BAC Information

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BAC

Clone NameB6Ng01-061M18
Chromosome16 (Build37)
Map Location 62,695,777 - 62,852,882
singlet/doubletdoublet
Overlap geneLOC100043806, Nsun3, Arl13b, Stx19
Upstream genenone
Downstream genePros1, Epha3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061M18.bB6Ng01-061M18.g
ACCDH882378DH882379
length1,1171,120
definitionDH882378|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M18, 5' end.DH882379|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,695,777 - 62,696,902)(62,851,732 - 62,852,882)
sequence
gaattcattagttatgtgaatatatttctaggcagagatttaaaataatc
tgttgcttttaactttcttatttttctctattccttcaacaattttctat
gcagaatatgatagtttcctagcaaaggtcttggtagatggtggctgtca
ccttcctcattctagacagcaaacttctgttagtgcccattacttctact
ggctgccacaaccccctgtttggttcattaagcttcctgctgattgtatg
tctcatttggccatttgtgctgacacccagcctcctctttcctgcatttg
tgtcctcttttcgtggagtagggatcaaggtcttacatagtgttagatcc
catagaaaagaatgtactacaaacccctaaattggttcatctctagatag
ttttcccaagtctgatgtaatttcaggtttatgagaaacactgttcaaaa
gtaaaatgtgatgcagtctacttttatgtgggtccatgccacatacaatc
aacaagggatttttcagcattttctctagcagaatcataagccaatttta
aaggctgctgactgtgagaaactgacacaggaagggagtcagcaaaagga
tttaatacacaaaggacaacgggagtattgagcacagagaaacagcaata
taaggtggtttataaatttgggaaaattaggctgtcatcattaagcactc
atcagttagattttaatcatgcacctgtttaacagagaacgtctattcta
atagacatttcacagaaaagtgtttggttcttgtataagcactttaagca
gtcacaatatatgtctatgtcactggtggggtgcttctgggagaataatt
atatttgatccattggatgggcattccagtataacaggaaaatggatgtg
gccagatgtttcttacattcttctgtgtttattatattctctctgtgcta
ctgggtagagccaatttttacatagaataatatagaagttgatctagaaa
acagaaagtgtttgtcacctacttttgaagtagcatacttactttgcaat
aagaactaaagtatttgtgaagtattgaagaatttttccatatttaacca
ggattctttggcatttc
gaattcaattcccagcaaccacaggttggctcacaactgtctgtaatgag
atctgatgccctcttctggtatgtgtctgaagacagctacagtgtactca
tgtaaataaaaataaataattttaaaaaaagaggagaaaataatattcaa
tcacatacatatacaggagaatttcacaaattcatgagatccaatgaggt
ggccagatgactgagacatatggcaacttaagttgaggaaaaggactttg
aggcttacagccaaggagttgaatgcggggagaagaaaagtcaggaagag
acaatgagtagaactgcatggtcaaaaggggttgcttgccttattgtctc
tctggcaacaacaattgttctgggtttgttctttctagtatggtaggaat
catactaactgggctggtgagatggctcagcaggtaagaacactgactgc
tcttccaaaggtcatgagttcaaatcccagcaaccatatggtggctcaca
accatccctaacgtgatctgactcccttttctggagtgtctgaagtcagc
tacagcatacttacatataataaataaataaatcaaaagaaaaggaattg
tactaactaaaaagaaatgctataagtataaatttctgttgtagcttgga
ttttttaaaaattactttaaaaacatttacttattttaatgcatgtgagc
tttacctgtgggtatgtgaaggcggatgtaccaccacaaagaagccagtt
gaggtcccctggaacaggagttccagatgtgttttgagccacagtgtgag
tactgggaaccaaactcaggtcctctggaagaacaactactcaaacccca
aacctctttcagctcctgaagctccaatcttagctgcttctgaaggtcct
gtgttaagggcttgtcaccagcctgtcgtaaaacaccaggacttgggatc
caatgaaaggtcactgaaggtgtgtgtgcctcccctcacacaccaatctg
tgtgtgctgttgtcctgtccttctcctagagcaagtaccaatactgtagc
tagcaccagttagcctcttcttcagtatattacccaatgtattctccatc
cagccaaggctcttatagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62695777_62696902
seq2: B6Ng01-061M18.b_44_1160

seq1  GAATTCATTAGTTATGTGAATATATTTCTAGGCAGAGATTTAAAATAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGTTATGTGAATATATTTCTAGGCAGAGATTTAAAATAATC  50

seq1  TGTTGCTTTTAACTTTCTTATTTTTCTCTATTCCTTCAACAATTTTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTTTAACTTTCTTATTTTTCTCTATTCCTTCAACAATTTTCTAT  100

seq1  GCAGAATATGATAGTTTCCTAGCAAAGGTCTTGGTAGATGGTGGCTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATATGATAGTTTCCTAGCAAAGGTCTTGGTAGATGGTGGCTGTCA  150

seq1  CCTTCCTCATTCTAGACAGCAAACTTCTGTTAGTGCCCATTACTTCTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCATTCTAGACAGCAAACTTCTGTTAGTGCCCATTACTTCTACT  200

