BAC Information

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BAC

Clone NameB6Ng01-060H12
Chromosome16 (Build37)
Map Location 89,468,978 - 89,617,859
singlet/doubletdoublet
Overlap gene5430433J05Rik
Upstream geneCldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2
Downstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060H12.bB6Ng01-060H12.g
ACCDH881434DH881435
length1,1181,117
definitionDH881434|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H12, 5' end.DH881435|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,468,978 - 89,470,109)(89,616,739 - 89,617,859)
sequence
gaattcttttctttaaactttgcatgataagaagtatcattgccttccga
ggtgacatttgtataaactttccacacctccaatttacatgtatgcatac
tagattcagcatcttttctagaagagaaagagcaatacaatcaatgacct
acattcatacatttggttactttaaccgctgattcccacaagtagattag
atatcagatatctattcaattagtattacctatcaaataaaacatcagca
tctttaagtaccatttaattgtgataaattttattgagtctagtttgaat
catcatatataagcatgacaaaaaagttccaaaatttcttttgtccttgg
ttaagaatattgacttaattaaatcactatttctttgattacagcaaatg
attctgttattctagtatgtactgcaattatgacctgaacaaaaatctaa
agggtaagaacaaaaatcacaatgcgaataattgcttaatcactctgatg
ctctatcatgttggtgacaacggcaattgcaatggtgatcacttgtcttt
actaattctactttctacaaagagatttttctgaacagactcataatgtt
gctaattgtacgtgacccagaaatttctcaaatgaagagaaaagtagaat
cacagattttcatcattaattcaacatcattgtttctgtatgtctaaatg
tcagttattcactctgtaggagtagtatattgtgttgaatcatgaagtct
ttggcaaacagaaaaatataatctagaaccttttataggatttaaaactg
taagtattgtctagaaggaaatgtgtgccttggattgaagcagaagtctc
tcaaaggaacagtacctaaccacaacccagacatctgatttctaaagaaa
actccatgatttcaatttagcttaagtttcagaaatattggtctatacag
tctcaagatattaaatgaatcattggtgtattttttttctctgtgcttaa
tatttggaaatttaacactttgtacaccaaaatcagagtatttaaatcat
ccctaatagcatattgccctatgattatagttcttcattagccgatgacc
tcccaattaaaaccataa
gaattctatttttagaactctagttcttccccggagtggagatgccatcc
gagtcatttagaaatgagatgaaatgcccttgctatccctgggctgatgt
ccagctggctcttctcgtcctgttcctgttgacagttattgcttgcttgt
gtgaactaaggtcaagtctagctcccttctctacaccatgcttttgtctg
cttaattcttatgagatccatggtcttataagtctttcatccctcaggaa
gtatgatggctattccaaatagattgtatctggaatgaactacagtccag
aaatggagcatacacctgtgatccagatcttggggctggaagacacagac
aggcttttgatccaggtcttgaagcagagtagccatgaaaagcttaggcc
taggcaaggtgatacacatctttaatcccaggaaactgaggcaagctgat
ctctaagttcaaggccagcctgggacagagcaagttccaagtaaagaaca
gtttaggtccaggcatggtggtataatcttggccacaccttctgctggag
gcctacattcataaagacattggaatctgcttgcacttacttgcccacac
atctgttggaagctacttctttagcattccagcttattcagaagaccaga
tgaaacacctagcctcgtgggactgagcaactactagattcttggacttt
ccattcacagctgaccagtgctgtgttagttggactgcagcctgtaagtc
ataccaacaatttcccttaatatagagagacattccctaagttctgtgac
tctagagaacccttactaatacagaaggaagtcaggaaaggccagcaagt
ttcacacagacacacaggtgggtgtggtaaaaatagagtgtccattacag
aagcaaatacaatgcattttctttgactatttcgtgtagtgaggatgatc
ttgcacgaacacaatgatgagtattggtagaagaaaattcaatacagtaa
gtgatagacaagatcacattaccaagacctgaactcatttcttctgttat
tcagggttcttcaggctgaaaacatcataaaaacgaacgacttttgtgag
tgtactcaacatcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89468978_89470109
seq2: B6Ng01-060H12.b_47_1164

seq1  GAATTCTTTTCTTTAAACTTTGCATGATAAGAAGTATCATTGCCTTCCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTTTAAACTTTGCATGATAAGAAGTATCATTGCCTTCCGA  50

seq1  GGTGACATTTGTATAAACTTTCCACACCTCCAATTTACATGTATGCATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATTTGTATAAACTTTCCACACCTCCAATTTACATGTATGCATAC  100

seq1  TAGATTCAGCATCTTTTCTAGAAGAGAAAGAGCAATACAATCAATGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCAGCATCTTTTCTAGAAGAGAAAGAGCAATACAATCAATGACCT  150

seq1  ACATTCATACATTTGGTTACTTTAACCGCTGATTCCCACAAGTAGATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATACATTTGGTTACTTTAACCGCTGATTCCCACAAGTAGATTAG  200

