BAC Information

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BAC

Clone NameB6Ng01-061D19
Chromosome16 (Build37)
Map Location 29,838,975 - 29,962,152
singlet/doubletdoublet
Overlap geneGm1968
Upstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4, Opa1
Downstream geneLOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061D19.bB6Ng01-061D19.g
ACCDH881970DH881971
length1,1541,028
definitionDH881970|Mus musculus domesticus DNA, BAC clone: B6Ng01-061D19, 5' end.DH881971|Mus musculus domesticus DNA, BAC clone: B6Ng01-061D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,960,999 - 29,962,152)(29,838,975 - 29,840,002)
sequence
gaattctgtgaacatctcagaaggcactggtcacttctgagaacctagga
agatctctctaagttcagcctttgttcattttctgaatacctctgcttca
ttttggacctgatgagtcctcagatctgcacagtcgaatatggcagccat
tgcctcccatactatgagtctgtactgagatattctctaagagtagttgc
cagagcctgaagacatgtaaccacaagaggatatgggctatctcactgac
aattttataacattgagtcccatagtggtggcatatgtctttagccccgc
aacttaggaggtagaggcagtgaatttctgagttcaaggccagcctgatc
tacagagtaagttccaggacagctaggactacacagtaaaaccctgtttc
gaaaaacaaaacaacaacaaaaaagactgaatacattgagttagattaag
tatatttgacatttaaatggcccaagaggctcacgttttgttcctttggt
ggatgctggccctcattcttaggctgctatctagagactgtcagtatcta
gatcccaagatgaggtttaattgaatggggccatttgtccctcaagacat
aggacaatgtgtaagctcaatcatacttctaatcattttgtttttaaaaa
tctctgaaaccctactaatgttttggctgttaacaccatgtttttgaaaa
aaactcttttaactattataggctaaactgtatttacacacacacacaca
cacacacacacacacacacacacacacacacaccatatattgaagcccca
atattgtagaatgttatcatttttggaggactgagttaaatgaggtcatt
taggtgggccatataatccagcttgactaaagtctttccatttgatgaga
agaaatctagatacacaggagaccacacaggacaaagatgatatgaggtc
acagggagaagtctgtcacctgccaactgaggcagcctgagaggcgctat
cctgatggcatccttgatcatgttgtagtctccacagctgggagactatt
tccatgtttaacccactcaggctgggggaaggctgtgggagcagtcctaa
cgatcaaatgcaaggtttgaaggaagtcccggggagagaagatactaatt
ttcc
gaattcctgatctttctgcccctacttcctaagtcctggctgtccaggca
agagtcactacatatggctttcatcttttgttcgtttttgtttgtttgtt
tgtttgagacagagtttctctgtataaccagctctggctgtcctggactc
actttgtaaaccaggctggactcgaactcacagagatcctcctctctctg
ccaaccaagtgctagtatcaaagacgcgccccaccacgcccagctggcct
gaatctcttaaatttcatcagtgcacccgaggaatggtgaagagatccat
gccccctctattgacgttcgcattcacgttttctttaaaaaaaaaaaaaa
aaaaaaaaaaattcctcagactgagcagtctgagcaagtaaggctctact
agcttatctaagcgccccgcccccacttgccagttgcggtagtgcggtct
gcgaacagctaagacacttcccaaggtttctgtgtccccgcatgttgcca
ccctgtgctgccagcaacgcttgcagctttctggttttgtatttcatctc
agccttagcaggatgtgtgagcagagagagcatctggcagaatggcaccg
cgaaatgggaaccagacgctcggtcgagcgccaccgagagctgtttatcc
gtggaattaaccttttgttctgcgtttgctctgtggtaggcttgcactgt
gcttttaaattcgcaccctgccccgtgtctccaagaggcagcctggttct
gctgagtcagcgcttctcgggcctggcagaggcgactcggagcaactggt
agcaagaaaagcttgcagcagctcctctctggcagtcacctttggctctc
tgtagatttacgacggcagcagatgggctcaggtggacccaagtgagagt
ctcagacaggctcagtttcttctgactactgtaatgtgtctaggatcaga
gggaaggcgtgcacatctcctgaatgcactttgaaacactcagaagtgtg
aaaggaatttactaccacaggaagtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_29960999_29962152
seq2: B6Ng01-061D19.b_45_1198 (reverse)

seq1  GGAAAATTAGTTTCTTCTCTCCCC-GGACTTCC-TCCAACTCTGCA-TTG  47
      ||||||||||| |||||||||||| |||||||| || |||  |||| |||
seq2  GGAAAATTAGTATCTTCTCTCCCCGGGACTTCCTTCAAACCTTGCATTTG  50

seq1  ATCTGTTAGGACTGCT-CCACAG-CATCCCACAGCCTGAGTGGGTTAAAC  95
      ||| |||||||||||| |||||| | |||| |||||||||||||||||||
seq2  ATC-GTTAGGACTGCTCCCACAGCCTTCCCCCAGCCTGAGTGGGTTAAAC  99