seq1  GGCTGCCACAACCCCCTGTTTGGTTCATTAAGCTTCCTGCTGATTGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCACAACCCCCTGTTTGGTTCATTAAGCTTCCTGCTGATTGTATG  250

seq1  TCTCATTTGGCCATTTGTGCTGACACCCAGCCTCCTCTTTCCTGCATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTGGCCATTTGTGCTGACACCCAGCCTCCTCTTTCCTGCATTTG  300

seq1  TGTCCTCTTTTCGTGGAGTAGGGATCAAGGTCTTACATAGTGTTAGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTTTTCGTGGAGTAGGGATCAAGGTCTTACATAGTGTTAGATCC  350

seq1  CATAGAAAAGAATGTACTACAAACCCCTAAATTGGTTCATCTCTAGATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAAAGAATGTACTACAAACCCCTAAATTGGTTCATCTCTAGATAG  400

seq1  TTTTCCCAAGTCTGATGTAATTTCAGGTTTATGAGAAACACTGTTCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAAGTCTGATGTAATTTCAGGTTTATGAGAAACACTGTTCAAAA  450

seq1  GTAAAATGTGATGCAGTCTACTTTTATGTGGGTCCATGCCACATACAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGTGATGCAGTCTACTTTTATGTGGGTCCATGCCACATACAATC  500

seq1  AACAAGGGATTTTTCAGCATTTTCTCTAGCAGAATCATAAGCCAATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGGATTTTTCAGCATTTTCTCTAGCAGAATCATAAGCCAATTTTA  550

seq1  AAGGCTGCTGACTGTGAGAAACTGACACAGGAAGGGAGTCAGCAAAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGCTGACTGTGAGAAACTGACACAGGAAGGGAGTCAGCAAAAGGA  600

seq1  TTTAATACACAAAGGACAACGGGAGTATTGAGCACAGAGAAACAGCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATACACAAAGGACAACGGGAGTATTGAGCACAGAGAAACAGCAATA  650

seq1  TAAGGTGGTTTATAAATTTGGGAAAATTAGGCTGTCATCATTAAGCACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGGTTTATAAATTTGGGAAAATTAGGCTGTCATCATTAAGCACTC  700

seq1  ATCAGTTAGATTTTAATCATGCACCTGTTTAACAGAGAACGTCTATTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTAGATTTTAATCATGCACCTGTTTAACAGAGAACGTCTATTCTA  750

seq1  ATAGACATTTCACAGAAAAGTGTTTGGTTCTTGTATAAGCACTTTAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACATTTCACAGAAAAGTGTTTGGTTCTTGTATAAGCACTTTAAGCA  800

seq1  GTCACAATATATGTCTATGTCACTGGTGGGGTGCTTCTGGGAGAATAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAATATATGTCTATGTCACTGGTGGGGTGCTTCTGGGAGAATAATT  850

seq1  ATATTTGATCCAATTGGATGGGCATTCCAGTATAACAGGAAAATGGATGT  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGATCC-ATTGGATGGGCATTCCAGTATAACAGGAAAATGGATGT  899

seq1  GGCCAGATGTTTCTTACATTCTTCTGTGTTTATTATATTCTCTCCTGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGCCAGATGTTTCTTACATTCTTCTGTGTTTATTATATTCTCT-CTGTGC  948

seq1  TACTGGGTAGAGCCAATTTTTACAATAGAATAATATAGAAGTTGATCTAG  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TACTGGGTAGAGCCAATTTTTAC-ATAGAATAATATAGAAGTTGATCTAG  997

seq1  AAAAACAGAAAGTTGTTTGTCACCTACTTTTGAAGTAGCATATCTTACTT  1050
       ||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  -AAAACAGAAAG-TGTTTGTCACCTACTTTTGAAGTAGCATA-CTTACTT  1044

seq1  TGCAATAAGACTTAAAGTATTTGTGAAAGTA-TGAAGAATTTTTTCATAA  1099
      ||||||||||  ||||||||||||| ||||| |||||||||||| |||| 
seq2  TGCAATAAGAACTAAAGTATTTGTG-AAGTATTGAAGAATTTTTCCATA-  1092

seq1  TTTTTAACCATGATTTCTTTGCATTTC  1126
        |||||||| ||||  || |||||||
seq2  --TTTAACCAGGATTCTTTGGCATTTC  1117

seq1: chr16_62851732_62852882
seq2: B6Ng01-061M18.g_69_1188 (reverse)

seq1  TTCTATAATGTAGCCCTTGGCTTGTGACTGCAGAATACATTGTGGTAATA  50
      ||||||||   || |||||||   ||  || ||||||||||| |||||  
seq2  TTCTATAA--GAG-CCTTGGC---TGGATGGAGAATACATTG-GGTAA--  41

seq1  TTTATACTGGAAGAAAGAGGCTATACTGGTTGCTTAGCTTACAGTTATTG  100
        |||||| |||| ||||||||| ||||| ||| |||| ||||| |||||
seq2  --TATACT-GAAG-AAGAGGCTA-ACTGG-TGC-TAGC-TACAG-TATTG  82

