BAC Information

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BAC

Clone NameB6Ng01-060H04
Chromosome16 (Build37)
Map Location 24,205,846 - 24,206,926
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043541, BC106179, St6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009
Downstream geneLOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060H04.bB6Ng01-060H04.g
ACCDH881418DH881419
length4261,073
definitionDH881418|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H04, 5' end.DH881419|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aaagaaagagggggaggaaggattgaaggagccagagaagtcaagaacaa
cacaagaaaacctacagaatcaactaaccttggcccatatggccaagttg
actgaattgccagagagcatgcatgggacggacctaggccctcagtacag
aggtaacaattgtgcagctcagtcttcatgtgggtgtcctgacaacagag
gaaggggctgtctctgaaacctgttgaccatccttggatccctttccctt
aactgggctgttttgtgaagcttccgcaagagaagatgggcctagtttag
ccacaaattgctatgccaaggagggttgatatctgtagaaaatccagtga
tgggccaaatggataggatatcccttttctgaagagaaagagaggatggg
acaatgggggtggagagggaggagat
gaattctctttgaagatgagaggctggtgagggagaaaagaatttgccac
tcaagtgagtcaactggaacagaaggtgtgtcctggctccctgggcctgg
tgctctctggctgcccaaccagacagctggggtcacctcccctggggcca
cagggttccacttgggaacatcaggtcttttttcagtgagtctctctaag
ccacagagcttctggtgcactcctggcctctgcagttttaccaacataat
tgatcccagagctctgctcctacatacccattggcttcaaagggagtgat
ggcacaggggccttccctagtcggagcacctgtacatcacagcactcccc
ccgccccccgtgggacagtatggaggacaggcaacaggctgcataaatag
cactacactctaaagtcatccctctggagctctgtgcttcctctcctgag
ttctgattttccttcggggatagctgaggcacccagagaaaaacaaaccc
ttaaagtgactctttccctgcaaaggttgaagtgtttcaaagtccctgct
gattcctaccttctggtggcgagtcccaggcatcaggacccctgttgaag
atgcttcaggatgtgaccactgagcctgacaactcttttaggtattctca
cgaatatggcaggcctacaaatggtaaaaaaagaaaacacccagacaaac
tgtgccaggatgcactgtgacaagggaaaccatccacataccacagtagc
cactgagcagcccaaacaaccctcaatgactaaggtttttttccacttac
acttggtttgtttgctttcactacacacttgtattagcaaacaagagtcc
tgagcagggaaagcagctctttctctggttcccctgcaaggacacggtcc
tccgttcactgcggagctttagaatcaggaaacatttaatcacataggct
ttcaaagcacagctccaagcaactttcaccccggagttgctatgatcaga
gagtcaaatgggtgcagtggccagctgacagcttgcaggcatgtgactgg
cagtgaccaaactaaatcaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_24205846_24206926
seq2: B6Ng01-060H04.g_69_1141

seq1  GAATTCTCTTTGAAGATGAGAGGCTGGTGAGGGAGAAAAGAATTTGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGAAGATGAGAGGCTGGTGAGGGAGAAAAGAATTTGCCAC  50

seq1  TCAAGTGAGTCAACTGGAACAGAAGGTGTGTCCTGGCTCCCTGGGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGAGTCAACTGGAACAGAAGGTGTGTCCTGGCTCCCTGGGCCTGG  100

seq1  TGCTCTCTGGCTGCCCAACCAGACAGCTGGGGTCACCTCCCCTGGGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTGGCTGCCCAACCAGACAGCTGGGGTCACCTCCCCTGGGGCCA  150

seq1  CAGGGTTCCACTTGGGAACATCAGGTCTTTTTTCAGTGAGTCTCTCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTCCACTTGGGAACATCAGGTCTTTTTTCAGTGAGTCTCTCTAAG  200

seq1  CCACAGAGCTTCTGGTGCACTCCTGGCCTCTGCAGTTTTACCAACATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGCTTCTGGTGCACTCCTGGCCTCTGCAGTTTTACCAACATAAT  250