seq1  AATGGGAATAGTCTCCCAGCTGTGGAGACTACAACATGATCAAGGATGCC  145
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATGGAAATAGTCTCCCAGCTGTGGAGACTACAACATGATCAAGGATGCC  148

seq1  ATCAGGATTGGCGCCTTCTCAGGCTTGCCTCAGTTGGCAGGTGACAGACT  195
      ||||||| | ||||| |||||||| |||||||||||||||||||||||||
seq2  ATCAGGA-TAGCGCC-TCTCAGGC-TGCCTCAGTTGGCAGGTGACAGACT  195

seq1  TCTCCCTGTGACCTCATATCATCTTTGTCCTGTGTGGTCTCCTGTGTATC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGTGACCTCATATCATCTTTGTCCTGTGTGGTCTCCTGTGTATC  245

seq1  TAGATTTCTTCTCATCAAATGGAAAGACTTTAGTCAAGCTGGATTATATG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCTTCTCATCAAATGGAAAGACTTTAGTCAAGCTGGATTATATG  295

seq1  GCCCACCTAAATGACCTCATTTAACTCAGTCCTCCAAAAATGATAACATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCTAAATGACCTCATTTAACTCAGTCCTCCAAAAATGATAACATT  345

seq1  CTACAATATTGGGGCTTCAATATATGGTGTGTGTGTGTGTGTGTGTGTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATATTGGGGCTTCAATATATGGTGTGTGTGTGTGTGTGTGTGTGT  395

seq1  GTGTGTGTGTGTGTGTGTGTGTGTAAATACAGTTTAGCCTATAATAGTTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTAAATACAGTTTAGCCTATAATAGTTA  445

seq1  AAAGAGTTTTTTTCAAAAACATGGTGTTAACAGCCAAAACATTAGTAGGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTTTTTTCAAAAACATGGTGTTAACAGCCAAAACATTAGTAGGG  495

seq1  TTTCAGAGATTTTTAAAAACAAAATGATTAGAAGTATGATTGAGCTTACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGATTTTTAAAAACAAAATGATTAGAAGTATGATTGAGCTTACA  545

seq1  CATTGTCCTATGTCTTGAGGGACAAATGGCCCCATTCAATTAAACCTCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCCTATGTCTTGAGGGACAAATGGCCCCATTCAATTAAACCTCAT  595

seq1  CTTGGGATCTAGATACTGACAGTCTCTAGATAGCAGCCTAAGAATGAGGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATCTAGATACTGACAGTCTCTAGATAGCAGCCTAAGAATGAGGG  645

seq1  CCAGCATCCACCAAAGGAACAAAACGTGAGCCTCTTGGGCCATTTAAATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCCACCAAAGGAACAAAACGTGAGCCTCTTGGGCCATTTAAATG  695

seq1  TCAAATATACTTAATCTAACTCAATGTATTCAGTCTTTTTTGTTGTTGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATACTTAATCTAACTCAATGTATTCAGTCTTTTTTGTTGTTGTT  745

seq1  TTGTTTTTCGAAACAGGGTTTTACTGTGTAGTCCTAGCTGTCCTGGAACT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCGAAACAGGGTTTTACTGTGTAGTCCTAGCTGTCCTGGAACT  795

seq1  TACTCTGTAGATCAGGCTGGCCTTGAACTCAGAAATTCACTGCCTCTACC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTAGATCAGGCTGGCCTTGAACTCAGAAATTCACTGCCTCTACC  845

seq1  TCCTAAGTTGCGGGGCTAAAGACATATGCCACCACTATGGGACTCAATGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGTTGCGGGGCTAAAGACATATGCCACCACTATGGGACTCAATGT  895

seq1  TATAAAATTGTCAGTGAGATAGCCCATATCCTCTTGTGGTTACATGTCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATTGTCAGTGAGATAGCCCATATCCTCTTGTGGTTACATGTCTT  945

seq1  CAGGCTCTGGCAACTACTCTTAGAGAATATCTCAGTACAGACTCATAGTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTGGCAACTACTCTTAGAGAATATCTCAGTACAGACTCATAGTA  995

seq1  TGGGAGGCAATGGCTGCCATATTCGACTGTGCAGATCTGAGGACTCATCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAATGGCTGCCATATTCGACTGTGCAGATCTGAGGACTCATCA  1045

seq1  GGTCCAAAATGAAGCAGAGGTATTCAGAAAATGAACAAAGGCTGAACTTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAAATGAAGCAGAGGTATTCAGAAAATGAACAAAGGCTGAACTTA  1095

seq1  GAGAGATCTTCCTAGGTTCTCAGAAGTGACCAGTGCCTTCTGAGATGTTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATCTTCCTAGGTTCTCAGAAGTGACCAGTGCCTTCTGAGATGTTC  1145

seq1  ACAGAATTC  1154
      |||||||||
seq2  ACAGAATTC  1154

seq1: chr16_29838975_29840002
seq2: B6Ng01-061D19.g_70_1097

seq1  GAATTCCTGATCTTTCTGCCCCTACTTCCTAAGTCCTGGCTGTCCAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTTTCTGCCCCTACTTCCTAAGTCCTGGCTGTCCAGGCA  50