seq1  ATATCAGATATCTATTCAATTAGTATTACCTATCAAATAAAACATCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGATATCTATTCAATTAGTATTACCTATCAAATAAAACATCAGCA  250

seq1  TCTTTAAGTACCATTTAATTGTGATAAATTTTATTGAGTCTAGTTTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGTACCATTTAATTGTGATAAATTTTATTGAGTCTAGTTTGAAT  300

seq1  CATCATATATAAGCATGACAAAAAAGTTCCAAAATTTCTTTTGTCCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATATATAAGCATGACAAAAAAGTTCCAAAATTTCTTTTGTCCTTGG  350

seq1  TTAAGAATATTGACTTAATTAAATCACTATTTCTTTGATTACAGCAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATATTGACTTAATTAAATCACTATTTCTTTGATTACAGCAAATG  400

seq1  ATTCTGTTATTCTAGTATGTACTGCAATTATGACCTGAACAAAAATCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTATTCTAGTATGTACTGCAATTATGACCTGAACAAAAATCTAA  450

seq1  AGGGTAAGAACAAAAATCACAATGCGAATAATTGCTTAATCACTCTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAGAACAAAAATCACAATGCGAATAATTGCTTAATCACTCTGATG  500

seq1  CTCTATCATGTTGGTGACAACGGCAATTGCAATGGTGATCACTTGTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCATGTTGGTGACAACGGCAATTGCAATGGTGATCACTTGTCTTT  550

seq1  ACTAATTCTACTTTCTACAAAGAGATTTTTCTGAACAGACTCATAATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTCTACTTTCTACAAAGAGATTTTTCTGAACAGACTCATAATGTT  600

seq1  GCTAATTGTACGTGACCCAGAAATTTCTCAAATGAAGAGAAAAGTAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTGTACGTGACCCAGAAATTTCTCAAATGAAGAGAAAAGTAGAAT  650

seq1  CACAGATTTTCATCATTAATTCAACATCATTGTTTCTGTATGTCTAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTTTCATCATTAATTCAACATCATTGTTTCTGTATGTCTAAATG  700

seq1  TCAGTTATTCACTCTGTAGGAGTAGTATATTGTGTTGAATCATGAAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTATTCACTCTGTAGGAGTAGTATATTGTGTTGAATCATGAAGTCT  750

seq1  TTGGCAAACAGAAAAATATAATCTAGAACCTTTTATAGGATTTAAAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAACAGAAAAATATAATCTAGAACCTTTTATAGGATTTAAAACTG  800

seq1  TAAGTATTGTCTAGAAGGAAATGTGTGCCTTGGATTGAAGCAGAAGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTGTCTAGAAGGAAATGTGTGCCTTGGATTGAAGCAGAAGTCTC  850

seq1  TCAAAGGAACAGTACCTAACCACAACCCAGACATCTGATTTCTAAAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAACAGTACCTAACCACAACCCAGACATCTGATTTCTAAAGAAA  900

seq1  ACTCCATGATTTCAATTTAGCTTAAAGTTTCAGAAATATTGGTCTAATAC  950
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  ACTCCATGATTTCAATTTAGCTT-AAGTTTCAGAAATATTGGTCT-ATAC  948

seq1  AGTCTCAAGATATTTAAATGAATCATTGGTGTATTTTTTTCCTCTGTGCT  1000
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  AGTCTCAAGATA-TTAAATGAATCATTGGTGTATTTTTTTTCTCTGTGCT  997

seq1  TAAATATTTGGAAATTTTAACACTTTGTACACCAAAAATCAAGAGTATTT  1050
      | |||||||||||| |||||||||||||||||| |||||| |||||||||
seq2  T-AATATTTGGAAA-TTTAACACTTTGTACACC-AAAATC-AGAGTATTT  1043

seq1  AAAATCATCACTAATAGGCATATTGCCCTTATGATTATAAATTCTTCAAT  1100
       |||||||| |||||| ||||||||||| ||||||||| | |||||| ||
seq2  -AAATCATCCCTAATA-GCATATTGCCC-TATGATTAT-AGTTCTTC-AT  1088

seq1  TAGCAGATGACATTCACAAATATAAACCATAA  1132
      |||| ||||||  || ||| || |||||||||
seq2  TAGCCGATGAC-CTCCCAATTA-AAACCATAA  1118

seq1: chr16_89616739_89617859
seq2: B6Ng01-060H12.g_67_1183 (reverse)

seq1  AGCTGATGTTTGAGTACCACTCACATAAGCTGTCGTTTTTTATGTAGTTT  50
      |||||||| ||||||| |||||||| |||  ||   ||||||||  ||||
seq2  AGCTGATG-TTGAGTA-CACTCACAAAAGTCGTTCGTTTTTATGATGTTT  48

