BAC Information

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BAC

Clone NameB6Ng01-059J09
Chromosome16 (Build37)
Map Location 40,431,051 - 40,549,590
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059J09.bB6Ng01-059J09.g
ACCDH880817DH880818
length1,0951,018
definitionDH880817|Mus musculus domesticus DNA, BAC clone: B6Ng01-059J09, 5' end.DH880818|Mus musculus domesticus DNA, BAC clone: B6Ng01-059J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,548,476 - 40,549,590)(40,431,051 - 40,432,088)
sequence
gaattcatcagggcaaataaatatcatgcccgaacagctgggaagcatga
gcaagaatacaaaactgctggtatattatctatacccccccatactgaga
gctgtaacttaataagtggacgattacagaggttatgagaaaagcagaaa
tgattacagtgaagtttaaagaacacctgatatgaaagataacttgattt
ctcacagatgcctcaatttcatggaaggctgtttagagtgttcattagga
aggtgggctccaatgacagatgtccaagcaacatacaatttcatatatgt
caattatgagctgtgggtctgcagcaaacaagctacattggctgagtctc
ctgctgtctttgtttttttaaatttctctttctttccttctttcctttcc
ttttttcttttcttttctcttctttcctttctttctttccttccttattt
ccttaatttatttatttccttccttccttccttcttcccatccttccttc
ttcttttctttttctttccttcctttacaagagggtttttttctgtgtat
cactggctgtcctggaactagccctgtagaacaagctagcttcaggttca
cagaggttctcctgactttgcctatcacttgctagaattaaaagtgatac
cactaccacctggaaaatctcactttctttatccatacataagagggcga
tgttaattgctttcaagcatacacagaagaaaacccacaacttccttctt
atcacttctcatggtttccctccactgatggtagttagtagacctcaaat
attgatataaatgataatgtcaatggtttggtagttctgaatcatgatat
tattgttttactcggcccaaacattactgtttactcacgatagataacag
aagccacgtaaggtgccgccttcagcattggttataaaagatataagttt
tgaggacttctacactgtaaatgaaatttcttctattcgagcagtgaata
tggataattattgttgacaatttagtaggttacatatggtcttctgtacc
acaaaaaataaacctaagcttcgtgtttgtagtctgctccagtgt
gaattcagagaactgtagaacacattaaacccagaaattggctgaagcac
taccttatcaaaaatgattcacagaggagtgaagatcaccatttattgat
tgtcaatactggatgaattatctacatcaacaattctcaaaggataactg
taaatgtttctcagtcattcatgagatatttggaaaactagatgtatatt
taagctgctctgagattcagaaagaagatgggtagagctcaatttcatct
cattatttgtcttatttactcagtgtgttttattgttttttttgttgttg
ttgttgcattattctttgcagagtgtatataaaaaaggaaacagtttgat
ttgtggcatctaaagtaccagctgataggtaattcttgtttccaaagaca
gagttggagccaaggatatatttctgacctcatcatctctaagatcttgt
ttagctgaactggtctattgtttttctgtgaccattactctcaatgaata
gtcggtcttgacctttctctgaccatactgcccttctcggtcacttcctg
ctcaatcttctgccagcttccagaggacttgatggtcctcttctttcaaa
ctgcaggacacacattattttaagggagacataattggcttctggctgca
ggtatagtaattggcattcactccagcctttagccagttctggtgtttgc
aaatttagaagcagagttgcctgacctctggttccagggaacaacaaaga
cttggcaaaaagaccttttctatgcaaacaacctgccttgtagaatggaa
ccagaagcaaggttaggaaggacatgtgctgcttaaaatgcatcttggat
ttgctacaggggcaaagtttttagtcagaccttctctctaaacttcttga
tattaggggacccagagtacttgcaacacagaaatgctaaaagcagaaag
acttaaaggtagctatatctacctttatatacttttaaggtgaactgatg
tagaaaactatagcacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_40548476_40549590
seq2: B6Ng01-059J09.b_45_1139 (reverse)

seq1  ACACTGGGAAGCAGGACTAACCAAACACAGCAGCTTAAGTATTATTTTTT  50
      |||||||  |||| |||||  ||||||| | |||||| || |||||||||
seq2  ACACTGG--AGCA-GACTA--CAAACAC-GAAGCTTAGGT-TTATTTTTT  43

seq1  GTGTGTACAGGAAGACCATATGTAAACCCTACTAAATTTGTCAACCATAA  100
      ||| ||||| |||||||||||||||  ||||||||| |||||||| || |
seq2  GTG-GTACA-GAAGACCATATGTAA--CCTACTAAA-TTGTCAACAAT-A  87