seq1  TGATCCCAGAGCTCTGCTCCTACATACCCATTGGCTTCAAAGGGAGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCAGAGCTCTGCTCCTACATACCCATTGGCTTCAAAGGGAGTGAT  300

seq1  GGCACAGGGGCCTTCCCTAGTCGGAGCACCTGTACATCACAGCACTCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGGGCCTTCCCTAGTCGGAGCACCTGTACATCACAGCACTCCCC  350

seq1  CCGCCCCCCGTGGGACAGTATGGAGGACAGGCAACAGGCTGCATAAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCCCGTGGGACAGTATGGAGGACAGGCAACAGGCTGCATAAATAG  400

seq1  CACTACACTCTAAAGTCATCCCTCTGGAGCTCTGTGCTTCCTCTCCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACACTCTAAAGTCATCCCTCTGGAGCTCTGTGCTTCCTCTCCTGAG  450

seq1  TTCTGATTTTCCTTCGGGGATAGCTGAGGCACCCAGAGAAAAACAAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTTTCCTTCGGGGATAGCTGAGGCACCCAGAGAAAAACAAACCC  500

seq1  TTAAAGTGACTCTTTCCCTGCAAAGGTTGAAGTGTTTCAAAGTCCCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTGACTCTTTCCCTGCAAAGGTTGAAGTGTTTCAAAGTCCCTGCT  550

seq1  GATTCCTACCTTCTGGTGGCGAGTCCCAGGCATCAGGACCCCTGTTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTACCTTCTGGTGGCGAGTCCCAGGCATCAGGACCCCTGTTGAAG  600

seq1  ATGCTTCAGGATGTGACCACTGAGCCTGACAACTCTTTTAGGTATTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCAGGATGTGACCACTGAGCCTGACAACTCTTTTAGGTATTCTCA  650

seq1  CGAATATGGCAGGCCTACAAATGGTAAAAAAAGAAAACACCCAGACAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATATGGCAGGCCTACAAATGGTAAAAAAAGAAAACACCCAGACAAAC  700

seq1  TGTGCCAGGATGCACTGTGACAAGGGAAACCATCCACATACCACAGTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAGGATGCACTGTGACAAGGGAAACCATCCACATACCACAGTAGC  750

seq1  CACTGAGCAGCCCAAACAACCCTCAATGACTAAGGTTTTTTTCCACTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCAGCCCAAACAACCCTCAATGACTAAGGTTTTTTTCCACTTAC  800

seq1  ACTTGGTTTGTTTGCTTTCACTACACACTTGTATTAGCAAACAAGAGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTTTGTTTGCTTTCACTACACACTTGTATTAGCAAACAAGAGTCC  850

seq1  TGAGCAGGGAAAGCAGCTCCTTCTCTGGTTCCCCTGCAAGGACACGGTCC  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGAGCAGGGAAAGCAGCTCTTTCTCTGGTTCCCCTGCAAGGACACGGTCC  900

seq1  TCCGTTCACTGCGGAGCTTTAGAATCAGGAAACATTTATTCACATAGGCT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCCGTTCACTGCGGAGCTTTAGAATCAGGAAACATTTAATCACATAGGCT  950

seq1  TTCCAAAGCACAGCTCCAAGCAACTTTCACCCCGGAGTTGCTATGATCCA  1000
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TT-CAAAGCACAGCTCCAAGCAACTTTCACCCCGGAGTTGCTATGAT-CA  998

seq1  GAGAGTCAAATGGGTGCAGTGGCCAGCTGACAGCCTGCAAGGGAATGTGA  1050
      |||||||||||||||||||||||||||||||||| ||||  || ||||||
seq2  GAGAGTCAAATGGGTGCAGTGGCCAGCTGACAGCTTGCA--GGCATGTGA  1046

seq1  CTGGGCAGTGAACCAAACTAAAAACCAAGTC  1081
      || ||||||| ||||||||  ||| ||||||
seq2  CT-GGCAGTG-ACCAAACT--AAATCAAGTC  1073