seq1  TCAGCATGGAGGACCCCTGAATAACAGAAGAAATTGTGTCAGGTCTTGGT  100
      ||||| | || || ||||||||||||||||||||    ||||||||||||
seq2  TCAGCCT-GAAGAACCCTGAATAACAGAAGAAATGAGTTCAGGTCTTGGT  97

seq1  AATTGTGATC-TGTCTATCACTTACTGTATTGAATTTTCTTCTAACAATA  149
      || ||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  AA-TGTGATCTTGTCTATCACTTACTGTATTGAATTTTCTTCTACCAATA  146

seq1  CTCATCATTGTGTTCGTGCAAGATCATCCTCACTACACCGAAATAGTCAA  199
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCATCATTGTGTTCGTGCAAGATCATCCTCACTACA-CGAAATAGTCAA  195

seq1  AGAAAATGCATTGTATTTGCTTCTGTAATGGACACTCTATTTTTACCACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGCATTGTATTTGCTTCTGTAATGGACACTCTATTTTTACCACA  245

seq1  CCCACCTGTGTGTCTGTGTGAAACTTGCTGGCCTTTCCTGACTTCCTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTGTGTGTCTGTGTGAAACTTGCTGGCCTTTCCTGACTTCCTTCT  295

seq1  GTATTAGTAAGGGTTCTCTAGAGTCACAGAACTTAGGGAATGTCTCTCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGTAAGGGTTCTCTAGAGTCACAGAACTTAGGGAATGTCTCTCTA  345

seq1  TATTAAGGGAAATTGTTGGTATGACTTACAGGCTGCAGTCCAACTAACAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGGGAAATTGTTGGTATGACTTACAGGCTGCAGTCCAACTAACAC  395

seq1  AGCACTGGTCAGCTGTGAATGGAAAGTCCAAGAATCTAGTAGTTGCTCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGTCAGCTGTGAATGGAAAGTCCAAGAATCTAGTAGTTGCTCAG  445

seq1  TCCCACGAGGCTAGGTGTTTCATCTGGTCTTCTGAATAAGCTGGAATGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACGAGGCTAGGTGTTTCATCTGGTCTTCTGAATAAGCTGGAATGCT  495

seq1  AAAGAAGTAGCTTCCAACAGATGTGTGGGCAAGTAAGTGCAAGCAGATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTAGCTTCCAACAGATGTGTGGGCAAGTAAGTGCAAGCAGATTC  545

seq1  CAATGTCTTTATGAATGTAGGCCTCCAGCAGAAGGTGTGGCCAAGATTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTTTATGAATGTAGGCCTCCAGCAGAAGGTGTGGCCAAGATTAT  595

seq1  ACCACCATGCCTGGACCTAAACTGTTCTTTACTTGGAACTTGCTCTGTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCATGCCTGGACCTAAACTGTTCTTTACTTGGAACTTGCTCTGTCC  645

seq1  CAGGCTGGCCTTGAACTTAGAGATCAGCTTGCCTCAGTTTCCTGGGATTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTTGAACTTAGAGATCAGCTTGCCTCAGTTTCCTGGGATTA  695

seq1  AAGATGTGTATCACCTTGCCTAGGCCTAAGCTTTTCATGGCTACTCTGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTGTATCACCTTGCCTAGGCCTAAGCTTTTCATGGCTACTCTGCT  745

seq1  TCAAGACCTGGATCAAAAGCCTGTCTGTGTCTTCCAGCCCCAAGATCTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACCTGGATCAAAAGCCTGTCTGTGTCTTCCAGCCCCAAGATCTGG  795

seq1  ATCACAGGTGTATGCTCCATTTCTGGACTGTAGTTCATTCCAGATACAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGGTGTATGCTCCATTTCTGGACTGTAGTTCATTCCAGATACAAT  845

seq1  CTATTTGGAATAGCCATCATACTTCCTGAGGGATGAAAGACTTATAAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGGAATAGCCATCATACTTCCTGAGGGATGAAAGACTTATAAGAC  895

seq1  CATGGATCTCATAAGAATTAAGCAGACAAAAGCATGGTGTAGAGAAGGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATCTCATAAGAATTAAGCAGACAAAAGCATGGTGTAGAGAAGGGA  945

seq1  GCTAGACTTGACCTTAGTTCACACAAGCAAGCAATAACTGTCAACAGGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACTTGACCTTAGTTCACACAAGCAAGCAATAACTGTCAACAGGAA  995

seq1  CAGGACGAGAAGAGCCAGCTGGACATCAGCCCAGGGATAGCAAGGGCATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACGAGAAGAGCCAGCTGGACATCAGCCCAGGGATAGCAAGGGCATT  1045

seq1  TCATCTCATTTCTAAATGACTCGGATGGCATCTCCACTCCGGGGAAGAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCATTTCTAAATGACTCGGATGGCATCTCCACTCCGGGGAAGAAC  1095

seq1  TAGAGTTCTAAAAATAGAATTC  1121
      ||||||||||||||||||||||
seq2  TAGAGTTCTAAAAATAGAATTC  1117