seq1  ATTATTCCATAATCACTGCTCTGAATAGAAGAATATTTCATTTACAGTGT  150
      |||| |||||| ||||||||| ||||||||||| ||||||||||||||||
seq2  ATTA-TCCATATTCACTGCTC-GAATAGAAGAA-ATTTCATTTACAGTGT  134

seq1  AGAAGTCTCTCAAAACTTATATCTTTTATAACCAATGCTTGAAGGCGGCA  200
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  AGAAGTC-CTCAAAACTTATATCTTTTATAACCAATGC-TGAAGGCGGCA  182

seq1  CCTTACGTGGCTTCTGTTATTCTATCGTGAGTAAAACAGTAATGTTTGGG  250
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  CCTTACGTGGCTTCTGTTA-TCTATCGTGAGT-AAACAGTAATGTTTGGG  230

seq1  CCGAGTAAAACAATAATATCATGATTCAGAACTACCAAACCATTGACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTAAAACAATAATATCATGATTCAGAACTACCAAACCATTGACATT  280

seq1  ATCATTTATATCAATATTTGAGGTCTACTAACTACCATCAGTGGAGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTATATCAATATTTGAGGTCTACTAACTACCATCAGTGGAGGGAA  330

seq1  ACCATGAGAAGTGATAAGAAGGAAGTTGTGGGTTTTCTTCTGTGTATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAGAAGTGATAAGAAGGAAGTTGTGGGTTTTCTTCTGTGTATGCT  380

seq1  TGAAAGCAATTAACATCGCCCTCTTATGTATGGATAAAGAAAGTGAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAATTAACATCGCCCTCTTATGTATGGATAAAGAAAGTGAGATT  430

seq1  TTCCAGGTGGTAGTGGTATCACTTTTAATTCTAGCAAGTGATAGGCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTGGTAGTGGTATCACTTTTAATTCTAGCAAGTGATAGGCAAAG  480

seq1  TCAGGAGAACCTCTGTGAACCTGAAGCTAGCTTGTTCTACAGGGCTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGAACCTCTGTGAACCTGAAGCTAGCTTGTTCTACAGGGCTAGTT  530

seq1  CCAGGACAGCCAGTGATACACAGAAAAAAACCCTCTTGTAAAGGAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGCCAGTGATACACAGAAAAAAACCCTCTTGTAAAGGAAGGAA  580

seq1  AGAAAAAGAAAAGAAGAAGGAAGGATGGGAAGAAGGAAGGAAGGAAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGAAAAGAAGAAGGAAGGATGGGAAGAAGGAAGGAAGGAAGGAA  630

seq1  ATAAATAAATTAAGGAAATAAGGAAGGAAAGAAAGAAAGGAAAGAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATTAAGGAAATAAGGAAGGAAAGAAAGAAAGGAAAGAAGAGA  680

seq1  AAAGAAAAGAAAAAAGGAAAGGAAAGAAGGAAAGAAAGAGAAATTTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAAAAAAGGAAAGGAAAGAAGGAAAGAAAGAGAAATTTAAAA  730

seq1  AAACAAAGACAGCAGGAGACTCAGCCAATGTAGCTTGTTTGCTGCAGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGACAGCAGGAGACTCAGCCAATGTAGCTTGTTTGCTGCAGACC  780

seq1  CACAGCTCATAATTGACATATATGAAATTGTATGTTGCTTGGACATCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCATAATTGACATATATGAAATTGTATGTTGCTTGGACATCTGT  830

seq1  CATTGGAGCCCACCTTCCTAATGAACACTCTAAACAGCCTTCCATGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAGCCCACCTTCCTAATGAACACTCTAAACAGCCTTCCATGAAAT  880

seq1  TGAGGCATCTGTGAGAAATCAAGTTATCTTTCATATCAGGTGTTCTTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATCTGTGAGAAATCAAGTTATCTTTCATATCAGGTGTTCTTTAA  930

seq1  ACTTCACTGTAATCATTTCTGCTTTTCTCATAACCTCTGTAATCGTCCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTGTAATCATTTCTGCTTTTCTCATAACCTCTGTAATCGTCCAC  980

seq1  TTATTAAGTTACAGCTCTCAGTATGGGGGGGTATAGATAATATACCAGCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAGTTACAGCTCTCAGTATGGGGGGGTATAGATAATATACCAGCA  1030

seq1  GTTTTGTATTCTTGCTCATGCTTCCCAGCTGTTCGGGCATGATATTTATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTATTCTTGCTCATGCTTCCCAGCTGTTCGGGCATGATATTTATT  1080

seq1  TGCCCTGATGAATTC  1115
      |||||||||||||||
seq2  TGCCCTGATGAATTC  1095

seq1: chr16_40431051_40432088
seq2: B6Ng01-059J09.g_68_1085

seq1  GAATTCAGAGAACTGTAGAACACATTAAACCCAGAAATTGGCTGAAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAACTGTAGAACACATTAAACCCAGAAATTGGCTGAAGCAC  50