seq1  AGAGTCACTACATATGGCTTTCATCTTTTGTTCGTTTTTGTTTGTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACTACATATGGCTTTCATCTTTTGTTCGTTTTTGTTTGTTTGTT  100

seq1  TGTTTGAGACAGAGTTTCTCTGTATAACCAGCTCTGGCTGTCCTGGACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGACAGAGTTTCTCTGTATAACCAGCTCTGGCTGTCCTGGACTC  150

seq1  ACTTTGTAAACCAGGCTGGACTCGAACTCACAGAGATCCTCCTCTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAAACCAGGCTGGACTCGAACTCACAGAGATCCTCCTCTCTCTG  200

seq1  CCAACCAAGTGCTAGTATCAAAGACGCGCCCCACCACGCCCAGCTGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAAGTGCTAGTATCAAAGACGCGCCCCACCACGCCCAGCTGGCCT  250

seq1  GAATCTCTTAAATTTCATCAGTGCACCCGAGGAATGGTGAAGAGATCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTTAAATTTCATCAGTGCACCCGAGGAATGGTGAAGAGATCCAT  300

seq1  GCCCCCTCTATTGACGTTCGCATTCACGTTTTCTTTAAAAAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTCTATTGACGTTCGCATTCACGTTTTCTTTAAAAAAAAAAAAAA  350

seq1  AAAAAAAAAAATTCCTCAGACTGAGCAGTCTGAGCAAGTAAGGCTCTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAATTCCTCAGACTGAGCAGTCTGAGCAAGTAAGGCTCTACT  400

seq1  AGCTTATCTAAGCGCCCCGCCCCCACTTGCCAGTTGCGGTAGTGCGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATCTAAGCGCCCCGCCCCCACTTGCCAGTTGCGGTAGTGCGGTCT  450

seq1  GCGAACAGCTAAGACACTTCCCAAGGTTTCTGTGTCCCCGCATGTTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAACAGCTAAGACACTTCCCAAGGTTTCTGTGTCCCCGCATGTTGCCA  500

seq1  CCCTGTGCTGCCAGCAACGCTTGCAGCTTTCTGGTTTTGTATTTCATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCTGCCAGCAACGCTTGCAGCTTTCTGGTTTTGTATTTCATCTC  550

seq1  AGCCTTAGCAGGATGTGTGAGCAGAGAGAGCATCTGGCAGAATGGCACCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTAGCAGGATGTGTGAGCAGAGAGAGCATCTGGCAGAATGGCACCG  600

seq1  CGAAATGGGAACCAGACGCTCGGTCGAGCGCCACCGAGAGCTGTTTATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATGGGAACCAGACGCTCGGTCGAGCGCCACCGAGAGCTGTTTATCC  650

seq1  GTGGAATTAACCTTTTGTTCTGCGTTTGCTCTGTGGTAGGCTTGCACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATTAACCTTTTGTTCTGCGTTTGCTCTGTGGTAGGCTTGCACTGT  700

seq1  GCTTTTAAATTCGCACCCTGCCCCGTGTCTCCAAGAGGCAGCCTGGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAATTCGCACCCTGCCCCGTGTCTCCAAGAGGCAGCCTGGTTCT  750

seq1  GCTGAGTCAGCGCTTCTCGGGCCTGGCAGAGGCGACTCGGAGCAACTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTCAGCGCTTCTCGGGCCTGGCAGAGGCGACTCGGAGCAACTGGT  800

seq1  AGCAAGAAAAGCTTGCAGCAGC-CCCCTCTGGCAGTCACCTTTGGCTCCC  849
      |||||||||||||||||||||| || |||||||||||||||||||||| |
seq2  AGCAAGAAAAGCTTGCAGCAGCTCCTCTCTGGCAGTCACCTTTGGCTCTC  850

seq1  TGTAGATTTACGACGGCAGCAGATGGGCCCAGGTGGACTCAAGTGAGAGT  899
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  TGTAGATTTACGACGGCAGCAGATGGGCTCAGGTGGACCCAAGTGAGAGT  900

seq1  CTCAGACAGGCCCAG-TTCCTCTGACTACTGTAATTGTGTCTA-GACCAG  947
      ||||||||||| ||| ||| |||||||||||||| |||||||| || |||
seq2  CTCAGACAGGCTCAGTTTCTTCTGACTACTGTAA-TGTGTCTAGGATCAG  949

seq1  AGGGAAGGCGCGCACACCTCCTGAATGCACTTTGAAACAACTCAAAAGTG  997
      |||||||||| ||||| ||||||||||||||||||||| ||||| |||||
seq2  AGGGAAGGCGTGCACATCTCCTGAATGCACTTTGAAAC-ACTCAGAAGTG  998

seq1  TGAAAGGAATTTACTACCACAGGAAGGTCTG  1028
      ||||||||||||||||||||||||| |||||
seq2  TGAAAGGAATTTACTACCACAGGAA-GTCTG  1028