seq1  GTTACTTGGCTACTAAGGAGAGAGACAGGACAAACAGGCACACACAGATT  150
      | ||||| ||| || ||||||  |||||||| |||| |||||||||||||
seq2  G-TACTT-GCT-CT-AGGAGAAGGACAGGAC-AACA-GCACACACAGATT  126

seq1  GGTGTGTGGGGGGAGGCAACAACACACCCTCAGTGACCTTTCATTGGGTC  200
      |||||||| |||||||||   ||||||| |||||||||||||||||| ||
seq2  GGTGTGTGAGGGGAGGCA--CACACACCTTCAGTGACCTTTCATTGGATC  174

seq1  CCAAGTCCTGGTGTTTTTACGACAGGCTGGTGACAAAGCCCTTAACACAG  250
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  CCAAGTCCTGGTG-TTTTACGACAGGCTGGTGAC-AAGCCCTTAACACAG  222

seq1  GAACCTTTCAGAAGCAGCTAAGATTGGAGCTTCAGGAGCTGGAAAGAGGT  300
      ||  | |||||||||||||||||||||||||||||||||| |||||||||
seq2  GA--CCTTCAGAAGCAGCTAAGATTGGAGCTTCAGGAGCT-GAAAGAGGT  269

seq1  TTGGGGTTTGAGTAGTTGTTCTTCCAGAGGACCTGAGTTTGGTTCCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTTTGAGTAGTTGTTCTTCCAGAGGACCTGAGTTTGGTTCCCAGT  319

seq1  ACTCACACTGTGGCTCAAAACACATCTGGAACTCCTGTTCCAGGGGACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACTGTGGCTCAAAACACATCTGGAACTCCTGTTCCAGGGGACCT  369

seq1  CAACTGGCTTCTTTGTGGTGGTACATCCGCCTTCACATACCCACAGGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGCTTCTTTGTGGTGGTACATCCGCCTTCACATACCCACAGGTAA  419

seq1  AGCTCACATGCATTAAAATAAGTAAATGTTTTTAAAGTAATTTTTAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACATGCATTAAAATAAGTAAATGTTTTTAAAGTAATTTTTAAAAA  469

seq1  ATCCAAGCTACAACAGAAATTTATACTTATAGCATTTCTTTTTAGTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGCTACAACAGAAATTTATACTTATAGCATTTCTTTTTAGTTAGT  519

seq1  ACAATTCCTTTTCTTTTGATTTATTTATTTATTATATGTAAGTATGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCCTTTTCTTTTGATTTATTTATTTATTATATGTAAGTATGCTGT  569

seq1  AGCTGACTTCAGACACTCCAGAAAAGGGAGTCAGATCACGTTAGGGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTTCAGACACTCCAGAAAAGGGAGTCAGATCACGTTAGGGATGG  619

seq1  TTGTGAGCCACCATATGGTTGCTGGGATTTGAACTCATGACCTTTGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCCACCATATGGTTGCTGGGATTTGAACTCATGACCTTTGGAAG  669

seq1  AGCAGTCAGTGTTCTTACCTGCTGAGCCATCTCACCAGCCCAGTTAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAGTGTTCTTACCTGCTGAGCCATCTCACCAGCCCAGTTAGTAT  719

seq1  GATTCCTACCATACTAGAAAGAACAAACCCAGAACAATTGTTGTTGCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTACCATACTAGAAAGAACAAACCCAGAACAATTGTTGTTGCCAG  769

seq1  AGAGACAATAAGGCAAGCAACCCCTTTTGACCATGCAGTTCTACTCATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAATAAGGCAAGCAACCCCTTTTGACCATGCAGTTCTACTCATTG  819

seq1  TCTCTTCCTGACTTTTCTTCTCCCCGCATTCAACTCCTTGGCTGTAAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTGACTTTTCTTCTCCCCGCATTCAACTCCTTGGCTGTAAGCC  869

seq1  TCAAAGTCCTTTTCCTCAACTTAAGTTGCCATATGTCTCAGTCATCTGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCCTTTTCCTCAACTTAAGTTGCCATATGTCTCAGTCATCTGGC  919

seq1  CACCTCATTGGATCTCATGAATTTGTGAAATTCTCCTGTATATGTATGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCATTGGATCTCATGAATTTGTGAAATTCTCCTGTATATGTATGTG  969

seq1  ATTGAATATTATTTTCTCCTCTTTTTTTAAAATTATTTATTTTTATTTAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATATTATTTTCTCCTCTTTTTTTAAAATTATTTATTTTTATTTAC  1019

seq1  ATGAGTACACTGTAGCTGTCTTCAGACACATACCAGAAGAGGGCATCAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTACACTGTAGCTGTCTTCAGACACATACCAGAAGAGGGCATCAGA  1069

seq1  TCTCATTACAGACAGTTGTGAGCCAACCTGTGGTTGCTGGGAATTGAATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTACAGACAGTTGTGAGCCAACCTGTGGTTGCTGGGAATTGAATT  1119

seq1  C  1151
      |
seq2  C  1120