seq1  TACCTTATCAAAAATGATTCACAGAGGAGTGAAGATCACCATTTATTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTATCAAAAATGATTCACAGAGGAGTGAAGATCACCATTTATTGAT  100

seq1  TGTCAATACTGGATGAATTATCTACATCAACAATTCTCAAAGGATAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATACTGGATGAATTATCTACATCAACAATTCTCAAAGGATAACTG  150

seq1  TAAATGTTTCTCAGTCATTCATGAGATATTTGGAAAACTAGATGTATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTTCTCAGTCATTCATGAGATATTTGGAAAACTAGATGTATATT  200

seq1  TAAGCTGCTCTGAGATTCAGAAAGAAGATGGGTAGAGCTCAATTTCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGCTCTGAGATTCAGAAAGAAGATGGGTAGAGCTCAATTTCATCT  250

seq1  CATTATTTGTCTTATTTACTCAGTGTGTTTTATTGTTTTTTTTGTTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTGTCTTATTTACTCAGTGTGTTTTATTGTTTTTTTTGTTGTTG  300

seq1  TTGTTGCATTATTCTTTGCAGAGTGTATATAAAAAAGGAAACAGTTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCATTATTCTTTGCAGAGTGTATATAAAAAAGGAAACAGTTTGAT  350

seq1  TTGTGGCATCTAAAGTACCAGCTGATAGGTAATTCTTGTTTCCAAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCATCTAAAGTACCAGCTGATAGGTAATTCTTGTTTCCAAAGACA  400

seq1  GAGTTGGAGCCAAGGATATATTTCTGACCTCATCATCTCTAAGATCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGAGCCAAGGATATATTTCTGACCTCATCATCTCTAAGATCTTGT  450

seq1  TTAGCTGAACTGGTCTATTGTTTTTCTGTGACCATTACTCTCAATGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGAACTGGTCTATTGTTTTTCTGTGACCATTACTCTCAATGAATA  500

seq1  GTCGGTCTTGACCTTTCTCTGACCATACTGCCCTTCTCGGTCACTTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTCTTGACCTTTCTCTGACCATACTGCCCTTCTCGGTCACTTCCTG  550

seq1  CTCAATCTTCTGCCAGCTTCCAGAGGACTTGATGGTCCTCTTCTTTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCTTCTGCCAGCTTCCAGAGGACTTGATGGTCCTCTTCTTTCAAA  600

seq1  CTGCAGGACACACATTATTTTAAGGGAGACATAATTGGCTTCTGGCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGACACACATTATTTTAAGGGAGACATAATTGGCTTCTGGCTGCA  650

seq1  GGTATAGTAATTGGCATTCACTCCAGCCTTTAGCCAGTTCTGGTGTTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGTAATTGGCATTCACTCCAGCCTTTAGCCAGTTCTGGTGTTTGC  700

seq1  AAATTTAGAAGCAGAGTTGCCTGACCTCTGGTTCCAGGGAACAACAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAATTTAGAAGCAGAGTTGCCTGACCTCTGGTTCCAGGGAACAAC-AAAG  749

seq1  ACTTGGCAAAAAGACCTTTTCTATGCAAACAACCTGCCTTGTAAGAATGG  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTTGGCAAAAAGACCTTTTCTATGCAAACAACCTGCCTTGT-AGAATGG  798

seq1  AACCAGAAGCAAGGTTAGGAAGGACATGTGCTGCTTAAAATGCATCTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAAGCAAGGTTAGGAAGGACATGTGCTGCTTAAAATGCATCTTGG  848

seq1  ATTTTGCTACAGGGGGCAAAGTTTTTAGTCAGACCTTCTCTTCTAAACTT  900
      | ||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  A-TTTGCTACA-GGGGCAAAGTTTTTAGTCAGACCTTCTC-TCTAAACTT  895

seq1  CTTGAATATTAGGGGACCCCAAGAGTACTTGCAAACACAAGAAATGCTAA  950
      |||| ||||||||||||||  ||||||||||| ||||| |||||||||||
seq2  CTTG-ATATTAGGGGACCC--AGAGTACTTGC-AACAC-AGAAATGCTAA  940

seq1  AAGCAGAAAGAACCTTAAAGGTAGCTATATCTACCTTTTATTATACTTTT  1000
      |||||||||||  |||||||||||||||||||||||||   |||||||||
seq2  AAGCAGAAAGA--CTTAAAGGTAGCTATATCTACCTTT--ATATACTTTT  986

seq1  TAAAGTTGAAACTGATGGTTAGAAAAACTATAGCACAA  1038
        ||| || ||||||||  ||| |||||||||||||||
seq2  --AAGGTG-AACTGATG--TAG-AAAACTATAGCACAA  1018