTTTCTGTTCCTCTTGTGCCTGGCTAACTAGGGATGTGTTTGGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTGTTCCTCTTGTGCCTGGCTAACTAGGGATGTGTTTGGAGGC  456

seq1  AGAGGAAGTCATAACTGCTAAAGCAAGGTGATGACTTACTGTGCCTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGTCATAACTGCTAAAGCAAGGTGATGACTTACTGTGCCTGCTG  506

seq1  GGAGCCTGGCAGCATCTCCACACGTGACCTCTGACCTGGCCCATCCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGGCAGCATCTCCACACGTGACCTCTGACCTGGCCCATCCTAGG  556

seq1  AGATGGGGGTGCAGACCTTCCCATACTCTCCATGAACACCGGAGTCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGGGTGCAGACCTTCCCATACTCTCCATGAACACCGGAGTCTTTA  606

seq1  GGACCCAGGGAGAGACCATTGCTTTTCCCAGGAAGCTCCTGGATTAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAGGGAGAGACCATTGCTTTTCCCAGGAAGCTCCTGGATTAGGAA  656

seq1  GCGTGTATTTAGTGAAAAATTGGTTTGTAGTGAAATAGTAACTATTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTATTTAGTGAAAAATTGGTTTGTAGTGAAATAGTAACTATTTCAT  706

seq1  GAAAGTAGATGTTTTTATAACTTTTGAAGTATCAGTTGTTTTCCTGGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAGATGTTTTTATAACTTTTGAAGTATCAGTTGTTTTCCTGGACT  756

seq1  ATGAGGAAAAGCACATTACAATTAGTCTTCCTTTCGATAAAACTCTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAAAAGCACATTACAATTAGTCTTCCTTTCGATAAAACTCTTTGA  806

seq1  AAAGAAATATGATCTTTAGAAATCAGCTGCCCCTTATAGCACAAAATCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATATGATCTTTAGAAATCAGCTGCCCCTTATAGCACAAAATCAG  856

seq1  TCAAAGTATAATTTAAAAGAATTGGCTTTTTATTAGAATTTTTTTTTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTATAATTTAAAAGAATTGGCTTTTTATTAGAATTTTTTTTTTAA  906

seq1  GTTTCTCCCCATCCTTCTCAGTCTTATCTTGAGAGAGCAGTCATCTGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCCCATCCTTCTCAGTCTTATCTTGAGAGAGCAGTCATCTGAGA  956

seq1  AAGAACTGCGTCATGTCTGAGCTTCGGAGTGTTCCCTGCACACAAACTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTGCGTCATGTCTGAGCTTCGGAGTGTTCCCTGCACACAAACTGC  1006

seq1  TGACCCCAGGAGCTGTGTCACCGATTACCAGCGTTCCCTTGGGACTCCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCAGGAGCTGTGTCACCGATTACCAGCGTTCCCTTGGGACTCCTC  1056

seq1  ATGTGTGTCCAAATGGGGTGGAAAGTTTGATCTCTGATATAAAGAAGTTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTCCAAATGGGGTGGAAAGTTTGATCTCTGATATAAAGAAGTTT  1106

seq1  TGTTTTTGTTGTTTGGAGTTTTGTCTAGAATATTATCAGCAAAACTTTCC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTGTTTGGAGTTTTGTCTAGAATATTATCAGCAAAACTTTCC  1156

seq1  AGCTCAGTGGAGTTTTTACTAAGGATTTACTTGGAAATGATAGAATTC  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTGGAGTTTTTACTAAGGATTTACTTGGAAATGATAGAATTC  1204